V2P
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CD | CG | sing | 1.55Å | 1.53Å | |
| CD | N | sing | 1.48Å | 1.48Å | |
| O1A | PA | doub | 1.48Å | 1.48Å | |
| CG | CB | sing | 1.55Å | 1.54Å | |
| O | C | doub | 1.21Å | 1.26Å | |
| N | PA | sing | 1.68Å | 1.59Å | |
| N | CA | sing | 1.47Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.47Å | |
| PA | O5' | sing | 1.61Å | 1.58Å | |
| CB | CA | sing | 1.54Å | 1.56Å | |
| C | CA | sing | 1.51Å | 1.55Å | |
| C | OXT | sing | 1.34Å | 1.26Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C4' | C3' | sing | 1.55Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.54Å | 1.51Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| C2' | O2' | sing | 1.43Å | 1.44Å | |
| C2' | C1' | sing | 1.54Å | 1.57Å | |
| C1' | N9 | sing | 1.47Å | 1.53Å | |
| N3 | C2 | doub | 1.32Å | 1.39Å | Aromatic |
| N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.32Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.40Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.34Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.34Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.36Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.32Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.31Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.33Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C8 | H2 | sing | 1.08Å | 1.08Å | |
| CA | H3 | sing | 1.09Å | 1.10Å | |
| CB | H4 | sing | 1.09Å | 1.10Å | |
| CB | H5 | sing | 1.09Å | 1.10Å | |
| CG | H6 | sing | 1.09Å | 1.10Å | |
| CG | H7 | sing | 1.09Å | 1.10Å | |
| OXT | H8 | sing | 0.97Å | 0.95Å | |
| CD | H9 | sing | 1.09Å | 1.10Å | |
| CD | H10 | sing | 1.09Å | 1.10Å | |
| O2A | H11 | sing | 0.97Å | 0.95Å | |
| C5' | H12 | sing | 1.09Å | 1.10Å | |
| C5' | H13 | sing | 1.09Å | 1.10Å | |
| C4' | H14 | sing | 1.09Å | 1.10Å | |
| C3' | H15 | sing | 1.09Å | 1.10Å | |
| O3' | H16 | sing | 0.97Å | 0.95Å | |
| C2' | H17 | sing | 1.09Å | 1.10Å | |
| O2' | H18 | sing | 0.97Å | 0.95Å | |
| C1' | H19 | sing | 1.09Å | 1.10Å | |
| N6 | H20 | sing | 0.97Å | 1.00Å | |
| N6 | H21 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CG | CD | N | 105.1° | 104.8° |
| CD | CG | CB | 103.5° | 101.6° |
| CD | CG | H6 | 111.0° | 111.0° |
| CD | CG | H7 | 111.0° | 111.0° |
| CG | CD | H9 | 110.5° | 110.4° |
| CG | CD | H10 | 110.6° | 110.4° |
| CD | N | PA | 121.5° | 111.0° |
| CD | N | CA | 111.6° | 108.6° |
| N | CD | H9 | 110.5° | 110.4° |
| N | CD | H10 | 110.6° | 110.4° |
| O1A | PA | N | 102.5° | 109.5° |
| O1A | PA | O2A | 122.2° | 109.5° |
| O1A | PA | O5' | 103.0° | 109.5° |
| CG | CB | CA | 104.4° | 103.0° |
| CG | CB | H4 | 110.7° | 110.7° |
| CG | CB | H5 | 110.7° | 110.9° |
| CB | CG | H6 | 110.9° | 111.0° |
