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V7E

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Pdoub1.48Å1.51Å
PO2Psing1.61Å1.51Å
PO5'sing1.61Å1.61Å
PO3'1sing1.61Å1.61Å
O5'C5'sing1.43Å1.42Å
C5'C4'sing1.53Å1.52Å
C4'O4'sing1.43Å1.44Å
C4'C3'sing1.54Å1.53Å
O4'C1'sing1.43Å1.43Å
C3'O3'sing1.43Å1.41Å
C3'C2'sing1.54Å1.52Å
O3'P1sing1.61Å1.61Å
C2'O2'sing1.43Å1.42Å
C2'C1'sing1.54Å1.52Å
C1'N9sing1.46Å1.48Å
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C8N7doub1.30Å1.36ÅAromatic
N7C5sing1.35Å1.34ÅAromatic
C5C6doub1.40Å1.48ÅAromatic
C5C4sing1.41Å1.47ÅAromatic
C6N6sing1.38Å1.35Å
C6N1sing1.33Å1.35ÅAromatic
N1C2doub1.32Å1.35ÅAromatic
C2N3sing1.32Å1.34ÅAromatic
N3C4doub1.33Å1.35ÅAromatic
P1O1P1doub1.48Å1.51Å
P1O2P1sing1.61Å1.51Å
P1O5'1sing1.61Å1.61Å
O5'1C5'1sing1.43Å1.42Å
C5'1C4'1sing1.53Å1.52Å
C4'1O4'1sing1.43Å1.44Å
C4'1C3'1sing1.54Å1.52Å
O4'1C1'1sing1.43Å1.44Å
C3'1O3'1sing1.43Å1.41Å
C3'1C2'1sing1.54Å1.52Å
C2'1O2'1sing1.43Å1.42Å
C2'1C1'1sing1.54Å1.53Å
C1'1N91sing1.47Å1.48Å
N91C81sing1.36Å1.35ÅAromatic
N91C41sing1.37Å1.34ÅAromatic
C81N71doub1.30Å1.36ÅAromatic
N71C51sing1.35Å1.35ÅAromatic
C51C61doub1.40Å1.48ÅAromatic
C51C41sing1.41Å1.47ÅAromatic
C61N61sing1.38Å1.35Å
C61N11sing1.33Å1.35ÅAromatic
N11C21doub1.32Å1.35ÅAromatic
C21N31sing1.32Å1.34ÅAromatic
N31C41doub1.33Å1.35ÅAromatic
O2PH1sing0.97Å0.95Å
C5'H5'Asing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'H1'sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
N6H3sing0.97Å1.00Å
N6HN6sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
O2P1H4sing0.97Å0.95Å
C5'1HC5'sing1.09Å1.10Å
C5'1HC5Asing1.09Å1.10Å
C4'1HC4'sing1.09Å1.10Å
C3'1HC3'sing1.09Å1.10Å
C2'1HC2'sing1.09Å1.10Å
O2'1HO2Asing0.97Å0.95Å
C1'1HC1'sing1.09Å1.10Å
C81HC8sing1.08Å1.08Å
N61H5sing0.97Å1.00Å
N61H1N6sing0.97Å1.00Å
C21HC2sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P111.0°109.5°
O1PPO5'108.8°109.5°
O1PPO3'1109.6°109.5°
O2PPO5'109.3°109.4°
O2PPO3'1109.2°109.4°
PO2PH1109.5°114.0°
O5'PO3'1108.9°109.5°
PO5'C5'119.4°123.0°
PO3'1C3'1118.6°122.9°
O5'C5'C4'110.3°109.4°
O5'C5'H5'A109.3°109.5°
O5'C5'H5'109.3°109.5°
C5'C4'O4'112.4°110.0°
C5'C4'C3'113.2°109.8°
C4'C5'H5'A109.2°109.4°
C4'C5'H5'109.3°109.5°
C5'C4'H4'108.3°110.0°
O4'C4'C3'105.1°107.4°
C4'O4'C1'110.1°109.8°
