V5U
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | doub | 1.38Å | 1.40Å | Aromatic |
C1 | C5 | sing | 1.39Å | 1.40Å | Aromatic |
C2 | N1 | sing | 1.32Å | 1.34Å | Aromatic |
N1 | C3 | doub | 1.32Å | 1.35Å | Aromatic |
C3 | C4 | sing | 1.39Å | 1.41Å | Aromatic |
C5 | C4 | doub | 1.40Å | 1.42Å | Aromatic |
C4 | N4 | sing | 1.40Å | 1.42Å | |
N2 | C5 | sing | 1.39Å | 1.41Å | |
N2 | C6 | sing | 1.47Å | 1.46Å | |
C10 | N2 | sing | 1.47Å | 1.47Å | |
C6 | C7 | sing | 1.53Å | 1.54Å | |
C7 | C8 | sing | 1.53Å | 1.54Å | |
C8 | C9 | sing | 1.53Å | 1.54Å | |
N3 | C8 | sing | 1.47Å | 1.47Å | |
C9 | C10 | sing | 1.53Å | 1.54Å | |
O1 | C9 | sing | 1.43Å | 1.42Å | |
C11 | O1 | sing | 1.43Å | 1.42Å | |
N4 | C12 | sing | 1.35Å | 1.34Å | |
C13 | C12 | sing | 1.48Å | 1.52Å | |
C12 | O3 | doub | 1.22Å | 1.23Å | |
C13 | C14 | doub | 1.41Å | 1.43Å | Aromatic |
N6 | C13 | sing | 1.33Å | 1.36Å | Aromatic |
C14 | N5 | sing | 1.33Å | 1.35Å | Aromatic |
N8 | C14 | sing | 1.38Å | 1.39Å | |
N5 | C15 | doub | 1.32Å | 1.35Å | Aromatic |
C15 | C16 | sing | 1.40Å | 1.42Å | Aromatic |
C16 | N6 | doub | 1.33Å | 1.36Å | Aromatic |
C17 | C16 | sing | 1.48Å | 1.49Å | |
C17 | C18 | doub | 1.40Å | 1.43Å | Aromatic |
N7 | C17 | sing | 1.33Å | 1.36Å | Aromatic |
C18 | C19 | sing | 1.39Å | 1.42Å | Aromatic |
O2 | C18 | sing | 1.36Å | 1.38Å | |
C19 | C20 | doub | 1.39Å | 1.40Å | Aromatic |
C20 | C21 | sing | 1.38Å | 1.40Å | Aromatic |
C21 | N7 | doub | 1.32Å | 1.34Å | Aromatic |
C22 | O2 | sing | 1.43Å | 1.36Å | |
F1 | C22 | sing | 1.40Å | 1.35Å | |
F2 | C22 | sing | 1.40Å | 1.36Å | |
F3 | C22 | sing | 1.40Å | 1.35Å | |
C1 | H1 | sing | 1.08Å | 1.08Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C3 | H3 | sing | 1.08Å | 1.08Å | |
C11 | H111 | sing | 1.09Å | 1.10Å | |
C11 | H113 | sing | 1.09Å | 1.10Å | |
C11 | H112 | sing | 1.09Å | 1.10Å | |
C15 | H15 | sing | 1.08Å | 1.08Å | |
C19 | H19 | sing | 1.08Å | 1.08Å | |
C20 | H20 | sing | 1.08Å | 1.08Å | |
C21 | H21 | sing | 1.08Å | 1.08Å | |
C10 | H102 | sing | 1.09Å | 1.10Å | |
C10 | H101 | sing | 1.09Å | 1.10Å | |
C6 | H61 | sing | 1.09Å | 1.10Å | |
C6 | H62 | sing | 1.09Å | 1.10Å | |
C7 | H71 | sing | 1.09Å | 1.10Å | |
C7 | H72 | sing | 1.09Å | 1.10Å | |
C8 | H8 | sing | 1.09Å | 1.10Å | |
