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Summary Geometry Related PDB entries

V6Z

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C7	C6	doub	1.38Å	1.35Å	Aromatic
C7	C8	sing	1.38Å	1.38Å	Aromatic
C6	C5	sing	1.38Å	1.39Å	Aromatic
C8	C9	doub	1.38Å	1.36Å	Aromatic
C5	C4	doub	1.40Å	1.36Å	Aromatic
C9	C4	sing	1.40Å	1.34Å	Aromatic
C9	CL	sing	1.74Å	1.71Å
C4	C3	sing	1.48Å	1.48Å
O2	C3	doub	1.21Å	1.23Å
C3	N	sing	1.35Å	1.37Å
O1	C1	doub	1.21Å	1.19Å
C2	N	sing	1.47Å	1.47Å
C2	C1	sing	1.51Å	1.56Å
C1	O	sing	1.34Å	1.38Å
O	C	sing	1.45Å	1.41Å
C7	H1	sing	1.08Å	1.08Å
C8	H2	sing	1.08Å	1.08Å
C5	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C2	H5	sing	1.09Å	1.10Å
C2	H6	sing	1.09Å	1.10Å
N	H7	sing	0.97Å	1.00Å
C	H8	sing	1.09Å	1.10Å
C	H9	sing	1.09Å	1.10Å
C	H10	sing	1.09Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C7	C8	118.8°	120.4°
C7	C6	C5	120.0°	120.1°
C6	C7	H1	120.6°	119.8°
C7	C6	H4	120.0°	120.0°
C7	C8	C9	120.2°	120.1°
C8	C7	H1	120.6°	119.8°
C7	C8	H2	119.9°	120.0°
C6	C5	C4	120.7°	119.9°
C6	C5	H3	119.7°	120.0°
C5	C6	H4	119.9°	119.9°
C8	C9	C4	121.7°	119.8°
C8	C9	CL	117.2°	120.1°
C9	C8	H2	119.9°	119.9°
C5	C4	C9	118.6°	119.7°
C5	C4	C3	117.7°	120.2°
C4	C5	H3	119.6°	120.1°
C4	C9	CL	121.0°	120.1°
C9	C4	C3	123.7°	120.1°
C4	C3	O2	123.0°	120.0°
C4	C3	N	113.4°	120.0°
O2	C3	N	123.5°	120.0°
C3	N	C2	123.1°	120.0°
C3	N	H7	118.5°	120.1°
O1	C1	C2	123.2°	120.0°
O1	C1	O	111.1°	120.0°
N	C2	C1	111.8°	109.5°
N	C2	H5	108.9°	109.5°
N	C2	H6	108.9°	109.5°
C2	N	H7	118.4°	120.0°
C2	C1	O	125.6°	120.0°
C1	C2	H5	108.9°	109.5°
C1	C2	H6	108.9°	109.5°
C1	O	C	121.3°	117.0°
O	C	H8	109.5°	109.5°
O	C	H9	109.5°	109.5°
O	C	H10	109.5°	109.5°
H5	C2	H6	109.5°	109.5°
H8	C	H9	109.5°	109.5°
H8	C	H10	109.4°	109.5°
H9	C	H10	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C7	C8	H1	180.0°	179.8°
C7	C6	C5	H4	180.0°	179.9°
C6	C7	C8	C9	0.3°	0.0°
C7	C6	C5	C4	0.9°	0.0°
C6	C7	C8	H2	179.7°	179.9°
C7	C6	C5	H3	179.1°	179.9°
C8	C7	C6	C5	1.3°	0.0°
C7	C8	C9	H2	180.0°	179.9°
C7	C8	C9	C4	1.2°	0.0°
C7	C8	C9	CL	175.0°	180.0°
C8	C7	C6	H4	178.7°	179.9°
C6	C5	C4	H3	180.0°	179.9°
C6	C5	C4	C9	0.6°	0.0°
C6	C5	C4	C3	178.6°	180.0°
C5	C6	C7	H1	178.7°	179.8°
C8	C9	C4	C5	1.7°	0.0°
C8	C9	C4	CL	176.1°	180.0°
C8	C9	C4	C3	179.5°	180.0°
C9	C8	C7	H1	179.7°	179.8°
C5	C4	C9	C3	177.8°	180.0°
C5	C4	C9	CL	174.4°	180.0°
C5	C4	C3	O2	106.1°	180.0°
C5	C4	C3	N	74.1°	0.0°
C4	C5	C6	H4	179.1°	179.9°
C9	C4	C3	O2	76.1°	0.0°
C9	C4	C3	N	103.7°	180.0°
C4	C9	C8	H2	178.8°	179.9°
C9	C4	C5	H3	179.4°	179.9°
CL	C9	C4	C3	3.4°	0.0°
CL	C9	C8	H2	5.0°	0.1°
C4	C3	O2	N	179.9°	180.0°
C4	C3	N	C2	0.1°	180.0°
C3	C4	C5	H3	1.5°	0.1°
C4	C3	N	H7	179.9°	0.0°
O2	C3	N	C2	179.8°	0.0°
O2	C3	N	H7	0.2°	180.0°
C3	N	C2	H7	180.0°	180.0°
C3	N	C2	C1	117.2°	180.0°
C3	N	C2	H5	3.2°	60.0°
C3	N	C2	H6	122.5°	60.0°
O1	C1	C2	N	25.6°	0.0°
O1	C1	C2	O	178.7°	180.0°
O1	C1	O	C	177.9°	0.0°
O1	C1	C2	H5	94.8°	120.0°
O1	C1	C2	H6	145.9°	120.0°
N	C2	C1	H5	120.4°	120.0°
N	C2	C1	H6	120.4°	120.0°
N	C2	C1	O	153.1°	180.0°
N	C2	H5	H6	118.9°	120.0°
C2	C1	O	C	0.9°	180.0°
C1	C2	H5	H6	118.9°	120.0°
C1	C2	N	H7	62.9°	0.0°
O	C1	C2	H5	86.5°	60.0°
O	C1	C2	H6	32.7°	60.0°
C1	O	C	H8	180.0°	60.0°
C1	O	C	H9	60.0°	60.0°
C1	O	C	H10	60.0°	180.0°
O	C	H8	H9	120.0°	120.0°
O	C	H8	H10	120.0°	120.0°
O	C	H9	H10	120.0°	120.0°
H1	C7	C8	H2	0.3°	0.3°
H1	C7	C6	H4	1.3°	0.3°
H3	C5	C6	H4	0.9°	0.1°
H5	C2	N	H7	176.8°	120.0°
H6	C2	N	H7	57.5°	120.0°
H8	C	H9	H10	120.0°	120.0°

222415

PDB entries from 2024-07-10

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