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V2S

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OXTCdoub1.21Å1.43Å
OCsing1.34Å1.42Å
CCAsing1.51Å1.53Å
OP1Pdoub1.48Å1.52Å
CAN10sing1.47Å1.46Å
CACBsing1.53Å1.53Å
POP2sing1.61Å1.50Å
PN10sing1.68Å1.65Å
PO5'sing1.61Å1.61Å
CBCGsing1.51Å1.51Å
C5'O5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.52Å
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.53Å
C3'C2'sing1.55Å1.53Å
C4'O4'sing1.44Å1.44Å
CGCD1doub1.38Å1.40ÅAromatic
CGCD2sing1.38Å1.40ÅAromatic
CD1CE1sing1.38Å1.39ÅAromatic
CD2CE2doub1.38Å1.39ÅAromatic
CE1CZdoub1.38Å1.40ÅAromatic
C2'O2'sing1.43Å1.43Å
C2'C1'sing1.55Å1.53Å
O4'C1'sing1.44Å1.44Å
C1'N9sing1.46Å1.50Å
CE2CZsing1.38Å1.40ÅAromatic
N9C8sing1.36Å1.35ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
C8N7doub1.30Å1.36ÅAromatic
C4N3doub1.33Å1.36ÅAromatic
C4C5sing1.40Å1.48ÅAromatic
N3C2sing1.32Å1.35ÅAromatic
N7C5sing1.35Å1.35ÅAromatic
C5C6doub1.41Å1.49ÅAromatic
C2N1doub1.32Å1.33ÅAromatic
N1C6sing1.33Å1.37ÅAromatic
C6N6sing1.38Å1.36Å
OH1sing0.97Å0.95Å
CAH2sing1.09Å1.10Å
CBH3sing1.09Å1.10Å
CBH4sing1.09Å1.10Å
C2H5sing1.08Å1.08Å
OP2H6sing0.97Å0.95Å
N10H7sing1.01Å1.00Å
CD1H8sing1.08Å1.08Å
CE1H9sing1.08Å1.08Å
CZH10sing1.08Å1.08Å
CE2H11sing1.08Å1.08Å
CD2H12sing1.08Å1.08Å
C5'H13sing1.09Å1.10Å
C5'H14sing1.09Å1.10Å
C4'H15sing1.09Å1.10Å
C1'H16sing1.09Å1.10Å
C2'H17sing1.09Å1.10Å
O2'H18sing0.97Å0.95Å
C3'H19sing1.09Å1.10Å
O3'H20sing0.97Å0.95Å
C8H21sing1.08Å1.08Å
N6H22sing0.97Å1.00Å
N6H23sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OXTCO119.6°120.0°
OXTCCA120.0°120.0°
OCCA120.4°120.0°
COH1109.5°117.0°
CCAN10106.5°109.4°
CCACB108.1°109.5°
CCAH2110.7°109.5°
OP1POP2112.9°109.5°
OP1PN10110.2°109.5°
OP1PO5'111.5°109.5°
N10CACB109.0°109.5°
CAN10P122.2°111.0°
N10CAH2111.7°109.4°
CAN10H7106.2°111.0°
CACBCG110.1°109.5°
CBCAH2110.7°109.5°
CACBH3109.3°109.4°
CACBH4109.3°109.4°
OP2PN10108.9°109.5°
OP2PO5'107.8°109.5°
POP2H6109.5°114.0°
N10PO5'105.2°109.5°
PN10H7106.2°111.0°
PO5'C5'120.6°123.0°
CBCGCD1118.3°120.0°
CBCGCD2119.8°120.0°