| CB | CG | H7 | 110.9° | 111.0° |
| O | C | CA | 117.2° | 120.0° |
| O | C | OXT | 125.5° | 120.0° |
| PA | N | CA | 124.9° | 111.0° |
| N | PA | O2A | 104.8° | 109.5° |
| N | PA | O5' | 116.1° | 109.4° |
| N | CA | CB | 104.1° | 107.2° |
| N | CA | C | 110.5° | 109.9° |
| N | CA | H3 | 110.8° | 109.9° |
| O2A | PA | O5' | 108.8° | 109.5° |
| PA | O2A | H11 | 109.5° | 114.0° |
| PA | O5' | C5' | 109.5° | 123.0° |
| CB | CA | C | 111.9° | 109.9° |
| CB | CA | H3 | 109.7° | 110.0° |
| CA | CB | H4 | 110.7° | 110.7° |
| CA | CB | H5 | 110.7° | 110.7° |
| CA | C | OXT | 117.1° | 120.0° |
| C | CA | H3 | 109.9° | 109.9° |
| C | OXT | H8 | 109.5° | 117.0° |
| O5' | C5' | C4' | 114.8° | 109.5° |
| O5' | C5' | H12 | 108.1° | 109.5° |
| O5' | C5' | H13 | 108.1° | 109.4° |
| C5' | C4' | C3' | 110.6° | 110.4° |
| C5' | C4' | O4' | 112.5° | 110.3° |
| C4' | C5' | H12 | 108.1° | 109.5° |
| C4' | C5' | H13 | 108.1° | 109.5° |
| C5' | C4' | H14 | 108.1° | 110.4° |
| C3' | C4' | O4' | 108.3° | 104.8° |
| C4' | C3' | O3' | 109.9° | 110.5° |
| C4' | C3' | C2' | 102.0° | 104.1° |
| C3' | C4' | H14 | 108.3° | 110.4° |
| C4' | C3' | H15 | 111.0° | 110.5° |
| C4' | O4' | C1' | 108.7° | 105.2° |
| O4' | C4' | H14 | 108.9° | 110.5° |
| O3' | C3' | C2' | 110.3° | 110.5° |
| O3' | C3' | H15 | 112.1° | 110.4° |
| C3' | O3' | H16 | 109.5° | 114.0° |
| C3' | C2' | O2' | 109.8° | 110.5° |
| C3' | C2' | C1' | 104.0° | 104.1° |
| C2' | C3' | H15 | 111.1° | 110.7° |
| C3' | C2' | H17 | 110.1° | 110.5° |
| O4' | C1' | C2' | 103.4° | 104.8° |
| O4' | C1' | N9 | 112.1° | 110.3° |
| O4' | C1' | H19 | 110.9° | 110.4° |
| O2' | C2' | C1' | 112.4° | 110.5° |
| O2' | C2' | H17 | 111.0° | 110.4° |
| C2' | O2' | H18 | 109.5° | 114.0° |
| C2' | C1' | N9 | 111.1° | 110.4° |
| C1' | C2' | H17 | 109.3° | 110.7° |
| C2' | C1' | H19 | 109.3° | 110.4° |
| C1' | N9 | C4 | 119.5° | 126.3° |
| C1' | N9 | C8 | 132.2° | 126.3° |
| N9 | C1' | H19 | 109.9° | 110.4° |
| C2 | N3 | C4 | 119.5° | 120.7° |
| N3 | C2 | N1 | 115.5° | 122.4° |
| N3 | C2 | H1 | 122.3° | 118.8° |
| N3 | C4 | N9 | 130.1° | 134.9° |
| N3 | C4 | C5 | 123.0° | 119.1° |
| C4 | N9 | C8 | 108.3° | 107.4° |
| N9 | C4 | C5 | 107.0° | 106.0° |
| N9 | C8 | N7 | 108.5° | 109.9° |
| N9 | C8 | H2 | 125.7° | 125.0° |
| C2 | N1 | C6 | 122.2° | 121.3° |
| N1 | C2 | H1 | 122.3° | 118.8° |
| C4 | C5 | N7 | 109.4° | 107.2° |
| C4 | C5 | C6 | 119.1° | 118.2° |
| C8 | N7 | C5 | 106.8° | 109.5° |
| N7 | C8 | H2 | 125.7° | 125.1° |
| N1 | C6 | C5 | 120.8° | 118.4° |
| N1 | C6 | N6 | 124.1° | 120.8° |
| N7 | C5 | C6 | 131.5° | 134.7° |
| C5 | C6 | N6 | 115.2° | 120.8° |
| C6 | N6 | H20 | 109.5° | 120.0° |
| C6 | N6 | H21 | 109.5° | 120.1° |
| H4 | CB | H5 | 109.5° | 110.6° |
