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Summary Geometry Related PDB entries

V4W

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O2	C2	sing	1.43Å	1.38Å
C1	O1	doub	1.21Å	1.21Å
C1	C2	sing	1.51Å	1.49Å
C2	C3	sing	1.53Å	1.51Å
O6B	C6	doub	1.21Å	1.15Å
O5	C5	doub	1.21Å	1.18Å
C6	C5	sing	1.49Å	1.46Å
C6	O6A	sing	1.35Å	1.21Å
C3	C4	sing	1.53Å	1.47Å
C3	O3	sing	1.43Å	1.41Å
C5	C4	sing	1.51Å	1.47Å
O2	H1	sing	0.97Å	0.95Å
C1	H2	sing	1.08Å	1.08Å
C2	H3	sing	1.09Å	1.10Å
C3	H4	sing	1.09Å	1.10Å
C4	H5	sing	1.09Å	1.10Å
C4	H6	sing	1.09Å	1.10Å
O3	H7	sing	0.97Å	0.95Å
O6A	H8	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O2	C2	C1	109.3°	109.5°
O2	C2	C3	106.3°	109.4°
C2	O2	H1	109.5°	114.0°
O2	C2	H3	110.3°	109.5°
O1	C1	C2	117.3°	120.0°
O1	C1	H2	121.4°	120.0°
C1	C2	C3	113.7°	109.5°
C2	C1	H2	121.3°	120.0°
C1	C2	H3	108.7°	109.5°
C2	C3	C4	103.8°	109.5°
C2	C3	O3	117.8°	109.4°
C3	C2	H3	108.5°	109.5°
C2	C3	H4	108.4°	109.5°
O6B	C6	C5	116.9°	120.0°
O6B	C6	O6A	110.4°	120.0°
O5	C5	C6	123.3°	120.0°
O5	C5	C4	117.6°	120.0°
C5	C6	O6A	132.7°	120.0°
C6	C5	C4	119.0°	120.0°
C6	O6A	H8	109.5°	116.9°
C4	C3	O3	107.9°	109.5°
C3	C4	C5	100.0°	109.5°
C4	C3	H4	108.8°	109.5°
C3	C4	H5	111.8°	109.5°
C3	C4	H6	111.8°	109.5°
O3	C3	H4	109.8°	109.5°
C3	O3	H7	109.5°	114.0°
C5	C4	H5	111.8°	109.4°
C5	C4	H6	111.8°	109.4°
H5	C4	H6	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O2	C2	C1	O1	152.9°	0.0°
O2	C2	C1	C3	118.6°	120.0°
O2	C2	C1	H3	120.4°	120.0°
O2	C2	C3	H3	118.6°	120.0°
O2	C2	C3	C4	98.0°	60.0°
O2	C2	C3	O3	142.9°	180.0°
O2	C2	C1	H2	27.1°	180.0°
O2	C2	C3	H4	17.5°	60.0°
O1	C1	C2	H2	180.0°	180.0°
O1	C1	C2	C3	88.4°	120.0°
O1	C1	C2	H3	32.5°	120.0°
C1	C2	C3	H3	121.1°	120.0°
C1	C2	C3	C4	141.7°	180.0°
C1	C2	C3	O3	22.6°	60.0°
C1	C2	O2	H1	180.0°	59.9°
C1	C2	C3	H4	102.8°	60.0°
C2	C3	C4	O3	125.7°	120.0°
C2	C3	C4	H4	115.2°	120.0°
C2	C3	O3	H4	124.6°	120.0°
C2	C3	C4	C5	70.3°	175.0°
C3	C2	O2	H1	56.9°	60.1°
C3	C2	C1	H2	91.5°	60.0°
C2	C3	C4	H5	171.2°	65.0°
C2	C3	C4	H6	48.1°	55.1°
C2	C3	O3	H7	180.0°	60.1°
O6B	C6	C5	O5	2.9°	180.0°
O6B	C6	C5	O6A	178.3°	180.0°
O6B	C6	C5	C4	179.6°	0.0°
O6B	C6	O6A	H8	0.0°	0.1°
O5	C5	C6	C4	177.5°	180.0°
O5	C5	C6	O6A	175.4°	0.0°
O5	C5	C4	C3	138.5°	0.0°
O5	C5	C4	H5	103.0°	120.0°
O5	C5	C4	H6	20.1°	120.0°
C6	C5	C4	C3	43.8°	180.0°
C6	C5	C4	H5	74.7°	60.0°
C6	C5	C4	H6	162.2°	60.0°
C5	C6	O6A	H8	178.3°	180.0°
O6A	C6	C5	C4	2.2°	180.0°
C4	C3	O3	H4	118.4°	120.0°
C3	C4	C5	H5	118.5°	120.0°
C3	C4	C5	H6	118.4°	120.0°
C4	C3	C2	H3	20.6°	60.0°
C3	C4	H5	H6	124.4°	120.1°
C4	C3	O3	H7	63.0°	59.9°
O3	C3	C4	C5	163.9°	65.0°
O3	C3	C2	H3	98.5°	60.0°
O3	C3	C4	H5	45.5°	54.9°
O3	C3	C4	H6	77.6°	175.0°
C5	C4	C3	H4	44.9°	55.0°
C5	C4	H5	H6	124.4°	120.0°
H1	O2	C2	H3	60.5°	179.9°
H2	C1	C2	H3	147.5°	60.0°
H3	C2	C3	H4	136.2°	180.0°
H4	C3	C4	H5	73.5°	174.9°
H4	C3	C4	H6	163.3°	65.0°
H4	C3	O3	H7	55.4°	179.9°

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