C9 | H9 | sing | 1.09Å | 1.10Å | |
N3 | H4 | sing | 1.01Å | 1.00Å | |
N3 | HN31 | sing | 1.01Å | 1.00Å | |
N4 | H5 | sing | 0.97Å | 1.00Å | |
N8 | HN81 | sing | 0.97Å | 1.00Å | |
N8 | HN82 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | C5 | 119.2° | 119.2° |
C1 | C2 | N1 | 123.2° | 121.0° |
C2 | C1 | H1 | 120.4° | 120.4° |
C1 | C2 | H2 | 118.4° | 119.5° |
C1 | C5 | C4 | 118.0° | 118.2° |
C1 | C5 | N2 | 118.7° | 120.9° |
C5 | C1 | H1 | 120.4° | 120.4° |
C2 | N1 | C3 | 118.0° | 122.0° |
N1 | C2 | H2 | 118.4° | 119.5° |
N1 | C3 | C4 | 123.3° | 120.7° |
N1 | C3 | H3 | 118.3° | 119.7° |
C3 | C4 | C5 | 118.2° | 119.0° |
C3 | C4 | N4 | 120.6° | 120.5° |
C4 | C3 | H3 | 118.3° | 119.6° |
C5 | C4 | N4 | 121.1° | 120.5° |
C4 | C5 | N2 | 123.2° | 120.9° |
C4 | N4 | C12 | 130.9° | 120.0° |
C4 | N4 | H5 | 114.5° | 120.0° |
C5 | N2 | C6 | 118.7° | 111.0° |
C5 | N2 | C10 | 115.1° | 111.0° |
C6 | N2 | C10 | 117.0° | 111.2° |
N2 | C6 | C7 | 111.0° | 109.5° |
N2 | C6 | H61 | 109.1° | 109.4° |
N2 | C6 | H62 | 109.1° | 109.5° |
N2 | C10 | C9 | 112.6° | 109.5° |
N2 | C10 | H102 | 108.7° | 109.5° |
N2 | C10 | H101 | 108.7° | 109.5° |
C6 | C7 | C8 | 111.2° | 109.3° |
C7 | C6 | H61 | 109.1° | 109.4° |
C7 | C6 | H62 | 109.1° | 109.5° |
C6 | C7 | H71 | 109.0° | 109.5° |
C6 | C7 | H72 | 109.0° | 109.5° |
C7 | C8 | C9 | 109.4° | 109.2° |
C7 | C8 | N3 | 111.7° | 109.5° |
C8 | C7 | H71 | 109.0° | 109.5° |
C8 | C7 | H72 | 109.0° | 109.6° |
C7 | C8 | H8 | 108.4° | 109.6° |
C9 | C8 | N3 | 109.4° | 109.5° |
C8 | C9 | C10 | 110.6° | 109.2° |
C8 | C9 | O1 | 105.8° | 109.5° |
C9 | C8 | H8 | 108.5° | 109.5° |
C8 | C9 | H9 | 109.1° | 109.5° |
N3 | C8 | H8 | 109.4° | 109.6° |
C8 | N3 | H4 | 109.5° | 110.9° |
C8 | N3 | HN31 | 109.5° | 111.0° |
C10 | C9 | O1 | 111.6° | 109.5° |
C9 | C10 | H102 | 108.7° | 109.4° |
C9 | C10 | H101 | 108.7° | 109.5° |
C10 | C9 | H9 | 109.0° | 109.5° |
C9 | O1 | C11 | 113.7° | 114.0° |
O1 | C9 | H9 | 110.7° | 109.6° |
O1 | C11 | H111 | 109.5° | 109.4° |
O1 | C11 | H113 | 109.4° | 109.5° |
O1 | C11 | H112 | 109.5° | 109.5° |
N4 | C12 | C13 | 111.9° | 120.0° |
N4 | C12 | O3 | 124.9° | 120.0° |
C12 | N4 | H5 | 114.6° | 120.0° |
C13 | C12 | O3 | 123.2° | 120.0° |
C12 | C13 | C14 | 124.2° | 120.1° |
C12 | C13 | N6 | 115.6° | 120.1° |