O4'C4'H4'109.4°109.7°
C4'C3'O3'114.6°110.4°
C4'C3'C2'102.6°104.8°
C3'C4'H4'108.3°109.9°
C4'C3'H3'108.5°110.3°
O4'C1'C2'107.1°108.4°
O4'C1'N9111.3°109.7°
O4'C1'H1'110.7°109.7°
O3'C3'C2'112.1°110.5°
C3'O3'P1118.5°122.9°
O3'C3'H3'110.0°110.5°
C3'C2'O2'111.9°110.3°
C3'C2'C1'103.1°105.0°
C2'C3'H3'108.6°110.2°
C3'C2'H2'109.2°110.4°
O3'P1O1P1109.3°109.5°
O3'P1O2P1109.5°109.5°
O3'P1O5'1108.7°109.4°
O2'C2'C1'112.7°110.4°
O2'C2'H2'110.6°110.3°
C2'O2'HO2'109.5°114.0°
C2'C1'N9108.3°109.7°
C1'C2'H2'109.1°110.4°
C2'C1'H1'109.4°109.7°
C1'N9C8126.0°126.2°
C1'N9C4125.1°126.3°
N9C1'H1'110.0°109.6°
C8N9C4108.8°107.5°
N9C8N7110.6°109.9°
N9C8H8124.7°125.1°
N9C4C5106.2°106.0°
N9C4N3134.9°134.9°
C8N7C5107.8°109.5°
N7C8H8124.7°125.0°
N7C5C6136.4°134.7°
N7C5C4106.6°107.1°
C6C5C4117.0°118.2°
C5C6N6121.2°120.8°
C5C6N1117.7°118.5°
C5C4N3118.9°119.0°
N6C6N1121.1°120.7°
C6N6H3109.5°120.0°
C6N6HN6109.5°120.0°
C6N1C2122.2°121.1°
N1C2N3123.0°122.5°
N1C2H2118.5°118.7°
C2N3C4121.2°120.7°
N3C2H2118.5°118.8°
O1P1P1O2P1111.0°109.5°
O1P1P1O5'1109.3°109.5°
O2P1P1O5'1108.9°109.5°
P1O2P1H4109.5°114.0°
P1O5'1C5'1119.3°123.1°
O5'1C5'1C4'1110.3°109.3°
O5'1C5'1HC5'109.3°109.5°
O5'1C5'1HC5A109.2°109.5°
C5'1C4'1O4'1112.1°110.1°
C5'1C4'1C3'1113.5°109.8°
C4'1C5'1HC5'109.3°109.5°
C4'1C5'1HC5A109.3°109.5°
C5'1C4'1HC4'108.4°110.0°
O4'1C4'1C3'1105.0°107.4°
C4'1O4'1C1'1110.1°109.7°
O4'1C4'1HC4'109.5°109.7°
C4'1C3'1O3'1114.4°110.4°
C4'1C3'1C2'1102.4°104.8°
C3'1C4'1HC4'108.3°109.8°
C4'1C3'1HC3'108.7°110.3°
O4'1C1'1C2'1106.8°108.5°
O4'1C1'1N91111.1°109.7°
O4'1C1'1HC1'110.8°109.7°
O3'1C3'1C2'1111.9°110.5°
O3'1C3'1HC3'110.3°110.6°
C3'1C2'1O2'1111.8°110.3°
C3'1C2'1C1'1103.2°104.9°
C2'1C3'1HC3'108.8°110.1°
C3'1C2'1HC2'109.3°110.3°
O2'1C2'1C1'1112.5°110.4°
O2'1C2'1HC2'110.6°110.3°
C2'1O2'1HO2A109.5°114.0°
C2'1C1'1N91108.5°109.7°
C1'1C2'1HC2'109.2°110.5°
C2'1C1'1HC1'109.5°109.7°
C1'1N91C81125.9°126.3°
C1'1N91C41125.2°126.3°
N91C1'1HC1'110.1°109.6°
C81N91C41108.8°107.5°
N91C81N71110.7°110.0°
N91C81HC8124.6°125.0°
N91C41C51106.2°106.0°
N91C41N31134.9°134.9°
C81N71C51107.7°109.5°
N71C81HC8124.7°125.0°
N71C51C61136.4°134.7°
N71C51C41106.6°107.1°
C61C51C41117.0°118.2°
C51C61N61121.2°120.8°
C51C61N11117.8°118.5°
C51C41N31118.9°119.0°
