Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

V1O

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C4Osing1.43Å1.44Å
OC3sing1.36Å1.37Å
BRCsing1.97Å1.95Å
CC1sing1.53Å1.51Å
C1C2sing1.51Å1.52Å
C3C2doub1.39Å1.40ÅAromatic
C3C5sing1.38Å1.39ÅAromatic
C2C15sing1.39Å1.39ÅAromatic
C5C6doub1.40Å1.40ÅAromatic
C15O3sing1.36Å1.36Å
C15C14doub1.38Å1.38ÅAromatic
C6C14sing1.40Å1.39ÅAromatic
C6Nsing1.37Å1.46Å
O3C16sing1.43Å1.41Å
NN1doub1.29Å1.26Å
N1C7sing1.37Å1.46Å
C13C7doub1.40Å1.39ÅAromatic
C13C12sing1.38Å1.39ÅAromatic
C7C8sing1.40Å1.39ÅAromatic
C12C10doub1.39Å1.39ÅAromatic
C8C9doub1.38Å1.39ÅAromatic
C10C9sing1.39Å1.41ÅAromatic
C10O2sing1.36Å1.37Å
C9O1sing1.36Å1.36Å
O2C11sing1.43Å1.44Å
C8H1sing1.08Å1.08Å
C11H2sing1.09Å1.10Å
C11H3sing1.09Å1.10Å
C11H4sing1.09Å1.10Å
C12H13sing1.08Å1.08Å
O1H5sing0.97Å0.95Å
C1H6sing1.09Å1.10Å
C1H7sing1.09Å1.10Å
C4H8sing1.09Å1.10Å
C4H9sing1.09Å1.10Å
C4H10sing1.09Å1.10Å
C5H11sing1.08Å1.08Å
CHsing1.09Å1.10Å
CH19sing1.09Å1.10Å
C13H14sing1.08Å1.08Å
C14H15sing1.08Å1.08Å
C16H18sing1.09Å1.10Å
C16H17sing1.09Å1.10Å
C16H16sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4OC3118.7°117.0°
OC4H8109.5°109.5°
OC4H9109.5°109.4°
OC4H10109.5°109.5°
OC3C2115.2°119.9°
OC3C5123.6°120.0°
BRCC1112.8°109.4°
BRCH108.7°109.5°
BRCH19108.7°109.5°
CC1C2112.0°109.4°
CC1H6108.8°109.4°
CC1H7108.8°109.5°
C1CH108.6°109.4°
C1CH19108.6°109.5°
C1C2C3131.0°119.9°
C1C2C15111.0°119.9°
C2C1H6108.8°109.5°
C2C1H7108.8°109.5°
C2C3C5121.1°120.1°
C3C2C15117.2°120.2°
C3C5C6119.6°119.9°
C3C5H11120.2°120.0°
C2C15O3113.6°120.0°
C2C15C14121.4°120.1°
C5C6C14119.4°119.8°
C5C6N122.6°120.1°
C6C5H11120.2°120.1°
O3C15C14122.3°119.9°
C15O3C16118.9°117.0°
C15C14C6119.9°119.9°
C15C14H15120.0°120.1°
C14C6N117.9°120.1°
C6C14H15120.1°120.0°
C6NN1116.5°120.0°
O3C16H18109.5°109.5°
O3C16H17109.5°109.4°
O3C16H16109.5°109.5°
NN1C7118.2°120.0°
N1C7C13118.4°120.0°
N1C7C8122.0°120.1°
C7C13C12120.7°119.9°
C13C7C8119.5°119.9°
C7C13H14119.7°120.0°
C13C12C10119.8°120.2°
C13C12H13120.1°119.9°
C12C13H14119.7°120.0°
C7C8C9120.3°119.8°
C7C8H1119.8°120.1°
C12C10C9120.1°120.2°
C12C10O2125.0°119.9°
C10C12H13120.1°119.9°
C8C9C10119.5°120.0°
C8C9O1117.7°120.0°
C9C8H1119.9°120.1°
C9C10O2115.0°119.9°
C10C9O1122.7°120.0°
C10O2C11118.4°117.0°
C9O1H5109.5°114.0°
O2C11H2109.5°109.5°
O2C11H3109.4°109.5°
O2C11H4109.5°109.5°