C14 | C13 | N6 | 120.1° | 119.8° |
C13 | C14 | N5 | 121.7° | 119.9° |
C13 | C14 | N8 | 124.8° | 120.0° |
C13 | N6 | C16 | 118.8° | 119.9° |
N5 | C14 | N8 | 113.5° | 120.0° |
C14 | N5 | C15 | 116.9° | 120.1° |
C14 | N8 | HN81 | 109.5° | 120.0° |
C14 | N8 | HN82 | 109.5° | 120.0° |
N5 | C15 | C16 | 122.9° | 120.1° |
N5 | C15 | H15 | 118.6° | 120.0° |
C15 | C16 | N6 | 119.6° | 120.2° |
C15 | C16 | C17 | 121.4° | 119.9° |
C16 | C15 | H15 | 118.5° | 119.9° |
N6 | C16 | C17 | 119.0° | 119.9° |
C16 | C17 | C18 | 125.5° | 119.8° |
C16 | C17 | N7 | 112.9° | 119.8° |
C18 | C17 | N7 | 121.6° | 120.5° |
C17 | C18 | C19 | 117.7° | 119.0° |
C17 | C18 | O2 | 120.3° | 120.5° |
C17 | N7 | C21 | 119.6° | 121.6° |
C19 | C18 | O2 | 122.0° | 120.5° |
C18 | C19 | C20 | 119.8° | 118.5° |
C18 | C19 | H19 | 120.1° | 120.8° |
C18 | O2 | C22 | 120.0° | 117.0° |
C19 | C20 | C21 | 118.4° | 119.4° |
C20 | C19 | H19 | 120.1° | 120.8° |
C19 | C20 | H20 | 120.8° | 120.3° |
C20 | C21 | N7 | 122.9° | 121.0° |
C21 | C20 | H20 | 120.8° | 120.2° |
C20 | C21 | H21 | 118.6° | 119.5° |
N7 | C21 | H21 | 118.5° | 119.5° |
O2 | C22 | F1 | 110.6° | 109.5° |
O2 | C22 | F2 | 111.6° | 109.5° |
O2 | C22 | F3 | 109.9° | 109.4° |
F1 | C22 | F2 | 109.6° | 109.5° |
F1 | C22 | F3 | 107.8° | 109.5° |
F2 | C22 | F3 | 107.2° | 109.5° |
H111 | C11 | H113 | 109.5° | 109.5° |
H111 | C11 | H112 | 109.5° | 109.5° |
H113 | C11 | H112 | 109.5° | 109.5° |
H102 | C10 | H101 | 109.5° | 109.5° |
H61 | C6 | H62 | 109.5° | 109.5° |
H71 | C7 | H72 | 109.5° | 109.5° |
H4 | N3 | HN31 | 109.5° | 111.0° |
HN81 | N8 | HN82 | 109.5° | 120.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | C5 | H1 | 180.0° | 179.8° |
C1 | C2 | N1 | H2 | 180.0° | 179.9° |
C1 | C2 | N1 | C3 | 0.0° | 0.0° |
C2 | C1 | C5 | C4 | 0.6° | 0.0° |
C2 | C1 | C5 | N2 | 179.7° | 180.0° |
C5 | C1 | C2 | N1 | 0.2° | 0.0° |
C1 | C5 | C4 | C3 | 0.9° | 0.0° |
C1 | C5 | C4 | N2 | 179.0° | 179.9° |
C1 | C5 | C4 | N4 | 179.4° | 180.0° |
C1 | C5 | N2 | C6 | 106.5° | 59.9° |
C1 | C5 | N2 | C10 | 39.4° | 64.3° |
C5 | C1 | C2 | H2 | 179.8° | 179.9° |
C2 | N1 | C3 | C4 | 0.3° | 0.0° |
N1 | C2 | C1 | H1 | 179.8° | 179.8° |
C2 | N1 | C3 | H3 | 179.7° | 180.0° |
N1 | C3 | C4 | H3 | 180.0° | 180.0° |
N1 | C3 | C4 | C5 | 0.8° | 0.0° |