N61C61N11121.0°120.8°
C61N61H5109.5°120.1°
C61N61H1N6109.5°120.0°
C61N11C21122.1°121.1°
N11C21N31123.0°122.5°
N11C21HC2118.5°118.8°
C21N31C41121.2°120.7°
N31C21HC2118.5°118.8°
H5'AC5'H5'109.4°109.5°
H3N6HN6109.5°120.0°
HC5'C5'1HC5A109.5°109.5°
H5N61H1N6109.5°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO5'120.1°120.0°
O1PPO2PO3'1120.9°120.0°
O1PPO5'O3'1119.4°120.0°
O1PPO5'C5'172.3°71.9°
O1PPO3'1C3'156.5°37.3°
O1PPO2PH10.0°60.0°
O2PPO5'O3'1119.2°120.0°
O2PPO5'C5'50.9°48.1°
O2PPO3'1C3'1178.2°157.3°
PO5'C5'C4'162.7°164.4°
O5'PO3'1C3'162.5°82.7°
O5'PO2PH1120.1°60.0°
PO5'C5'H5'A42.6°44.5°
PO5'C5'H5'77.2°75.6°
O3'1PO5'C5'68.3°168.0°
PO3'1C3'1C4'1160.2°122.6°
PO3'1C3'1C2'184.0°122.0°
O3'1PO2PH1120.9°180.0°
PO3'1C3'1HC3'37.3°0.2°
O5'C5'C4'H5'A120.1°119.9°
O5'C5'C4'H5'120.2°120.0°
O5'C5'C4'O4'51.4°174.6°
O5'C5'C4'C3'67.5°67.3°
O5'C5'H5'AH5'119.6°120.1°
O5'C5'C4'H4'172.4°53.7°
C5'C4'O4'C3'123.5°119.5°
C5'C4'O4'H4'120.4°121.1°
C5'C4'C3'H4'120.1°121.1°
C5'C4'O4'C1'145.0°141.9°
C5'C4'C3'O3'81.8°103.5°
C5'C4'C3'C2'156.5°137.5°
C4'C5'H5'AH5'119.6°120.0°
C5'C4'C3'H3'41.7°18.9°
O4'C4'C3'H4'116.9°119.3°
O4'C4'C3'O3'155.3°136.9°
O4'C4'C3'C2'33.5°17.9°
C4'O4'C1'C2'0.5°17.6°
C4'O4'C1'N9118.7°137.5°
O4'C4'C5'H5'A171.5°54.7°
O4'C4'C5'H5'68.8°65.4°
O4'C4'C3'H3'81.3°100.7°
C4'O4'C1'H1'118.7°102.1°
C3'C4'O4'C1'21.5°22.4°
C4'C3'O3'C2'116.4°115.5°
C4'C3'O3'H3'122.7°122.3°
C4'C3'C2'H3'114.8°118.7°
C4'C3'O3'P1161.1°120.4°
C4'C3'C2'O2'153.8°126.2°
C4'C3'C2'C1'32.4°7.3°
C3'C4'C5'H5'A52.7°172.7°
C3'C4'C5'H5'172.4°52.7°
C4'C3'C2'H2'83.5°111.6°
O4'C1'C2'C3'20.6°5.6°
O4'C1'C2'O2'141.4°113.3°
O4'C1'C2'N9120.1°119.8°
O4'C1'C2'H1'120.0°119.7°
O4'C1'N9H1'123.0°120.5°
O4'C1'N9C825.9°23.6°
O4'C1'N9C4155.2°156.7°
C1'O4'C4'H4'94.6°97.0°
O4'C1'C2'H2'95.4°124.5°
O3'C3'C2'H3'121.8°122.4°
O3'C3'C2'O2'82.7°114.9°
O3'C3'C2'C1'155.9°126.2°
C3'O3'P1O1P1177.7°152.4°
C3'O3'P1O2P155.9°32.4°
C3'O3'P1O5'163.0°87.6°
O3'C3'C4'H4'38.4°17.6°
O3'C3'C2'H2'40.0°7.3°
C2'C3'O3'P182.5°124.1°
C3'C2'O2'C1'115.7°115.6°
C3'C2'O2'H2'121.9°122.2°
C3'C2'C1'H2'115.9°118.9°
C3'C2'C1'N999.6°125.4°
C2'C3'C4'H4'83.4°101.4°
C3'C2'O2'HO2'180.0°180.0°
C3'C2'C1'H1'140.6°114.1°
O3'P1O1P1O2P1120.9°120.0°
O3'P1O1P1O5'1118.9°120.0°
O3'P1O2P1O5'1118.8°119.9°