CGCBH3109.3°109.5°
CGCBH4109.3°109.5°
O5'C5'C4'105.8°109.5°
O5'C5'H13110.4°109.5°
O5'C5'H14110.4°109.4°
C5'C4'C3'109.9°109.9°
C5'C4'O4'111.9°109.9°
C4'C5'H13110.4°109.5°
C4'C5'H14110.4°109.5°
C5'C4'H15108.9°109.9°
O3'C3'C4'109.1°110.5°
O3'C3'C2'111.3°110.4°
O3'C3'H19111.0°110.5°
C3'O3'H20109.5°114.0°
C4'C3'C2'106.2°104.2°
C3'C4'O4'107.2°107.3°
C3'C4'H15108.8°110.1°
C4'C3'H19109.6°110.5°
C3'C2'O2'112.7°110.9°
C3'C2'C1'104.1°102.1°
C3'C2'H17109.5°110.9°
C2'C3'H19109.6°110.5°
C4'O4'C1'108.2°107.0°
O4'C4'H15110.1°109.9°
CD1CGCD2121.8°120.0°
CGCD1CE1119.5°120.0°
CGCD1H8120.2°120.0°
CGCD2CE2118.1°120.0°
CGCD2H12121.0°120.0°
CD1CE1CZ119.2°120.0°
CE1CD1H8120.2°120.0°
CD1CE1H9120.4°120.0°
CD2CE2CZ120.6°120.0°
CD2CE2H11119.7°120.0°
CE2CD2H12121.0°119.9°
CE1CZCE2120.7°120.0°
CZCE1H9120.4°120.0°
CE1CZH10119.6°120.0°
O2'C2'C1'110.1°110.9°
O2'C2'H17110.8°110.8°
C2'O2'H18109.5°114.0°
C2'C1'O4'107.1°103.5°
C2'C1'N9111.2°110.7°
C2'C1'H16106.6°110.7°
C1'C2'H17109.5°110.9°
O4'C1'N9116.8°110.6°
O4'C1'H16107.6°110.6°
C1'N9C8126.7°126.3°
C1'N9C4124.9°126.3°
N9C1'H16107.0°110.6°
CE2CZH10119.7°120.0°
CZCE2H11119.7°120.0°
C8N9C4108.4°107.4°
N9C8N7110.8°109.9°
N9C8H21124.6°125.0°
N9C4N3136.1°134.9°
N9C4C5106.5°106.0°
C8N7C5108.1°109.4°
N7C8H21124.6°125.0°
N3C4C5117.4°119.1°
C4N3C2123.1°120.7°
C4C5N7106.2°107.1°
C4C5C6116.1°118.2°
N3C2N1123.2°122.4°
N3C2H5118.4°118.8°
N7C5C6137.7°134.7°
C5C6N1119.9°118.5°
C5C6N6118.7°120.7°
C2N1C6120.2°121.2°
N1C2H5118.4°118.7°
N1C6N6121.4°120.8°
C6N6H22109.5°120.0°
C6N6H23109.5°120.0°
H3CBH4109.5°109.5°
H13C5'H14109.5°109.5°
H22N6H23109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OXTCOCA179.1°179.8°
OXTCCAN10171.1°0.2°
OXTCCACB71.9°120.3°
OXTCOH10.0°0.3°
OXTCCAH249.5°119.7°
OCCAN108.1°180.0°
OCCACB109.0°60.0°
OCCAH2129.6°60.1°
CCAN10CB116.5°120.1°
CCAN10H2120.9°119.9°
CCACBH2121.4°120.0°
CCAN10P65.1°95.0°
CCACBCG168.8°175.0°
CACOH1179.1°179.9°
CCACBH371.1°65.0°
CCACBH448.7°55.0°
CCAN10H756.6°29.0°
OP1PN10CA21.1°180.0°
OP1POP2N10122.8°120.0°
OP1POP2O5'123.6°120.0°
OP1PN10O5'120.4°120.0°