N1 | C3 | C4 | N4 | 179.3° | 180.0° |
C3 | N1 | C2 | H2 | 180.0° | 179.9° |
C3 | C4 | C5 | N4 | 178.5° | 180.0° |
C3 | C4 | C5 | N2 | 179.9° | 180.0° |
C3 | C4 | N4 | C12 | 51.7° | 26.0° |
C3 | C4 | N4 | H5 | 128.3° | 154.0° |
C4 | C5 | N2 | C6 | 72.5° | 120.0° |
C4 | C5 | N2 | C10 | 141.6° | 115.7° |
C5 | C4 | N4 | C12 | 129.9° | 154.0° |
C4 | C5 | C1 | H1 | 179.3° | 179.8° |
C5 | C4 | C3 | H3 | 179.2° | 180.0° |
C5 | C4 | N4 | H5 | 50.2° | 26.0° |
N4 | C4 | C5 | N2 | 1.6° | 0.1° |
C4 | N4 | C12 | H5 | 180.0° | 180.0° |
C4 | N4 | C12 | C13 | 178.5° | 176.6° |
C4 | N4 | C12 | O3 | 1.3° | 3.4° |
N4 | C4 | C3 | H3 | 0.7° | 0.0° |
C5 | N2 | C6 | C10 | 145.2° | 124.1° |
C5 | N2 | C6 | C7 | 164.2° | 174.2° |
C5 | N2 | C10 | C9 | 163.6° | 174.1° |
N2 | C5 | C1 | H1 | 0.3° | 0.2° |
C5 | N2 | C10 | H102 | 75.9° | 54.1° |
C5 | N2 | C10 | H101 | 43.2° | 65.8° |
C5 | N2 | C6 | H61 | 44.0° | 65.9° |
C5 | N2 | C6 | H62 | 75.6° | 54.1° |
N2 | C6 | C7 | H61 | 120.2° | 119.9° |
N2 | C6 | C7 | H62 | 120.2° | 120.1° |
N2 | C6 | C7 | C8 | 53.7° | 59.1° |
C6 | N2 | C10 | C9 | 49.9° | 61.7° |
C6 | N2 | C10 | H102 | 70.6° | 178.3° |
C6 | N2 | C10 | H101 | 170.4° | 58.3° |
N2 | C6 | H61 | H62 | 119.3° | 120.0° |
N2 | C6 | C7 | H71 | 66.6° | 60.8° |
N2 | C6 | C7 | H72 | 173.9° | 179.2° |
C10 | N2 | C6 | C7 | 50.6° | 61.7° |
N2 | C10 | C9 | C8 | 51.3° | 59.1° |
N2 | C10 | C9 | H102 | 120.5° | 120.0° |
N2 | C10 | C9 | H101 | 120.4° | 120.0° |
N2 | C10 | C9 | O1 | 168.8° | 179.1° |
N2 | C10 | H102 | H101 | 118.5° | 120.0° |
C10 | N2 | C6 | H61 | 170.8° | 58.2° |
C10 | N2 | C6 | H62 | 69.7° | 178.3° |
N2 | C10 | C9 | H9 | 68.6° | 60.8° |
C6 | C7 | C8 | H71 | 120.3° | 119.9° |
C6 | C7 | C8 | H72 | 120.3° | 120.0° |
C6 | C7 | C8 | C9 | 57.4° | 57.7° |
C6 | C7 | C8 | N3 | 178.7° | 177.5° |
C7 | C6 | H61 | H62 | 119.3° | 120.0° |
C6 | C7 | H71 | H72 | 119.2° | 120.0° |
C6 | C7 | C8 | H8 | 60.7° | 62.2° |
C7 | C8 | C9 | N3 | 122.7° | 119.9° |
C7 | C8 | C9 | H8 | 118.1° | 120.0° |
C7 | C8 | N3 | H8 | 120.0° | 120.2° |
C7 | C8 | C9 | C10 | 55.5° | 57.7° |
C7 | C8 | C9 | O1 | 176.5° | 177.6° |
C8 | C7 | C6 | H61 | 173.9° | 60.8° |
C8 | C7 | C6 | H62 | 66.5° | 179.2° |
C8 | C7 | H71 | H72 | 119.1° | 120.1° |
C7 | C8 | C9 | H9 | 64.3° | 62.2° |
C7 | C8 | N3 | H4 | 180.0° | 60.0° |
