V5A
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.54Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| O5' | V | sing | 1.84Å | 1.67Å | |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| OV2 | V | sing | 1.84Å | 1.57Å | |
| C4 | N3 | doub | 1.33Å | 1.33Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.41Å | Aromatic |
| V | OV1 | doub | 1.58Å | 1.57Å | |
| N3 | C2 | sing | 1.32Å | 1.32Å | Aromatic |
| N7 | C5 | sing | 1.36Å | 1.36Å | Aromatic |
| C5 | C6 | doub | 1.40Å | 1.41Å | Aromatic |
| C2 | N1 | doub | 1.32Å | 1.33Å | Aromatic |
| C6 | N1 | sing | 1.33Å | 1.33Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.38Å | |
| OV2 | H1 | sing | 0.97Å | 0.95Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| O3' | H6 | sing | 0.97Å | 0.95Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| O2' | H8 | sing | 0.97Å | 0.95Å | |
| C1' | H9 | sing | 1.09Å | 1.10Å | |
| C8 | H10 | sing | 1.08Å | 1.08Å | |
| C2 | H11 | sing | 1.08Å | 1.08Å | |
| N6 | H12 | sing | 0.97Å | 1.00Å | |
| N6 | H13 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2' | C2' | C3' | 114.3° | 110.9° |
| O2' | C2' | C1' | 111.7° | 111.0° |
| O2' | C2' | H7 | 110.4° | 110.8° |
| C2' | O2' | H8 | 109.5° | 114.0° |
| O3' | C3' | C2' | 109.4° | 110.5° |
| O3' | C3' | C4' | 109.1° | 110.5° |
| O3' | C3' | H5 | 112.3° | 110.5° |
| C3' | O3' | H6 | 109.5° | 114.0° |
| C2' | C3' | C4' | 104.3° | 104.2° |
| C3' | C2' | C1' | 102.6° | 102.1° |
| C2' | C3' | H5 | 110.6° | 110.5° |
| C3' | C2' | H7 | 108.7° | 110.9° |
| C3' | C4' | O4' | 106.6° | 107.3° |
| C3' | C4' | C5' | 116.0° | 109.9° |
| C3' | C4' | H4 | 107.6° | 110.0° |
| C4' | C3' | H5 | 110.7° | 110.5° |
| C2' | C1' | N9 | 114.4° | 110.6° |
| C2' | C1' | O4' | 105.3° | 103.5° |
| C1' | C2' | H7 | 108.9° | 110.9° |
| C2' | C1' | H9 | 109.2° | 110.6° |
| N9 | C1' | O4' | 106.8° | 110.7° |
| C1' | N9 | C8 | 125.8° | 126.3° |
| C1' | N9 | C4 | 126.7° | 126.3° |
| N9 | C1' | H9 | 110.1° | 110.5° |
| C1' | O4' | C4' | 109.3° | 107.0° |
| O4' | C1' | H9 | 110.9° | 110.8° |
| O4' | C4' | C5' | 109.9° | 109.9° |
| O4' | C4' | H4 | 108.7° | 109.9° |
| C4' | C5' | O5' | 110.6° | 109.5° |
| C4' | C5' | H2 | 109.2° | 109.4° |
| C4' | C5' | H3 | 109.2° | 109.4° |
| C5' | C4' | H4 | 107.9° | 109.8° |
| C8 | N9 | C4 | 107.5° | 107.5° |
| N9 | C8 | N7 | 109.9° | 110.0° |
| N9 | C8 | H10 | 125.1° | 125.0° |
| N9 | C4 | N3 | 135.3° | 135.0° |
| N9 | C4 | C5 | 106.0° | 106.0° |
| C5' | O5' | V | 113.5° | 114.0° |
| O5' | C5' | H2 | 109.2° | 109.5° |
| O5' | C5' | H3 | 109.2° | 109.5° |
| O5' | V | OV2 | 117.6° | 120.0° |
| O5' | V | OV1 | 121.1° | 120.0° |
| C8 | N7 | C5 | 109.5° | 109.4° |
| N7 | C8 | H10 | 125.1° | 125.0° |
| OV2 | V | OV1 | 121.1° | 120.0° |
| V | OV2 | H1 | 109.5° | 114.0° |
