Summary Geometry PCM/PTM Related PDB entries

V4H

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C14	C11	sing	1.47Å	1.53Å
C12	C11	doub	1.40Å	1.40Å	Aromatic
C12	C13	sing	1.38Å	1.38Å	Aromatic
C11	C10	sing	1.40Å	1.39Å	Aromatic
C13	C08	doub	1.40Å	1.39Å	Aromatic
C10	C09	doub	1.38Å	1.39Å	Aromatic
C08	C09	sing	1.40Å	1.39Å	Aromatic
C08	C07	sing	1.48Å	1.54Å
O15	C07	doub	1.22Å	1.18Å
C07	N06	sing	1.35Å	1.46Å
N06	C16	sing	1.47Å	1.51Å
N06	C05	sing	1.47Å	1.52Å
C16	C02	sing	1.53Å	1.52Å
C05	C04	sing	1.53Å	1.53Å
O01	C02	sing	1.43Å	1.40Å
C02	C03	sing	1.53Å	1.49Å
C03	C04	sing	1.53Å	1.48Å
C02	H1	sing	1.09Å	1.10Å
C03	H2	sing	1.09Å	1.10Å
C03	H3	sing	1.09Å	1.10Å
C04	H4	sing	1.09Å	1.10Å
C04	H5	sing	1.09Å	1.10Å
C05	H6	sing	1.09Å	1.10Å
C05	H7	sing	1.09Å	1.10Å
C09	H8	sing	1.08Å	1.08Å
C10	H9	sing	1.08Å	1.08Å
C12	H10	sing	1.08Å	1.08Å
C13	H11	sing	1.08Å	1.08Å
C14	H12	sing	1.08Å	1.08Å
C16	H15	sing	1.09Å	1.10Å
C16	H16	sing	1.09Å	1.10Å
O01	H17	sing	0.97Å	0.95Å
C14	O1	doub	1.21Å	1.42Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C14	C11	C12	121.0°	120.0°
C14	C11	C10	118.3°	120.0°
C11	C14	H12	121.2°	120.0°
C11	C14	O1	117.6°	120.0°
C11	C12	C13	120.0°	119.9°
C12	C11	C10	120.6°	119.9°
C11	C12	H10	120.0°	120.0°
C12	C13	C08	119.4°	120.1°
C13	C12	H10	120.0°	120.0°
C12	C13	H11	120.3°	120.0°
C11	C10	C09	119.4°	120.0°
C11	C10	H9	120.3°	120.0°
C13	C08	C09	120.8°	120.0°
C13	C08	C07	118.3°	120.0°
C08	C13	H11	120.3°	119.9°
C10	C09	C08	119.7°	120.0°
C10	C09	H8	120.2°	120.0°
C09	C10	H9	120.3°	120.0°
C09	C08	C07	120.9°	120.0°
C08	C09	H8	120.1°	120.0°
C08	C07	O15	118.9°	120.0°
C08	C07	N06	120.4°	120.0°
O15	C07	N06	120.7°	120.1°
C07	N06	C16	121.3°	120.6°
C07	N06	C05	122.7°	120.7°
C16	N06	C05	116.0°	118.7°
N06	C16	C02	114.5°	108.8°
N06	C16	H15	108.2°	109.6°
N06	C16	H16	108.2°	109.7°
N06	C05	C04	118.4°	108.8°
N06	C05	H6	107.2°	109.6°
N06	C05	H7	107.2°	109.7°
C16	C02	O01	106.6°	109.5°
C16	C02	C03	110.1°	109.3°
C16	C02	H1	109.1°	109.5°
C02	C16	H15	108.2°	109.5°
C02	C16	H16	108.2°	109.6°
C05	C04	C03	113.7°	109.3°
C05	C04	H4	108.4°	109.5°
C05	C04	H5	108.4°	109.5°
C04	C05	H6	107.2°	109.6°
C04	C05	H7	107.2°	109.5°
O01	C02	C03	110.8°	109.5°
O01	C02	H1	110.8°	109.5°
C02	O01	H17	109.5°	114.0°
C02	C03	C04	112.5°	109.6°
C03	C02	H1	109.5°	109.5°
C02	C03	H2	108.7°	109.4°
C02	C03	H3	108.7°	109.4°
C04	C03	H2	108.7°	109.4°
C04	C03	H3	108.7°	109.5°
C03	C04	H4	108.4°	109.5°
C03	C04	H5	108.4°	109.5°
H2	C03	H3	109.5°	109.5°
H4	C04	H5	109.5°	109.5°
H6	C05	H7	109.5°	109.6°
H12	C14	O1	121.2°	120.0°
H15	C16	H16	109.5°	109.6°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C14	C11	C12	C10	179.4°	179.9°
C14	C11	C12	C13	179.6°	179.8°
C14	C11	C10	C09	179.1°	180.0°
C14	C11	C10	H9	0.9°	0.0°
C14	C11	C12	H10	0.3°	0.0°
C11	C14	H12	O1	180.0°	179.9°
C11	C12	C13	H10	180.0°	179.8°
C11	C12	C13	C08	0.2°	0.5°
C12	C11	C10	C09	1.5°	0.1°
C12	C11	C10	H9	178.5°	180.0°
C11	C12	C13	H11	179.8°	180.0°
C12	C11	C14	H12	170.9°	0.1°
C12	C11	C14	O1	9.1°	180.0°
C13	C12	C11	C10	1.0°	0.3°
C12	C13	C08	H11	180.0°	179.5°