C7 | C8 | N3 | HN31 | 60.0° | 176.1° |
C9 | C8 | N3 | H8 | 118.7° | 120.1° |
C8 | C9 | C10 | O1 | 117.5° | 119.9° |
C8 | C9 | C10 | H9 | 119.9° | 119.9° |
C8 | C9 | O1 | H9 | 118.1° | 120.2° |
C8 | C9 | O1 | C11 | 133.9° | 150.0° |
C8 | C9 | C10 | H102 | 69.2° | 179.2° |
C8 | C9 | C10 | H101 | 171.7° | 60.9° |
C9 | C8 | C7 | H71 | 62.9° | 62.3° |
C9 | C8 | C7 | H72 | 177.7° | 177.6° |
C9 | C8 | N3 | H4 | 58.7° | 179.7° |
C9 | C8 | N3 | HN31 | 61.3° | 56.4° |
N3 | C8 | C9 | C10 | 178.2° | 177.6° |
N3 | C8 | C9 | O1 | 60.8° | 62.5° |
N3 | C8 | C7 | H71 | 58.4° | 57.6° |
N3 | C8 | C7 | H72 | 61.0° | 62.5° |
N3 | C8 | C9 | H9 | 58.4° | 57.7° |
C8 | N3 | H4 | HN31 | 120.0° | 123.9° |
C10 | C9 | O1 | H9 | 121.6° | 120.1° |
C10 | C9 | O1 | C11 | 105.8° | 90.2° |
C9 | C10 | H102 | H101 | 118.6° | 120.0° |
C10 | C9 | C8 | H8 | 62.5° | 62.3° |
C9 | O1 | C11 | H111 | 180.0° | 60.0° |
C9 | O1 | C11 | H113 | 60.0° | 60.0° |
C9 | O1 | C11 | H112 | 60.0° | 180.0° |
O1 | C9 | C10 | H102 | 48.3° | 60.9° |
O1 | C9 | C10 | H101 | 70.8° | 59.1° |
O1 | C9 | C8 | H8 | 58.5° | 57.6° |
O1 | C11 | H111 | H113 | 120.0° | 120.0° |
O1 | C11 | H111 | H112 | 120.0° | 120.0° |
O1 | C11 | H113 | H112 | 120.0° | 120.0° |
C11 | O1 | C9 | H9 | 15.8° | 29.9° |
N4 | C12 | C13 | O3 | 179.8° | 180.0° |
N4 | C12 | C13 | C14 | 165.3° | 98.8° |
N4 | C12 | C13 | N6 | 13.9° | 81.4° |
C12 | C13 | C14 | N6 | 179.1° | 179.7° |
C12 | C13 | C14 | N5 | 179.5° | 180.0° |
C12 | C13 | C14 | N8 | 0.8° | 0.0° |
C12 | C13 | N6 | C16 | 179.1° | 180.0° |
C13 | C12 | N4 | H5 | 1.4° | 3.4° |
O3 | C12 | C13 | C14 | 14.6° | 81.2° |
O3 | C12 | C13 | N6 | 166.3° | 98.5° |
O3 | C12 | N4 | H5 | 178.7° | 176.6° |
C13 | C14 | N5 | N8 | 179.7° | 180.0° |
C13 | C14 | N5 | C15 | 0.3° | 0.0° |
C14 | C13 | N6 | C16 | 0.1° | 0.3° |
C13 | C14 | N8 | HN81 | 179.7° | 5.1° |
C13 | C14 | N8 | HN82 | 60.3° | 174.9° |
N6 | C13 | C14 | N5 | 0.4° | 0.3° |
N6 | C13 | C14 | N8 | 179.9° | 179.8° |
C13 | N6 | C16 | C15 | 0.7° | 0.0° |
C13 | N6 | C16 | C17 | 179.4° | 180.0° |
C14 | N5 | C15 | C16 | 0.4° | 0.2° |
C14 | N5 | C15 | H15 | 179.6° | 180.0° |
N5 | C14 | N8 | HN81 | 0.0° | 175.0° |
N5 | C14 | N8 | HN82 | 120.0° | 5.1° |
N8 | C14 | N5 | C15 | 180.0° | 180.0° |
C14 | N8 | HN81 | HN82 | 120.0° | 179.9° |