| H6 | CG | H7 | 109.5° | 110.8° |
| H9 | CD | H10 | 109.5° | 110.4° |
| H12 | C5' | H13 | 109.5° | 109.5° |
| H20 | N6 | H21 | 109.5° | 119.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CG | CD | N | H9 | 119.3° | 118.9° |
| CG | CD | N | H10 | 119.3° | 118.8° |
| CD | CG | CB | H6 | 119.1° | 118.1° |
| CD | CG | CB | H7 | 119.1° | 118.1° |
| CG | CD | N | PA | 149.5° | 146.4° |
| CG | CD | N | CA | 15.2° | 24.1° |
| CD | CG | CB | CA | 33.6° | 35.7° |
| CD | CG | CB | H4 | 152.8° | 154.0° |
| CD | CG | CB | H5 | 85.6° | 82.8° |
| CD | CG | H6 | H7 | 122.8° | 123.8° |
| CG | CD | H9 | H10 | 122.0° | 122.3° |
| CD | N | PA | O1A | 83.9° | 60.8° |
| N | CD | CG | CB | 30.0° | 37.1° |
| CD | N | PA | CA | 162.6° | 120.8° |
| CD | N | PA | O2A | 44.6° | 179.2° |
| CD | N | PA | O5' | 164.7° | 59.2° |
| CD | N | CA | CB | 6.0° | 1.0° |
| CD | N | CA | C | 126.2° | 120.4° |
| CD | N | CA | H3 | 111.8° | 118.5° |
| N | CD | CG | H6 | 89.1° | 81.0° |
| N | CD | CG | H7 | 149.0° | 155.3° |
| N | CD | H9 | H10 | 122.0° | 122.3° |
| O1A | PA | N | O2A | 128.5° | 120.0° |
| O1A | PA | N | O5' | 111.4° | 120.0° |
| O1A | PA | N | CA | 113.5° | 60.0° |
| O1A | PA | O2A | O5' | 119.6° | 120.0° |
| O1A | PA | O5' | C5' | 57.6° | 45.0° |
| O1A | PA | O2A | H11 | 0.0° | 180.0° |
| CG | CB | CA | N | 24.6° | 22.3° |
| CG | CB | CA | H4 | 119.2° | 118.3° |
| CG | CB | CA | H5 | 119.2° | 118.6° |
| CG | CB | CA | C | 143.8° | 97.1° |
| CG | CB | CA | H3 | 94.0° | 141.8° |
| CG | CB | H4 | H5 | 122.3° | 123.3° |
| CB | CG | H6 | H7 | 122.7° | 123.9° |
| CB | CG | CD | H9 | 89.3° | 81.8° |
| CB | CG | CD | H10 | 149.3° | 155.9° |
| O | C | CA | N | 36.0° | 0.3° |
| O | C | CA | CB | 79.4° | 117.5° |
| O | C | CA | OXT | 175.5° | 179.8° |
| O | C | CA | H3 | 158.5° | 121.3° |
| O | C | OXT | H8 | 0.0° | 0.2° |
| N | PA | O2A | O5' | 124.8° | 120.0° |
| PA | N | CA | CB | 170.1° | 123.2° |
| PA | N | CA | C | 69.7° | 117.3° |
| N | PA | O5' | C5' | 168.8° | 75.0° |
| PA | N | CA | H3 | 52.2° | 3.7° |
| PA | N | CD | H9 | 91.2° | 27.5° |
| PA | N | CD | H10 | 30.2° | 94.8° |
| N | PA | O2A | H11 | 115.5° | 60.0° |
| CA | N | PA | O2A | 118.0° | 60.0° |
| CA | N | PA | O5' | 2.1° | 180.0° |
| N | CA | CB | C | 119.3° | 119.4° |
| N | CA | CB | H3 | 118.6° | 119.4° |
| N | CA | C | H3 | 122.6° | 121.0° |
| N | CA | C | OXT | 139.5° | 180.0° |
| N | CA | CB | H4 | 143.8° | 140.7° |
| N | CA | CB | H5 | 94.6° | 96.3° |
| CA | N | CD | H9 | 104.1° | 94.8° |
| CA | N | CD | H10 | 134.5° | 142.9° |
| O2A | PA | O5' | C5' | 73.3° | 165.0° |
| PA | O5' | C5' | C4' | 158.8° | 179.9° |
| O5' | PA | O2A | H11 | 119.6° | 60.0° |
| PA | O5' | C5' | H12 | 38.0° | 60.0° |
| PA | O5' | C5' | H13 | 80.4° | 59.9° |
