V5N
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| ND1 | CE1 | sing | 1.35Å | 1.33Å | Aromatic |
| ND1 | CG | sing | 1.37Å | 1.33Å | Aromatic |
| CE1 | NE2 | doub | 1.30Å | 1.33Å | Aromatic |
| CB | CG | sing | 1.51Å | 1.53Å | |
| CB | O2 | sing | 1.43Å | 1.43Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| CG | CD2 | doub | 1.35Å | 1.33Å | Aromatic |
| C | CA | sing | 1.51Å | 1.53Å | |
| C | O | doub | 1.21Å | 1.25Å | |
| CA | N | sing | 1.47Å | 1.47Å | |
| NE2 | CD2 | sing | 1.34Å | 1.33Å | Aromatic |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| ND1 | HD1 | sing | 0.97Å | 1.00Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| O2 | H11 | sing | 0.97Å | 0.95Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CE1 | ND1 | CG | 106.4° | 107.2° |
| ND1 | CE1 | NE2 | 108.5° | 108.7° |
| CE1 | ND1 | HD1 | 126.8° | 126.4° |
| ND1 | CE1 | HE1 | 125.7° | 125.6° |
| ND1 | CG | CB | 124.7° | 126.6° |
| ND1 | CG | CD2 | 110.1° | 106.8° |
| CG | ND1 | HD1 | 126.8° | 126.4° |
| CE1 | NE2 | CD2 | 108.4° | 109.2° |
| NE2 | CE1 | HE1 | 125.8° | 125.6° |
| CG | CB | O2 | 109.4° | 109.5° |
| CG | CB | CA | 110.9° | 109.5° |
| CB | CG | CD2 | 125.1° | 126.6° |
| CG | CB | HB2 | 108.5° | 109.5° |
| O2 | CB | CA | 109.8° | 109.5° |
| O2 | CB | HB2 | 109.8° | 109.5° |
| CB | O2 | H11 | 109.5° | 114.0° |
| CB | CA | C | 109.9° | 109.5° |
| CB | CA | N | 112.4° | 109.5° |
| CB | CA | HA | 108.5° | 109.5° |
| CA | CB | HB2 | 108.4° | 109.4° |
| CG | CD2 | NE2 | 106.5° | 108.0° |
| CG | CD2 | HD2 | 126.8° | 126.0° |
| CA | C | O | 118.3° | 120.0° |
| C | CA | N | 108.0° | 109.5° |
| C | CA | HA | 108.6° | 109.5° |
| CA | C | OXT | 118.1° | 120.0° |
| O | C | OXT | 123.6° | 120.0° |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | HA | 109.3° | 109.5° |
| NE2 | CD2 | HD2 | 126.7° | 126.0° |
| H | N | H2 | 109.5° | 111.0° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CE1 | ND1 | CG | HD1 | 180.0° | 179.8° |
| ND1 | CE1 | NE2 | HE1 | 180.0° | 179.8° |
| CE1 | ND1 | CG | CB | 179.8° | 180.0° |
| CE1 | ND1 | CG | CD2 | 0.3° | 0.2° |
| ND1 | CE1 | NE2 | CD2 | 0.0° | 0.0° |
| CG | ND1 | CE1 | NE2 | 0.2° | 0.1° |
| ND1 | CG | CB | CD2 | 179.4° | 179.7° |
| ND1 | CG | CB | O2 | 132.3° | 144.7° |
| ND1 | CG | CB | CA | 106.4° | 95.3° |
| ND1 | CG | CD2 | NE2 | 0.3° | 0.2° |
| ND1 | CG | CB | HB2 | 12.6° | 24.7° |
| ND1 | CG | CD2 | HD2 | 179.7° | 179.8° |
| CG | ND1 | CE1 | HE1 | 179.9° | 180.0° |
| CE1 | NE2 | CD2 | CG | 0.2° | 0.1° |
| CE1 | NE2 | CD2 | HD2 | 179.8° | 179.9° |
| NE2 | CE1 | ND1 | HD1 | 179.9° | 180.0° |
| CG | CB | O2 | CA | 122.0° | 120.0° |
| CG | CB | O2 | HB2 | 118.9° | 120.1° |
| CG | CB | CA | HB2 | 119.0° | 120.0° |
| CG | CB | CA | C | 179.1° | 175.0° |
| CG | CB | CA | N | 60.6° | 55.0° |
| CB | CG | CD2 | NE2 | 179.8° | 180.0° |
| CG | CB | CA | HA | 60.5° | 65.0° |
| CB | CG | CD2 | HD2 | 0.2° | 0.0° |
| CB | CG | ND1 | HD1 | 0.2° | 0.2° |
| CG | CB | O2 | H11 | 146.0° | 60.0° |
| O2 | CB | CA | HB2 | 120.0° | 120.0° |
| O2 | CB | CG | CD2 | 47.1° | 35.0° |
| O2 | CB | CA | C | 59.8° | 55.0° |
| O2 | CB | CA | N | 60.5° | 65.0° |
| O2 | CB | CA | HA | 178.5° | 175.0° |
| CA | CB | CG | CD2 | 74.2° | 85.0° |
| CB | CA | C | N | 122.9° | 120.0° |
| CB | CA | C | HA | 118.6° | 120.0° |
| CB | CA | C | O | 84.4° | 100.0° |
| CB | CA | N | HA | 120.6° | 120.0° |
| CB | CA | N | H | 180.0° | 60.0° |
| CB | CA | N | H2 | 60.0° | 64.0° |
| CA | CB | O2 | H11 | 24.1° | 60.0° |
| CB | CA | C | OXT | 95.9° | 80.0° |
| CG | CD2 | NE2 | HD2 | 180.0° | 180.0° |
| CD2 | CG | CB | HB2 | 166.9° | 155.1° |
| CD2 | CG | ND1 | HD1 | 179.7° | 180.0° |
| CA | C | O | OXT | 179.6° | 180.0° |
| C | CA | N | HA | 118.0° | 120.0° |
| C | CA | N | H | 58.6° | 60.0° |
| C | CA | N | H2 | 61.4° | 176.0° |
| C | CA | CB | HB2 | 60.1° | 65.0° |
| CA | C | OXT | HXT | 179.7° | 180.0° |
| O | C | CA | N | 38.5° | 20.0° |
| O | C | CA | HA | 157.0° | 140.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | HB2 | 179.5° | 175.0° |
| N | CA | C | OXT | 141.1° | 160.0° |
| CD2 | NE2 | CE1 | HE1 | 180.0° | 179.9° |
| H | N | CA | HA | 59.4° | 180.0° |
| H2 | N | CA | HA | 179.4° | 56.0° |
| HA | CA | CB | HB2 | 58.5° | 55.0° |
| HA | CA | C | OXT | 22.7° | 40.0° |
| HB2 | CB | O2 | H11 | 95.0° | 180.0° |
| HD1 | ND1 | CE1 | HE1 | 0.1° | 0.2° |