N5 | C15 | C16 | H15 | 180.0° | 179.8° |
N5 | C15 | C16 | N6 | 0.9° | 0.2° |
N5 | C15 | C16 | C17 | 179.6° | 179.7° |
C15 | C16 | N6 | C17 | 178.7° | 180.0° |
C15 | C16 | C17 | C18 | 173.7° | 155.0° |
C15 | C16 | C17 | N7 | 7.0° | 25.3° |
N6 | C16 | C17 | C18 | 7.6° | 25.0° |
N6 | C16 | C17 | N7 | 171.7° | 154.8° |
N6 | C16 | C15 | H15 | 179.1° | 180.0° |
C16 | C17 | C18 | N7 | 179.2° | 179.8° |
C16 | C17 | C18 | C19 | 179.7° | 180.0° |
C16 | C17 | C18 | O2 | 0.4° | 0.0° |
C16 | C17 | N7 | C21 | 179.9° | 179.8° |
C17 | C16 | C15 | H15 | 0.5° | 0.0° |
C17 | C18 | C19 | O2 | 179.9° | 180.0° |
C17 | C18 | C19 | C20 | 0.1° | 0.0° |
C18 | C17 | N7 | C21 | 0.6° | 0.5° |
C17 | C18 | O2 | C22 | 96.4° | 174.1° |
C17 | C18 | C19 | H19 | 179.9° | 180.0° |
N7 | C17 | C18 | C19 | 0.4° | 0.2° |
N7 | C17 | C18 | O2 | 179.7° | 179.8° |
C17 | N7 | C21 | C20 | 0.4° | 0.5° |
C17 | N7 | C21 | H21 | 179.6° | 179.7° |
C18 | C19 | C20 | H19 | 180.0° | 179.9° |
C18 | C19 | C20 | C21 | 0.1° | 0.0° |
C19 | C18 | O2 | C22 | 83.5° | 5.8° |
C18 | C19 | C20 | H20 | 179.9° | 180.0° |
O2 | C18 | C19 | C20 | 180.0° | 180.0° |
C18 | O2 | C22 | F1 | 48.5° | 63.4° |
C18 | O2 | C22 | F2 | 73.9° | 176.6° |
C18 | O2 | C22 | F3 | 167.4° | 56.6° |
O2 | C18 | C19 | H19 | 0.0° | 0.1° |
C19 | C20 | C21 | H20 | 180.0° | 180.0° |
C19 | C20 | C21 | N7 | 0.0° | 0.3° |
C19 | C20 | C21 | H21 | 179.9° | 180.0° |
C20 | C21 | N7 | H21 | 180.0° | 179.8° |
C21 | C20 | C19 | H19 | 179.9° | 179.9° |
N7 | C21 | C20 | H20 | 180.0° | 179.8° |
O2 | C22 | F1 | F2 | 123.5° | 120.0° |
O2 | C22 | F1 | F3 | 120.2° | 120.0° |
O2 | C22 | F2 | F3 | 120.4° | 120.0° |
F1 | C22 | F2 | F3 | 116.7° | 120.0° |
H1 | C1 | C2 | H2 | 0.2° | 0.3° |
H111 | C11 | H113 | H112 | 120.0° | 120.1° |
H19 | C19 | C20 | H20 | 0.1° | 0.0° |
H20 | C20 | C21 | H21 | 0.1° | 0.0° |
H102 | C10 | C9 | H9 | 170.9° | 59.2° |
H101 | C10 | C9 | H9 | 51.8° | 179.2° |
H61 | C6 | C7 | H71 | 53.7° | 179.2° |
H61 | C6 | C7 | H72 | 65.8° | 59.2° |
H62 | C6 | C7 | H71 | 173.2° | 59.2° |
H62 | C6 | C7 | H72 | 53.7° | 60.8° |
H71 | C7 | C8 | H8 | 179.0° | 177.8° |
H72 | C7 | C8 | H8 | 59.6° | 57.7° |
H8 | C8 | C9 | H9 | 177.6° | 177.8° |
H8 | C8 | N3 | H4 | 60.0° | 60.2° |
H8 | C8 | N3 | HN31 | 180.0° | 63.7° |