OP1PO5'C5'61.4°45.0°
OP1POP2H60.0°180.0°
OP1PN10H7100.7°56.0°
N10CACBH2123.2°120.0°
CAN10POP2145.4°60.0°
CAN10PH7121.7°124.0°
CAN10PO5'99.3°60.0°
N10CACBCG75.8°65.0°
N10CACBH344.3°55.0°
N10CACBH4164.1°175.0°
CBCAN10P178.4°144.9°
CACBCGH3120.1°119.9°
CACBCGH4120.1°120.0°
CACBCGCD137.1°90.0°
CACBCGCD2141.6°90.3°
CACBH3H4119.7°119.9°
CBCAN10H759.8°91.1°
OP2PN10O5'115.3°120.0°
OP2PO5'C5'63.1°165.1°
OP2PN10H723.7°176.0°
N10PO5'C5'179.1°75.0°
PN10CAH255.8°25.0°
N10POP2H6122.7°60.0°
PO5'C5'C4'166.4°180.0°
O5'POP2H6123.7°60.0°
O5'PN10H7139.0°64.0°
PO5'C5'H1347.0°59.9°
PO5'C5'H1474.2°60.0°
CBCGCD1CD2178.7°179.7°
CBCGCD1CE1178.0°180.0°
CBCGCD2CE2179.6°179.8°
CGCBCAH247.4°55.0°
CGCBH3H4119.7°120.1°
CBCGCD1H82.0°0.1°
CBCGCD2H120.5°0.0°
O5'C5'C4'H13119.4°120.1°
O5'C5'C4'H14119.4°120.0°
O5'C5'C4'C3'35.4°175.7°
O5'C5'C4'O4'83.5°66.5°
O5'C5'H13H14121.7°120.0°
O5'C5'C4'H15154.5°54.5°
C5'C4'C3'O3'110.2°119.9°
C5'C4'C3'O4'121.8°119.4°
C5'C4'C3'H15119.2°121.1°
C5'C4'C3'C2'129.7°121.5°
C5'C4'O4'H15121.3°121.0°
C5'C4'O4'C1'143.1°145.9°
C4'C5'H13H14121.7°120.0°
C5'C4'C3'H1911.5°2.7°
O3'C3'C4'C2'120.0°118.6°
O3'C3'C4'H19121.7°122.6°
O3'C3'C2'H19123.1°122.6°
O3'C3'C4'O4'128.0°120.7°
O3'C3'C2'O2'9.2°20.4°
O3'C3'C2'C1'110.1°97.8°
O3'C3'C4'H159.0°1.2°
O3'C3'C2'H17132.9°144.0°
C4'C3'C2'H19118.2°118.7°
C3'C4'O4'H15118.2°119.6°
C4'C3'C2'O2'127.8°139.1°
C4'C3'C2'C1'8.5°20.8°
C3'C4'O4'C1'22.6°26.5°
C3'C4'C5'H1384.0°64.2°
C3'C4'C5'H14154.8°55.8°
C4'C3'C2'H17108.5°97.3°
C4'C3'O3'H20180.0°180.0°
C2'C3'C4'O4'8.0°2.1°
C3'C2'O2'C1'115.7°112.7°
C3'C2'O2'H17123.0°123.6°
C3'C2'C1'H17117.0°118.1°
C3'C2'C1'O4'22.2°37.0°
C3'C2'C1'N9151.0°155.5°
C2'C3'C4'H15111.1°117.4°
C3'C2'C1'H1692.7°81.6°
C3'C2'O2'H18180.0°67.3°
C2'C3'O3'H2063.2°65.2°
C4'O4'C1'C2'28.4°40.0°
C4'O4'C1'N9153.8°158.6°
O4'C4'C5'H13157.1°53.6°
O4'C4'C5'H1435.9°173.6°
C4'O4'C1'H1685.9°78.6°
O4'C4'C3'H19110.3°116.7°
CGCD1CE1H8180.0°179.9°
CD1CGCD2CE20.9°0.5°
CGCD1CE1CZ2.8°0.1°
CD1CGCBH3157.2°29.9°
CD1CGCBH483.0°150.0°
CGCD1CE1H9177.2°179.9°
CD1CGCD2H12179.1°179.7°
