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Summary Geometry Related PDB entries

V7Q

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.47Å	1.49Å
C1	C2	sing	1.51Å	1.51Å
C2	C3	doub	1.36Å	1.39Å	Aromatic
C2	C7	sing	1.42Å	1.38Å	Aromatic
C3	C4	sing	1.39Å	1.39Å	Aromatic
C4	C5	doub	1.36Å	1.36Å	Aromatic
C5	C6	sing	1.42Å	1.41Å	Aromatic
C6	N2	doub	1.32Å	1.35Å	Aromatic
C6	C7	sing	1.46Å	1.44Å	Aromatic
N2	S1	sing	1.56Å	1.62Å	Aromatic
S1	N3	sing	1.55Å	1.62Å	Aromatic
N3	C7	doub	1.32Å	1.34Å	Aromatic
N1	H1	sing	1.01Å	1.00Å
N1	H2	sing	1.01Å	1.00Å
C1	H3	sing	1.09Å	1.10Å
C1	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.08Å	1.08Å
C4	H6	sing	1.08Å	1.08Å
C5	H7	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N1	C1	C2	114.9°	109.5°
C1	N1	H1	109.5°	111.0°
C1	N1	H2	109.5°	110.9°
N1	C1	H3	108.1°	109.5°
N1	C1	H4	108.1°	109.5°
C1	C2	C3	121.4°	120.1°
C1	C2	C7	121.5°	120.1°
C2	C1	H3	108.1°	109.5°
C2	C1	H4	108.1°	109.5°
C3	C2	C7	117.1°	119.8°
C2	C3	C4	122.2°	121.7°
C2	C3	H5	118.9°	119.2°
C2	C7	C6	120.7°	118.6°
C2	C7	N3	125.9°	130.9°
C3	C4	C5	122.1°	121.5°
C4	C3	H5	118.9°	119.2°
C3	C4	H6	119.0°	119.2°
C4	C5	C6	117.8°	119.9°
C5	C4	H6	119.0°	119.2°
C4	C5	H7	121.1°	120.0°
C5	C6	N2	126.7°	131.0°
C5	C6	C7	120.1°	118.5°
C6	C5	H7	121.1°	120.1°
N2	C6	C7	113.2°	110.5°
C6	N2	S1	105.0°	109.4°
C6	C7	N3	113.4°	110.5°
N2	S1	N3	101.5°	100.2°
S1	N3	C7	105.2°	109.4°
H1	N1	H2	109.4°	111.0°
H3	C1	H4	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N1	C1	C2	H3	120.8°	120.0°
N1	C1	C2	H4	120.8°	120.0°
N1	C1	C2	C3	163.3°	100.0°
N1	C1	C2	C7	17.9°	79.7°
C1	N1	H1	H2	120.0°	123.9°
N1	C1	H3	H4	117.5°	120.0°
C1	C2	C3	C7	178.9°	179.8°
C1	C2	C3	C4	177.9°	180.0°
C1	C2	C7	C6	178.2°	179.7°
C1	C2	C7	N3	3.0°	0.6°
C2	C1	N1	H1	180.0°	56.0°
C2	C1	N1	H2	60.0°	180.0°
C2	C1	H3	H4	117.5°	120.0°
C1	C2	C3	H5	2.1°	0.0°
C2	C3	C4	H5	180.0°	180.0°
C2	C3	C4	C5	1.2°	0.0°
C3	C2	C7	C6	0.7°	0.5°
C3	C2	C7	N3	178.1°	179.6°
C3	C2	C1	H3	42.5°	139.9°
C3	C2	C1	H4	76.0°	19.9°
C2	C3	C4	H6	178.8°	179.9°
C7	C2	C3	C4	1.0°	0.2°
C2	C7	C6	C5	0.6°	0.5°
C2	C7	C6	N2	179.1°	179.7°
C2	C7	C6	N3	178.9°	179.3°
C2	C7	N3	S1	170.8°	179.6°
C7	C2	C1	H3	138.7°	40.3°
C7	C2	C1	H4	102.9°	160.3°
C7	C2	C3	H5	179.0°	179.8°
C3	C4	C5	H6	180.0°	179.9°
C3	C4	C5	C6	1.0°	0.0°
C3	C4	C5	H7	179.0°	180.0°
C4	C5	C6	H7	180.0°	179.9°
C4	C5	C6	N2	179.0°	180.0°
C4	C5	C6	C7	0.7°	0.3°
C5	C4	C3	H5	178.8°	180.0°
C5	C6	N2	C7	178.4°	179.7°
C5	C6	N2	S1	170.1°	179.9°
C5	C6	C7	N3	178.3°	179.8°
C6	C5	C4	H6	179.0°	179.9°
C6	N2	S1	N3	12.0°	0.0°
N2	C6	C7	N3	0.2°	0.5°
N2	C6	C5	H7	1.0°	0.1°
C7	C6	N2	S1	8.4°	0.2°
C6	C7	N3	S1	8.1°	0.5°
C7	C6	C5	H7	179.3°	179.8°
N2	S1	N3	C7	11.9°	0.3°
H1	N1	C1	H3	59.2°	176.1°
H1	N1	C1	H4	59.2°	63.9°
H2	N1	C1	H3	60.8°	60.0°
H2	N1	C1	H4	179.2°	60.0°
H5	C3	C4	H6	1.2°	0.0°
H6	C4	C5	H7	1.0°	0.0°

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PDB entries from 2026-03-18

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