O3'P1O5'1C5'167.3°174.6°
P1O3'C3'H3'38.4°1.9°
O3'P1O2P1H4120.8°180.0°
O2'C2'C1'H2'123.2°122.2°
O2'C2'C1'N921.3°6.6°
O2'C2'C3'H3'39.0°7.5°
O2'C2'C1'H1'98.5°127.0°
C2'C1'N9H1'119.5°120.5°
C2'C1'N9C891.6°95.4°
C2'C1'N9C487.3°84.3°
C1'C2'C3'H3'82.4°111.4°
C1'C2'O2'HO2'64.3°64.4°
C1'N9C8C4179.0°179.8°
C1'N9C8N7179.6°180.0°
C1'N9C4C5179.5°179.9°
C1'N9C4N30.8°0.7°
N9C1'C2'H2'144.5°115.6°
C1'N9C8H80.4°0.0°
N9C8N7H8180.0°180.0°
N9C8N7C50.4°0.0°
C8N9C4C50.5°0.3°
C8N9C4N3179.8°179.5°
C8N9C1'H1'148.9°144.1°
C4N9C8N70.5°0.2°
N9C4C5N70.2°0.3°
N9C4C5C6179.7°179.8°
N9C4C5N3179.8°179.4°
N9C4N3C2179.8°179.6°
C4N9C1'H1'32.2°36.2°
C4N9C8H8179.4°179.8°
C8N7C5C6180.0°180.0°
C8N7C5C40.1°0.2°
N7C5C6C4179.9°179.8°
N7C5C6N60.0°0.0°
N7C5C6N1180.0°180.0°
N7C5C4N3180.0°179.7°
C5N7C8H8179.6°180.0°
C5C6N6N1180.0°180.0°
C5C6N1C20.1°0.0°
C6C5C4N30.1°0.5°
C5C6N6H3180.0°0.0°
C5C6N6HN659.9°180.0°
C4C5C6N6179.9°179.8°
C4C5C6N10.1°0.3°
C5C4N3C20.0°0.4°
N6C6N1C2179.9°180.0°
C6N6H3HN6120.0°180.0°
C6N1C2N30.2°0.0°
N1C6N6H30.0°180.0°
N1C6N6HN6120.0°0.0°
C6N1C2H2179.8°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.2°0.2°
C4N3C2H2179.8°179.7°
O1P1P1O2P1O5'1120.4°120.0°
O1P1P1O5'1C5'152.0°54.6°
O1P1P1O2P1H40.0°60.0°
O2P1P1O5'1C5'1173.4°65.4°
P1O5'1C5'1C4'1162.6°173.4°
O5'1P1O2P1H4120.4°60.0°
P1O5'1C5'1HC5'42.5°53.4°
P1O5'1C5'1HC5A77.2°66.7°
O5'1C5'1C4'1HC5'120.1°119.9°
O5'1C5'1C4'1HC5A120.1°120.0°
O5'1C5'1C4'1O4'150.8°171.6°
O5'1C5'1C4'1C3'167.9°70.3°
O5'1C5'1HC5'HC5A119.6°120.1°
O5'1C5'1C4'1HC4'171.8°50.6°
C5'1C4'1O4'1C3'1123.6°119.5°
C5'1C4'1O4'1HC4'120.3°121.2°
C5'1C4'1C3'1HC4'120.4°121.1°
C5'1C4'1O4'1C1'1145.9°142.3°
C5'1C4'1C3'1O3'181.7°102.6°
C5'1C4'1C3'1C2'1157.1°138.4°
C4'1C5'1HC5'HC5A119.6°120.1°
C5'1C4'1C3'1HC3'42.1°20.0°
O4'1C4'1C3'1HC4'116.9°119.2°
O4'1C4'1C3'1O3'1155.6°137.7°
O4'1C4'1C3'1C2'134.3°18.7°
C4'1O4'1C1'1C2'10.9°17.4°
C4'1O4'1C1'1N91119.1°137.2°
O4'1C4'1C5'1HC5'170.9°51.7°
O4'1C4'1C5'1HC5A69.3°68.4°
O4'1C4'1C3'1HC3'80.6°99.7°
C4'1O4'1C1'1HC1'118.3°102.5°
C3'1C4'1O4'1C1'122.3°22.7°
C4'1C3'1O3'1C2'1115.8°115.5°
C4'1C3'1O3'1HC3'122.9°122.4°
C4'1C3'1C2'1HC3'115.0°118.6°
C4'1C3'1C2'1O2'1154.1°127.1°
C4'1C3'1C2'1C1'133.0°8.2°
C3'1C4'1C5'1HC5'52.2°169.7°
C3'1C4'1C5'1HC5A172.0°49.6°
C4'1C3'1C2'1HC2'83.1°110.8°
