V5Y
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1 | C5 | sing | 1.35Å | 1.35Å | |
| C5 | O | doub | 1.21Å | 1.21Å | |
| C5 | C4 | sing | 1.51Å | 1.52Å | |
| C4 | C | sing | 1.53Å | 1.49Å | |
| C4 | C3 | sing | 1.53Å | 1.51Å | |
| C | C1 | sing | 1.53Å | 1.51Å | |
| C3 | C2 | sing | 1.53Å | 1.51Å | |
| C1 | N | sing | 1.47Å | 1.51Å | |
| C2 | N | sing | 1.47Å | 1.49Å | |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| N1 | H2 | sing | 0.97Å | 1.00Å | |
| C1 | H3 | sing | 1.09Å | 1.10Å | |
| C1 | H4 | sing | 1.09Å | 1.10Å | |
| C4 | H5 | sing | 1.09Å | 1.10Å | |
| C3 | H6 | sing | 1.09Å | 1.10Å | |
| C3 | H7 | sing | 1.09Å | 1.10Å | |
| C2 | H8 | sing | 1.09Å | 1.10Å | |
| C2 | H9 | sing | 1.09Å | 1.10Å | |
| C | H10 | sing | 1.09Å | 1.10Å | |
| C | H11 | sing | 1.09Å | 1.10Å | |
| N | H12 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N1 | C5 | O | 121.0° | 120.0° |
| N1 | C5 | C4 | 119.5° | 120.1° |
| C5 | N1 | H1 | 120.0° | 120.0° |
| C5 | N1 | H2 | 120.0° | 120.0° |
| O | C5 | C4 | 119.6° | 120.0° |
| C5 | C4 | C | 108.8° | 109.5° |
| C5 | C4 | C3 | 109.0° | 109.5° |
| C5 | C4 | H5 | 109.7° | 109.5° |
| C | C4 | C3 | 109.4° | 109.2° |
| C4 | C | C1 | 108.1° | 109.3° |
| C | C4 | H5 | 110.1° | 109.5° |
| C4 | C | H10 | 109.8° | 109.5° |
| C4 | C | H11 | 109.8° | 109.5° |
| C4 | C3 | C2 | 111.0° | 109.3° |
| C3 | C4 | H5 | 109.8° | 109.6° |
| C4 | C3 | H6 | 109.1° | 109.5° |
| C4 | C3 | H7 | 109.0° | 109.5° |
| C | C1 | N | 106.6° | 109.5° |
| C | C1 | H3 | 110.2° | 109.5° |
| C | C1 | H4 | 110.2° | 109.4° |
| C1 | C | H10 | 109.8° | 109.5° |
| C1 | C | H11 | 109.8° | 109.5° |
| C3 | C2 | N | 106.3° | 109.5° |
| C2 | C3 | H6 | 109.1° | 109.5° |
| C2 | C3 | H7 | 109.1° | 109.5° |
| C3 | C2 | H8 | 110.3° | 109.4° |
| C3 | C2 | H9 | 110.3° | 109.5° |
| C1 | N | C2 | 107.6° | 111.2° |
| N | C1 | H3 | 110.2° | 109.5° |
| N | C1 | H4 | 110.2° | 109.5° |
| C1 | N | H12 | 109.9° | 111.0° |
| N | C2 | H8 | 110.2° | 109.5° |
| N | C2 | H9 | 110.2° | 109.5° |
| C2 | N | H12 | 109.9° | 111.0° |
| H1 | N1 | H2 | 120.0° | 120.0° |
| H3 | C1 | H4 | 109.5° | 109.5° |
| H6 | C3 | H7 | 109.5° | 109.6° |
| H8 | C2 | H9 | 109.5° | 109.4° |
| H10 | C | H11 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N1 | C5 | O | C4 | 178.0° | 179.9° |
| N1 | C5 | C4 | C | 148.2° | 180.0° |
| N1 | C5 | C4 | C3 | 92.5° | 60.3° |
| C5 | N1 | H1 | H2 | 180.0° | 179.6° |
| N1 | C5 | C4 | H5 | 27.7° | 59.9° |
| O | C5 | C4 | C | 33.8° | 0.1° |
| O | C5 | C4 | C3 | 85.5° | 119.7° |
| O | C5 | N1 | H1 | 0.0° | 0.1° |
| O | C5 | N1 | H2 | 180.0° | 179.7° |
| O | C5 | C4 | H5 | 154.3° | 120.2° |
| C5 | C4 | C | C3 | 119.0° | 119.9° |