| N3 | C4 | C5 | 118.7° | 119.0° |
| C4 | N3 | C2 | 120.7° | 120.7° |
| C4 | C5 | N7 | 107.2° | 107.1° |
| C4 | C5 | C6 | 118.4° | 118.2° |
| N3 | C2 | N1 | 122.5° | 122.5° |
| N3 | C2 | H11 | 118.7° | 118.8° |
| N7 | C5 | C6 | 134.5° | 134.7° |
| C5 | C6 | N1 | 118.8° | 118.5° |
| C5 | C6 | N6 | 120.5° | 120.8° |
| C2 | N1 | C6 | 120.8° | 121.2° |
| N1 | C2 | H11 | 118.7° | 118.8° |
| N1 | C6 | N6 | 120.8° | 120.8° |
| C6 | N6 | H12 | 109.5° | 120.0° |
| C6 | N6 | H13 | 109.5° | 120.0° |
| H2 | C5' | H3 | 109.5° | 109.5° |
| H12 | N6 | H13 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2' | C2' | C3' | O3' | 28.0° | 20.4° |
| O2' | C2' | C3' | C1' | 121.1° | 118.3° |
| O2' | C2' | C3' | H7 | 123.8° | 123.6° |
| O2' | C2' | C3' | C4' | 144.6° | 139.1° |
| O2' | C2' | C1' | H7 | 122.2° | 123.6° |
| O2' | C2' | C1' | N9 | 85.8° | 86.2° |
| O2' | C2' | C1' | O4' | 157.2° | 155.2° |
| O2' | C2' | C3' | H5 | 96.3° | 102.2° |
| O2' | C2' | C1' | H9 | 38.1° | 36.6° |
| O3' | C3' | C2' | C4' | 116.6° | 118.7° |
| O3' | C3' | C2' | H5 | 124.3° | 122.6° |
| O3' | C3' | C4' | H5 | 124.2° | 122.6° |
| O3' | C3' | C2' | C1' | 93.1° | 97.9° |
| O3' | C3' | C4' | O4' | 111.2° | 120.7° |
| O3' | C3' | C4' | C5' | 126.1° | 119.8° |
| O3' | C3' | C4' | H4 | 5.3° | 1.2° |
| O3' | C3' | C2' | H7 | 151.8° | 144.0° |
| C2' | C3' | C4' | H5 | 119.0° | 118.7° |
| C3' | C2' | C1' | H7 | 115.0° | 118.2° |
| C3' | C2' | C1' | N9 | 151.4° | 155.5° |
| C3' | C2' | C1' | O4' | 34.4° | 37.0° |
| C2' | C3' | C4' | O4' | 5.6° | 2.0° |
| C2' | C3' | C4' | C5' | 117.1° | 121.5° |
| C2' | C3' | C4' | H4 | 122.1° | 117.5° |
| C2' | C3' | O3' | H6 | 180.0° | 61.5° |
| C3' | C2' | O2' | H8 | 180.0° | 61.4° |
| C3' | C2' | C1' | H9 | 84.7° | 81.7° |
| C4' | C3' | C2' | C1' | 23.6° | 20.9° |
| C3' | C4' | O4' | C1' | 16.8° | 26.5° |
| C3' | C4' | O4' | C5' | 126.4° | 119.5° |
| C3' | C4' | O4' | H4 | 115.8° | 119.6° |
| C3' | C4' | C5' | H4 | 120.7° | 121.2° |
| C3' | C4' | C5' | O5' | 110.0° | 175.7° |
| C3' | C4' | C5' | H2 | 10.2° | 64.3° |
| C3' | C4' | C5' | H3 | 129.9° | 55.7° |
| C4' | C3' | O3' | H6 | 66.5° | 176.3° |
| C4' | C3' | C2' | H7 | 91.6° | 97.3° |
| C2' | C1' | N9 | O4' | 116.2° | 114.1° |
| C2' | C1' | N9 | H9 | 123.3° | 122.8° |
| C2' | C1' | O4' | H9 | 118.0° | 118.5° |
| C2' | C1' | O4' | C4' | 32.5° | 40.0° |
| C2' | C1' | N9 | C8 | 30.2° | 95.0° |
| C2' | C1' | N9 | C4 | 152.3° | 85.2° |
| C1' | C2' | C3' | H5 | 142.6° | 139.5° |
| C1' | C2' | O2' | H8 | 64.1° | 174.2° |
| N9 | C1' | O4' | H9 | 119.9° | 123.0° |
| N9 | C1' | O4' | C4' | 154.6° | 158.6° |
| C1' | N9 | C8 | C4 | 177.9° | 179.8° |
| C1' | N9 | C8 | N7 | 178.6° | 179.8° |
| C1' | N9 | C4 | N3 | 1.3° | 0.1° |
| C1' | N9 | C4 | C5 | 178.3° | 180.0° |
| N9 | C1' | C2' | H7 | 36.4° | 37.4° |