C12	C13	C08	C09	0.2°	0.6°
C12	C13	C08	C07	179.8°	179.8°
C11	C10	C09	H9	180.0°	180.0°
C11	C10	C09	C08	1.1°	0.1°
C11	C10	C09	H8	178.8°	180.0°
C10	C11	C12	H10	179.0°	180.0°
C10	C11	C14	H12	8.5°	180.0°
C10	C11	C14	O1	171.5°	0.1°
C13	C08	C09	C10	0.3°	0.4°
C13	C08	C09	C07	179.6°	179.6°
C13	C08	C07	O15	75.3°	138.5°
C13	C08	C07	N06	104.7°	41.5°
C13	C08	C09	H8	179.7°	179.7°
C08	C13	C12	H10	179.9°	179.7°
C10	C09	C08	H8	180.0°	179.9°
C10	C09	C08	C07	179.3°	180.0°
C09	C08	C07	O15	105.1°	41.2°
C09	C08	C07	N06	74.9°	138.8°
C08	C09	C10	H9	178.8°	179.9°
C09	C08	C13	H11	179.8°	180.0°
C08	C07	O15	N06	180.0°	180.0°
C08	C07	N06	C16	0.3°	174.2°
C08	C07	N06	C05	179.7°	5.8°
C07	C08	C09	H8	0.8°	0.1°
C07	C08	C13	H11	0.3°	0.3°
O15	C07	N06	C16	179.8°	5.8°
O15	C07	N06	C05	0.3°	174.2°
C07	N06	C16	C05	179.9°	180.0°
C07	N06	C16	C02	178.7°	126.4°
C07	N06	C05	C04	148.8°	126.4°
C07	N06	C05	H6	89.9°	113.8°
C07	N06	C05	H7	27.6°	6.6°
C07	N06	C16	H15	58.0°	6.6°
C07	N06	C16	H16	60.5°	113.7°
N06	C16	C02	H15	120.7°	119.8°
N06	C16	C02	H16	120.7°	120.0°
C16	N06	C05	C04	31.1°	53.6°
N06	C16	C02	O01	166.0°	174.6°
N06	C16	C02	C03	45.8°	54.6°
N06	C16	C02	H1	74.4°	65.3°
C16	N06	C05	H6	90.2°	66.2°
C16	N06	C05	H7	152.4°	173.4°
N06	C16	H15	H16	117.7°	120.4°
C05	N06	C16	C02	1.2°	53.6°
N06	C05	C04	H6	121.3°	119.8°
N06	C05	C04	H7	121.2°	119.9°
N06	C05	C04	C03	12.2°	54.6°
N06	C05	C04	H4	132.8°	174.6°
N06	C05	C04	H5	108.5°	65.3°
N06	C05	H6	H7	115.9°	120.4°
C05	N06	C16	H15	121.9°	173.4°
C05	N06	C16	H16	119.5°	66.3°
C16	C02	O01	C03	119.8°	119.8°
C16	C02	O01	H1	118.5°	120.1°
C16	C02	C03	H1	119.9°	119.9°
C16	C02	C03	C04	66.4°	61.3°
C16	C02	C03	H2	54.1°	58.7°
C16	C02	C03	H3	173.2°	178.6°
C02	C16	H15	H16	117.7°	120.3°
C16	C02	O01	H17	180.0°	60.2°
C05	C04	C03	C02	36.1°	61.3°
C05	C04	C03	H4	120.6°	120.0°
C05	C04	C03	H5	120.6°	120.0°
C05	C04	C03	H2	84.4°	58.7°
C05	C04	C03	H3	156.5°	178.6°
C05	C04	H4	H5	118.1°	120.1°
C04	C05	H6	H7	116.0°	120.2°
O01	C02	C03	H1	122.5°	120.1°
O01	C02	C03	C04	176.0°	178.7°
O01	C02	C03	H2	63.6°	61.3°
O01	C02	C03	H3	55.5°	58.6°
O01	C02	C16	H15	45.3°	65.6°
O01	C02	C16	H16	73.3°	54.7°
C02	C03	C04	H2	120.4°	120.0°
C02	C03	C04	H3	120.4°	120.0°
C02	C03	H2	H3	118.6°	119.9°
C02	C03	C04	H4	84.6°	178.7°
C02	C03	C04	H5	156.7°	58.6°
C03	C02	C16	H15	74.9°	174.4°
C03	C02	C16	H16	166.5°	65.3°
C03	C02	O01	H17	60.2°	180.0°
C04	C03	C02	H1	53.5°	58.6°
C04	C03	H2	H3	118.6°	120.0°
C03	C04	H4	H5	118.1°	120.0°
C03	C04	C05	H6	109.1°	65.2°
C03	C04	C05	H7	133.4°	174.5°
H1	C02	C03	H2	174.0°	178.6°
H1	C02	C03	H3	66.9°	61.5°
H1	C02	C16	H15	164.9°	54.5°
H1	C02	C16	H16	46.4°	174.8°
H1	C02	O01	H17	61.5°	59.9°
H2	C03	C04	H4	155.0°	61.3°
H2	C03	C04	H5	36.2°	178.6°
H3	C03	C04	H4	35.9°	58.6°
H3	C03	C04	H5	82.9°	61.4°
H4	C04	C05	H6	11.5°	54.8°
H4	C04	C05	H7	106.0°	65.5°
H5	C04	C05	H6	130.3°	174.9°
H5	C04	C05	H7	12.8°	54.6°
H8	C09	C10	H9	1.2°	0.0°
H10	C12	C13	H11	0.2°	0.2°

Release date:	2021-06-09
Definition date:	2021-04-12
Last modified:	2024-09-27
Release status:	REL
Processing site:	PDBE
Derived from:	7O6G