| CB | CA | C | H3 | 122.0° | 121.2° |
| CB | CA | C | OXT | 105.0° | 62.2° |
| CA | CB | H4 | H5 | 122.3° | 123.1° |
| CA | CB | CG | H6 | 85.4° | 82.4° |
| CA | CB | CG | H7 | 152.7° | 153.8° |
| C | CA | CB | H4 | 97.0° | 21.2° |
| C | CA | CB | H5 | 24.6° | 144.3° |
| CA | C | OXT | H8 | 175.1° | 179.9° |
| OXT | C | CA | H3 | 17.0° | 59.0° |
| O5' | C5' | C4' | H12 | 120.8° | 120.0° |
| O5' | C5' | C4' | H13 | 120.8° | 119.9° |
| O5' | C5' | C4' | C3' | 31.1° | 175.0° |
| O5' | C5' | C4' | O4' | 90.1° | 69.6° |
| O5' | C5' | H12 | H13 | 117.5° | 119.9° |
| O5' | C5' | C4' | H14 | 149.5° | 52.8° |
| C5' | C4' | C3' | O4' | 123.7° | 118.8° |
| C5' | C4' | C3' | H14 | 118.3° | 122.3° |
| C5' | C4' | O4' | H14 | 119.9° | 122.3° |
| C5' | C4' | C3' | O3' | 142.7° | 98.6° |
| C5' | C4' | C3' | C2' | 100.2° | 142.8° |
| C5' | C4' | O4' | C1' | 121.1° | 159.3° |
| C4' | C5' | H12 | H13 | 117.6° | 120.0° |
| C5' | C4' | C3' | H15 | 18.2° | 23.9° |
| C3' | C4' | O4' | H14 | 117.6° | 118.9° |
| C4' | C3' | O3' | C2' | 111.7° | 114.6° |
| C4' | C3' | O3' | H15 | 123.9° | 122.6° |
| C4' | C3' | C2' | H15 | 118.3° | 118.7° |
| C3' | C4' | O4' | C1' | 1.4° | 40.5° |
| C4' | C3' | C2' | O2' | 155.8° | 118.6° |
| C4' | C3' | C2' | C1' | 35.3° | 0.0° |
| C3' | C4' | C5' | H12 | 89.7° | 64.9° |
| C3' | C4' | C5' | H13 | 151.9° | 55.1° |
| C4' | C3' | O3' | H16 | 180.0° | 180.0° |
| C4' | C3' | C2' | H17 | 81.7° | 118.8° |
| O4' | C4' | C3' | O3' | 93.5° | 142.7° |
| O4' | C4' | C3' | C2' | 23.5° | 24.0° |
| C4' | O4' | C1' | C2' | 20.5° | 40.5° |
| C4' | O4' | C1' | N9 | 140.3° | 159.4° |
| O4' | C4' | C5' | H12 | 149.1° | 50.4° |
| O4' | C4' | C5' | H13 | 30.6° | 170.4° |
| O4' | C4' | C3' | H15 | 141.9° | 94.8° |
| C4' | O4' | C1' | H19 | 96.5° | 78.4° |
| O3' | C3' | C2' | H15 | 124.9° | 122.7° |
| O3' | C3' | C2' | O2' | 39.0° | 0.0° |
| O3' | C3' | C2' | C1' | 81.4° | 118.6° |
| O3' | C3' | C4' | H14 | 24.4° | 23.7° |
| O3' | C3' | C2' | H17 | 161.6° | 122.5° |
| C3' | C2' | C1' | O4' | 35.3° | 24.0° |
| C3' | C2' | O2' | C1' | 115.3° | 114.7° |
| C3' | C2' | O2' | H17 | 122.0° | 122.6° |
| C3' | C2' | C1' | H17 | 117.5° | 118.7° |
| C3' | C2' | C1' | N9 | 155.7° | 142.8° |
| C2' | C3' | C4' | H14 | 141.5° | 94.9° |
| C2' | C3' | O3' | H16 | 68.3° | 65.4° |
| C3' | C2' | O2' | H18 | 180.0° | 61.5° |
| C3' | C2' | C1' | H19 | 82.9° | 94.9° |
| O4' | C1' | C2' | O2' | 154.0° | 142.6° |
| O4' | C1' | C2' | N9 | 120.4° | 118.8° |
| O4' | C1' | C2' | H19 | 118.1° | 118.9° |
| O4' | C1' | N9 | H19 | 123.7° | 122.3° |
| O4' | C1' | N9 | C4 | 124.0° | 156.4° |
| O4' | C1' | N9 | C8 | 54.2° | 23.5° |
| C1' | O4' | C4' | H14 | 119.0° | 78.4° |
| O4' | C1' | C2' | H17 | 82.3° | 94.7° |