| C1' | N9 | C8 | H10 | 1.4° | 0.1° |
| C1' | O4' | C4' | C5' | 143.2° | 146.0° |
| O4' | C1' | N9 | C8 | 86.0° | 19.1° |
| O4' | C1' | N9 | C4 | 91.6° | 160.7° |
| C1' | O4' | C4' | H4 | 98.9° | 93.1° |
| O4' | C1' | C2' | H7 | 80.6° | 81.2° |
| O4' | C4' | C5' | H4 | 118.4° | 121.0° |
| O4' | C4' | C5' | O5' | 129.2° | 66.5° |
| O4' | C4' | C5' | H2 | 110.7° | 53.5° |
| O4' | C4' | C5' | H3 | 9.0° | 173.5° |
| O4' | C4' | C3' | H5 | 124.6° | 116.7° |
| C4' | O4' | C1' | H9 | 85.5° | 78.5° |
| C4' | C5' | O5' | H2 | 120.2° | 120.0° |
| C4' | C5' | O5' | H3 | 120.2° | 120.0° |
| C4' | C5' | O5' | V | 168.0° | 180.0° |
| C4' | C5' | H2 | H3 | 119.5° | 120.0° |
| C5' | C4' | C3' | H5 | 2.0° | 2.8° |
| N9 | C8 | N7 | H10 | 180.0° | 179.9° |
| C8 | N9 | C4 | N3 | 179.3° | 179.7° |
| C8 | N9 | C4 | C5 | 0.3° | 0.2° |
| N9 | C8 | N7 | C5 | 0.8° | 0.4° |
| C8 | N9 | C1' | H9 | 153.5° | 142.2° |
| C4 | N9 | C8 | N7 | 0.7° | 0.4° |
| N9 | C4 | N3 | C5 | 179.6° | 179.9° |
| N9 | C4 | N3 | C2 | 179.8° | 180.0° |
| N9 | C4 | C5 | N7 | 0.1° | 0.0° |
| N9 | C4 | C5 | C6 | 179.8° | 179.9° |
| C4 | N9 | C1' | H9 | 28.9° | 37.6° |
| C4 | N9 | C8 | H10 | 179.3° | 179.7° |
| C5' | O5' | V | OV2 | 167.5° | 180.0° |
| C5' | O5' | V | OV1 | 16.9° | 0.0° |
| O5' | C5' | H2 | H3 | 119.5° | 120.0° |
| O5' | C5' | C4' | H4 | 10.8° | 54.5° |
| O5' | V | OV2 | OV1 | 175.6° | 180.0° |
| O5' | V | OV2 | H1 | 175.6° | 180.0° |
| V | O5' | C5' | H2 | 47.9° | 60.0° |
| V | O5' | C5' | H3 | 71.8° | 60.0° |
| C8 | N7 | C5 | C4 | 0.5° | 0.3° |
| C8 | N7 | C5 | C6 | 179.8° | 179.7° |
| N3 | C4 | C5 | N7 | 179.8° | 179.9° |
| N3 | C4 | C5 | C6 | 0.5° | 0.0° |
| C4 | N3 | C2 | N1 | 0.2° | 0.1° |
| C4 | N3 | C2 | H11 | 179.8° | 180.0° |
| C5 | C4 | N3 | C2 | 0.6° | 0.1° |
| C4 | C5 | N7 | C6 | 179.7° | 179.9° |
| C4 | C5 | C6 | N1 | 0.0° | 0.1° |
| C4 | C5 | C6 | N6 | 179.5° | 179.9° |
| OV1 | V | OV2 | H1 | 0.0° | 0.0° |
| N3 | C2 | N1 | H11 | 180.0° | 179.9° |
| N3 | C2 | N1 | C6 | 0.2° | 0.0° |
| N7 | C5 | C6 | N1 | 179.7° | 180.0° |
| N7 | C5 | C6 | N6 | 0.1° | 0.1° |
| C5 | N7 | C8 | H10 | 179.2° | 179.7° |
| C5 | C6 | N1 | C2 | 0.3° | 0.1° |
| C5 | C6 | N1 | N6 | 179.6° | 179.9° |
| C5 | C6 | N6 | H12 | 179.6° | 0.1° |
| C5 | C6 | N6 | H13 | 60.4° | 180.0° |
| C2 | N1 | C6 | N6 | 179.9° | 179.9° |
| C6 | N1 | C2 | H11 | 179.8° | 180.0° |
| N1 | C6 | N6 | H12 | 0.0° | 179.9° |
| N1 | C6 | N6 | H13 | 120.0° | 0.1° |
| C6 | N6 | H12 | H13 | 120.0° | 180.0° |
| H2 | C5' | C4' | H4 | 130.9° | 174.6° |
| H3 | C5' | C4' | H4 | 109.4° | 65.5° |
| H4 | C4' | C3' | H5 | 118.9° | 123.8° |
| H5 | C3' | O3' | H6 | 56.7° | 61.1° |
| H5 | C3' | C2' | H7 | 27.5° | 21.4° |
| H7 | C2' | O2' | H8 | 57.1° | 62.2° |
| H7 | C2' | C1' | H9 | 160.2° | 160.2° |