CD2CGCD1CE10.6°0.3°
CGCD2CE2H12180.0°179.8°
CGCD2CE2CZ0.3°0.4°
CD2CGCBH321.5°149.7°
CD2CGCBH498.3°29.7°
CD2CGCD1H8179.3°179.8°
CGCD2CE2H11179.7°179.7°
CD1CE1CZH9180.0°180.0°
CD1CE1CZCE23.4°0.0°
CD1CE1CZH10176.6°180.0°
CD2CE2CZCE11.9°0.2°
CD2CE2CZH11180.0°179.9°
CD2CE2CZH10178.1°179.8°
CE1CZCE2H10180.0°180.0°
CZCE1CD1H8177.2°180.0°
CE1CZCE2H11178.1°179.9°
O2'C2'C1'H17122.0°123.6°
O2'C2'C1'O4'143.3°155.2°
O2'C2'C1'N988.0°86.3°
O2'C2'C1'H1628.3°36.7°
O2'C2'C3'H19114.0°102.2°
C2'C1'O4'N9125.4°118.6°
C2'C1'O4'H16114.3°118.6°
C2'C1'N9H16116.1°123.0°
C2'C1'N9C80.4°90.5°
C2'C1'N9C4177.1°89.4°
C1'C2'O2'H1864.3°180.0°
C1'C2'C3'H19126.7°139.6°
O4'C1'N9H16120.6°122.9°
O4'C1'N9C8122.9°23.6°
O4'C1'N9C459.5°156.5°
C1'O4'C4'H1595.7°93.1°
O4'C1'C2'H1794.7°81.2°
C1'N9C8C4177.9°179.9°
C1'N9C8N7179.6°180.0°
C1'N9C4N31.7°0.1°
C1'N9C4C5179.7°179.9°
N9C1'C2'H1734.0°37.4°
C1'N9C8H210.4°0.1°
CE2CZCE1H9176.5°180.0°
CZCE2CD2H12179.7°179.7°
N9C8N7H21180.0°180.0°
C8N9C4N3179.6°180.0°
C8N9C4C51.8°0.0°
N9C8N7C52.2°0.1°
C8N9C1'H16116.5°146.5°
C4N9C8N72.5°0.1°
N9C4N3C5178.5°180.0°
N9C4N3C2179.5°179.7°
N9C4C5N70.5°0.0°
N9C4C5C6179.7°180.0°
C4N9C1'H1661.0°33.6°
C4N9C8H21177.5°180.0°
C8N7C5C40.9°0.0°
C8N7C5C6177.9°180.0°
N3C4C5N7179.4°180.0°
N3C4C5C61.4°0.0°
C4N3C2N10.7°0.3°
C4N3C2H5179.3°179.7°
C5C4N3C21.1°0.3°
C4C5N7C6178.9°180.0°
C4C5C6N10.2°0.3°
C4C5C6N6179.2°180.0°
N3C2N1H5180.0°180.0°
N3C2N1C62.1°0.0°
N7C5C6N1178.9°179.7°
N7C5C6N60.4°0.0°
C5N7C8H21177.8°180.0°
C5C6N1C21.6°0.3°
C5C6N1N6179.4°179.7°
C5C6N6H22179.4°0.0°
C5C6N6H2360.6°180.0°
C2N1C6N6179.1°180.0°
C6N1C2H5177.9°180.0°
N1C6N6H220.0°179.7°
N1C6N6H23120.0°0.3°
C6N6H22H23120.0°180.0°
H2CACBH3167.5°175.0°
H2CACBH472.7°65.1°
H2CAN10H7177.6°149.0°
H8CD1CE1H92.8°0.0°
H9CE1CZH103.5°0.0°
H10CZCE2H111.9°0.1°
H11CE2CD2H120.2°0.1°
H13C5'C4'H1535.1°174.5°
H14C5'C4'H1586.0°65.5°
H15C4'C3'H19130.7°123.8°
H16C1'C2'H17150.3°160.3°
H17C2'O2'H1857.0°56.3°
H17C2'C3'H199.8°21.4°
H19C3'O3'H2059.2°57.3°

248335

PDB entries from 2026-01-28

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