| O2' | C2' | C1' | H17 | 123.7° | 122.6° |
| O2' | C2' | C1' | N9 | 85.6° | 98.6° |
| O2' | C2' | C3' | H15 | 85.9° | 122.6° |
| O2' | C2' | C1' | H19 | 35.9° | 23.7° |
| C2' | C1' | N9 | H19 | 121.1° | 122.3° |
| C2' | C1' | N9 | C4 | 8.8° | 88.2° |
| C2' | C1' | N9 | C8 | 169.3° | 91.9° |
| C1' | C2' | C3' | H15 | 153.6° | 118.7° |
| C1' | C2' | O2' | H18 | 64.7° | 176.1° |
| C1' | N9 | C4 | N3 | 1.0° | 0.4° |
| C1' | N9 | C4 | C8 | 178.5° | 179.9° |
| C1' | N9 | C4 | C5 | 178.6° | 179.9° |
| C1' | N9 | C8 | N7 | 179.0° | 180.0° |
| C1' | N9 | C8 | H2 | 1.0° | 0.1° |
| N9 | C1' | C2' | H17 | 38.2° | 24.1° |
| C2 | N3 | C4 | N9 | 179.6° | 179.7° |
| N3 | C2 | N1 | H1 | 180.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.1° | 0.0° |
| N3 | C2 | N1 | C6 | 1.2° | 0.3° |
| N3 | C4 | N9 | C5 | 179.6° | 179.7° |
| N3 | C4 | N9 | C8 | 179.5° | 179.7° |
| C4 | N3 | C2 | N1 | 0.7° | 0.0° |
| N3 | C4 | C5 | N7 | 179.8° | 179.7° |
| N3 | C4 | C5 | C6 | 0.0° | 0.3° |
| C4 | N3 | C2 | H1 | 179.3° | 179.7° |
| C4 | N9 | C8 | N7 | 0.7° | 0.1° |
| N9 | C4 | C5 | N7 | 0.6° | 0.0° |
| N9 | C4 | C5 | C6 | 179.6° | 180.0° |
| C4 | N9 | C8 | H2 | 179.2° | 180.0° |
| C4 | N9 | C1' | H19 | 112.3° | 34.1° |
| C8 | N9 | C4 | C5 | 0.1° | 0.0° |
| N9 | C8 | N7 | H2 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 1.1° | 0.1° |
| C8 | N9 | C1' | H19 | 69.6° | 145.8° |
| C2 | N1 | C6 | C5 | 1.1° | 0.5° |
| C2 | N1 | C6 | N6 | 179.9° | 180.0° |
| C4 | C5 | N7 | C8 | 1.1° | 0.0° |
| C4 | C5 | C6 | N1 | 0.5° | 0.5° |
| C4 | C5 | N7 | C6 | 179.7° | 180.0° |
| C4 | C5 | C6 | N6 | 179.6° | 180.0° |
| C8 | N7 | C5 | C6 | 179.2° | 179.9° |
| N1 | C6 | C5 | N7 | 179.8° | 179.5° |
| N1 | C6 | C5 | N6 | 179.1° | 179.5° |
| C6 | N1 | C2 | H1 | 178.8° | 180.0° |
| N1 | C6 | N6 | H20 | 0.0° | 179.4° |
| N1 | C6 | N6 | H21 | 120.0° | 0.5° |
| N7 | C5 | C6 | N6 | 0.7° | 0.0° |
| C5 | N7 | C8 | H2 | 178.9° | 180.0° |
| C5 | C6 | N6 | H20 | 179.0° | 0.0° |
| C5 | C6 | N6 | H21 | 60.9° | 179.9° |
| C6 | N6 | H20 | H21 | 120.0° | 179.9° |
| H3 | CA | CB | H4 | 25.2° | 99.9° |
| H3 | CA | CB | H5 | 146.7° | 23.1° |
| H4 | CB | CG | H6 | 33.8° | 35.9° |
| H4 | CB | CG | H7 | 88.1° | 87.8° |
| H5 | CB | CG | H6 | 155.4° | 159.1° |
| H5 | CB | CG | H7 | 33.5° | 35.3° |
| H6 | CG | CD | H9 | 151.7° | 160.1° |
| H6 | CG | CD | H10 | 30.3° | 37.8° |
| H7 | CG | CD | H9 | 29.7° | 36.4° |
| H7 | CG | CD | H10 | 91.7° | 85.9° |
| H12 | C5' | C4' | H14 | 28.8° | 172.8° |
| H13 | C5' | C4' | H14 | 89.7° | 67.2° |
| H14 | C4' | C3' | H15 | 100.1° | 146.2° |
| H15 | C3' | O3' | H16 | 56.1° | 57.4° |
| H15 | C3' | C2' | H17 | 36.6° | 0.1° |
| H17 | C2' | O2' | H18 | 58.1° | 61.1° |
| H17 | C2' | C1' | H19 | 159.6° | 146.4° |