| C5 | C4 | C | H5 | 120.3° | 120.1° |
| C5 | C4 | C3 | H5 | 120.2° | 120.1° |
| C5 | C4 | C | C1 | 178.6° | 177.6° |
| C5 | C4 | C3 | C2 | 177.1° | 177.6° |
| C4 | C5 | N1 | H1 | 178.0° | 180.0° |
| C4 | C5 | N1 | H2 | 2.0° | 0.4° |
| C5 | C4 | C3 | H6 | 56.9° | 57.6° |
| C5 | C4 | C3 | H7 | 62.6° | 62.5° |
| C5 | C4 | C | H10 | 61.6° | 57.7° |
| C5 | C4 | C | H11 | 58.8° | 62.5° |
| C | C4 | C3 | H5 | 121.0° | 120.0° |
| C4 | C | C1 | H10 | 119.8° | 119.9° |
| C4 | C | C1 | H11 | 119.8° | 119.9° |
| C | C4 | C3 | C2 | 58.3° | 57.7° |
| C4 | C | C1 | N | 64.7° | 59.2° |
| C4 | C | C1 | H3 | 54.8° | 60.9° |
| C4 | C | C1 | H4 | 175.7° | 179.2° |
| C | C4 | C3 | H6 | 61.9° | 62.3° |
| C | C4 | C3 | H7 | 178.5° | 177.6° |
| C4 | C | H10 | H11 | 120.6° | 120.1° |
| C3 | C4 | C | C1 | 59.6° | 57.7° |
| C4 | C3 | C2 | H6 | 120.2° | 119.9° |
| C4 | C3 | C2 | H7 | 120.2° | 119.9° |
| C4 | C3 | C2 | N | 60.3° | 59.2° |
| C4 | C3 | H6 | H7 | 119.3° | 120.1° |
| C4 | C3 | C2 | H8 | 179.8° | 179.2° |
| C4 | C3 | C2 | H9 | 59.2° | 60.8° |
| C3 | C4 | C | H10 | 179.4° | 62.3° |
| C3 | C4 | C | H11 | 60.2° | 177.6° |
| C | C1 | N | H3 | 119.6° | 120.0° |
| C | C1 | N | H4 | 119.6° | 120.0° |
| C | C1 | N | C2 | 68.6° | 61.8° |
| C | C1 | H3 | H4 | 121.3° | 119.9° |
| C1 | C | C4 | H5 | 61.1° | 62.3° |
| C1 | C | H10 | H11 | 120.7° | 120.1° |
| C | C1 | N | H12 | 171.7° | 174.2° |
| C3 | C2 | N | C1 | 65.2° | 61.8° |
| C3 | C2 | N | H8 | 119.5° | 120.0° |
| C3 | C2 | N | H9 | 119.5° | 120.1° |
| C2 | C3 | C4 | H5 | 62.7° | 62.3° |
| C2 | C3 | H6 | H7 | 119.3° | 120.1° |
| C3 | C2 | H8 | H9 | 121.5° | 120.0° |
| C3 | C2 | N | H12 | 175.1° | 174.1° |
| C1 | N | C2 | H12 | 119.7° | 124.1° |
| N | C1 | H3 | H4 | 121.3° | 120.0° |
| C1 | N | C2 | H8 | 175.3° | 178.2° |
| C1 | N | C2 | H9 | 54.3° | 58.3° |
| N | C1 | C | H10 | 175.5° | 60.8° |
| N | C1 | C | H11 | 55.0° | 179.1° |
| C2 | N | C1 | H3 | 51.0° | 58.3° |
| C2 | N | C1 | H4 | 171.9° | 178.3° |
| N | C2 | C3 | H6 | 59.9° | 60.7° |
| N | C2 | C3 | H7 | 179.5° | 179.1° |
| N | C2 | H8 | H9 | 121.4° | 120.0° |
| H3 | C1 | C | H10 | 65.0° | 179.2° |
| H3 | C1 | C | H11 | 174.6° | 59.1° |
| H3 | C1 | N | H12 | 68.8° | 65.8° |
| H4 | C1 | C | H10 | 55.9° | 59.3° |
| H4 | C1 | C | H11 | 64.5° | 60.8° |
| H4 | C1 | N | H12 | 52.1° | 54.2° |
| H5 | C4 | C3 | H6 | 177.1° | 177.8° |
| H5 | C4 | C3 | H7 | 57.5° | 57.6° |
| H5 | C4 | C | H10 | 58.7° | 177.7° |
| H5 | C4 | C | H11 | 179.1° | 57.6° |
| H6 | C3 | C2 | H8 | 59.6° | 59.3° |
| H6 | C3 | C2 | H9 | 179.4° | 179.2° |
| H7 | C3 | C2 | H8 | 60.0° | 60.9° |
| H7 | C3 | C2 | H9 | 61.0° | 59.0° |
| H8 | C2 | N | H12 | 55.6° | 54.1° |
| H9 | C2 | N | H12 | 65.4° | 65.8° |