O4'1C1'1C2'1C3'120.7°4.9°
O4'1C1'1C2'1O2'1141.4°114.0°
O4'1C1'1C2'1N91119.8°119.8°
O4'1C1'1C2'1HC1'120.0°119.8°
O4'1C1'1N91HC1'123.1°120.4°
O4'1C1'1N91C8124.0°23.5°
O4'1C1'1N91C41156.9°156.7°
C1'1O4'1C4'1HC4'93.8°96.5°
O4'1C1'1C2'1HC2'95.4°123.8°
O3'1C3'1C2'1HC3'122.1°122.5°
O3'1C3'1C2'1O2'183.0°114.0°
O3'1C3'1C2'1C1'1155.9°127.2°
O3'1C3'1C4'1HC4'38.7°18.5°
O3'1C3'1C2'1HC2'39.9°8.2°
C3'1C2'1O2'1C1'1115.5°115.5°
C3'1C2'1O2'1HC2'122.0°122.2°
C3'1C2'1C1'1HC2'116.1°118.9°
C3'1C2'1C1'1N9199.1°124.7°
C2'1C3'1C4'1HC4'82.6°100.5°
C3'1C2'1O2'1HO2A48.2°179.9°
C3'1C2'1C1'1HC1'140.7°114.9°
O2'1C2'1C1'1HC2'123.2°122.3°
O2'1C2'1C1'1N9121.5°5.8°
O2'1C2'1C3'1HC3'39.2°8.5°
O2'1C2'1C1'1HC1'98.6°126.2°
C2'1C1'1N91HC1'119.8°120.5°
C2'1C1'1N91C8193.1°95.6°
C2'1C1'1N91C4185.9°84.2°
C1'1C2'1C3'1HC3'81.9°110.3°
C1'1C2'1O2'1HO2A163.8°64.6°
C1'1N91C81C41179.2°179.8°
C1'1N91C81N71179.6°180.0°
C1'1N91C41C51179.6°179.9°
C1'1N91C41N310.6°0.7°
N91C1'1C2'1HC2'144.8°116.4°
C1'1N91C81HC80.4°0.0°
N91C81N71HC8180.0°180.0°
N91C81N71C510.3°0.0°
C81N91C41C510.4°0.3°
C81N91C41N31179.8°179.5°
C81N91C1'1HC1'147.1°144.0°
C41N91C81N710.4°0.2°
N91C41C51N710.2°0.3°
N91C41C51C61179.8°179.8°
N91C41C51N31179.8°179.3°
N91C41N31C21179.7°179.6°
C41N91C1'1HC1'33.9°36.3°
C41N91C81HC8179.6°179.7°
C81N71C51C61179.9°180.0°
C81N71C51C410.0°0.2°
N71C51C61C41180.0°179.8°
N71C51C61N610.1°0.1°
N71C51C61N11180.0°180.0°
N71C51C41N31180.0°179.7°
C51N71C81HC8179.7°180.0°
C51C61N61N11179.9°179.9°
C51C61N11C210.0°0.1°
C61C51C41N310.0°0.5°
C51C61N61H5179.9°0.0°
C51C61N61H1N659.9°179.9°
C41C51C61N61180.0°179.7°
C41C51C61N110.0°0.2°
C51C41N31C210.1°0.5°
N61C61N11C21180.0°180.0°
C61N61H5H1N6120.0°180.0°
C61N11C21N310.0°0.1°
N11C61N61H50.0°180.0°
N11C61N61H1N6120.0°0.0°
C61N11C21HC2180.0°180.0°
N11C21N31HC2180.0°180.0°
N11C21N31C410.1°0.2°
C41N31C21HC2179.9°179.7°
H5'AC5'C4'H4'67.4°66.2°
H5'C5'C4'H4'52.3°173.7°
H4'C4'C3'H3'161.8°140.0°
H3'C3'C2'H2'161.7°129.6°
H2'C2'O2'HO2'58.1°57.8°
H2'C2'C1'H1'24.7°4.8°
HC5'C5'1C4'1HC4'68.1°69.3°
HC5AC5'1C4'1HC4'51.6°170.6°
HC4'C4'1C3'1HC3'162.5°141.1°
HC3'C3'1C2'1HC2'162.0°130.7°
HC2'C2'1O2'1HO2A73.8°57.8°
HC2'C2'1C1'1HC1'24.6°4.0°

222415

PDB entries from 2024-07-10

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