H2C11H3109.5°109.5°
H2C11H4109.4°109.5°
H3C11H4109.5°109.4°
H6C1H7109.5°109.5°
H8C4H9109.5°109.5°
H8C4H10109.4°109.5°
H9C4H10109.5°109.5°
HCH19109.5°109.5°
H18C16H17109.5°109.5°
H18C16H16109.5°109.6°
H17C16H16109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4OC3C269.4°174.9°
C4OC3C5112.6°5.1°
OC4H8H9120.0°120.0°
OC4H8H10120.0°120.0°
OC4H9H10120.0°120.0°
OC3C2C116.4°0.0°
OC3C2C5178.1°180.0°
OC3C2C15174.4°179.8°
OC3C5C6176.1°180.0°
C3OC4H8180.0°175.2°
C3OC4H960.0°55.2°
C3OC4H1060.0°64.8°
OC3C5H114.0°0.1°
BRCC1H120.5°119.9°
BRCC1H19120.5°120.0°
BRCC1C2151.2°180.0°
BRCC1H688.5°60.1°
BRCC1H730.8°60.0°
BRCHH19118.5°120.1°
CC1C2H6120.4°119.9°
CC1C2H7120.4°120.0°
CC1C2C3103.9°89.7°
CC1C2C1586.4°90.0°
CC1H6H7118.9°120.0°
C1CHH19118.5°120.0°
C1C2C3C15169.2°179.7°
C1C2C3C5161.7°180.0°
C1C2C15O340.3°0.0°
C1C2C15C14158.1°179.7°
C2C1H6H7118.8°120.1°
C2C1CH30.7°60.1°
C2C1CH1988.3°60.0°
C2C3C5C61.9°0.0°
C3C2C15O3148.5°179.8°
C3C2C15C1413.2°0.5°
C3C2C1H616.5°30.2°
C3C2C1H7135.7°150.3°
C2C3C5H11178.1°179.9°
C5C3C2C157.5°0.2°
C3C5C6H11180.0°179.9°
C3C5C6C145.9°0.0°
C3C5C6N173.8°180.0°
C2C15O3C14161.4°179.7°
C2C15C14C69.4°0.5°
C2C15O3C16132.3°175.1°
C15C2C1H6153.3°150.0°
C15C2C1H734.0°30.0°
C2C15C14H15170.6°179.8°
C5C6C14C150.4°0.3°
C5C6C14N179.8°180.0°
C5C6NN192.1°17.0°
C5C6C14H15179.6°179.9°
O3C15C14C6150.6°179.8°
O3C15C14H1529.4°0.1°
C15O3C16H18180.0°55.2°
C15O3C16H1760.0°64.8°
C15O3C16H1660.0°175.2°
C15C14C6H15180.0°179.7°
C15C14C6N179.3°179.7°
C14C15O3C1666.2°5.2°
C14C6NN188.2°163.0°
C14C6C5H11174.1°179.9°
C6NN1C774.8°31.8°
NC6C5H116.2°0.1°
NC6C14H150.6°0.0°
O3C16H18H17120.0°119.9°
O3C16H18H16120.0°120.0°
O3C16H17H16120.0°120.0°
NN1C7C1389.9°163.7°
NN1C7C892.8°16.6°
N1C7C13C8177.4°179.7°
N1C7C13C12175.7°179.7°
N1C7C8C9176.6°179.7°
N1C7C8H13.5°0.3°
N1C7C13H144.3°0.2°
C7C13C12H14180.0°179.9°
C7C13C12C100.6°0.0°
C13C7C8C90.8°0.0°
C13C7C8H1179.2°180.0°
C7C13C12H13179.4°180.0°
C12C13C7C81.7°0.0°
C13C12C10H13180.0°180.0°
C13C12C10C91.4°0.0°
C13C12C10O2177.6°180.0°
C7C8C9H1180.0°180.0°
C7C8C9C101.3°0.0°
C7C8C9O1176.5°180.0°
C8C7C13H14178.3°179.9°
C12C10C9C82.3°0.0°
C12C10C9O2179.1°180.0°
C12C10C9O1175.3°180.0°
C12C10O2C11109.1°5.2°
C10C12C13H14179.4°179.9°
C8C9C10O1177.6°180.0°
C8C9C10O2176.7°180.0°
C8C9O1H5180.0°95.0°
C9C10O2C1169.9°174.9°
C10C9C8H1178.8°180.0°
C9C10C12H13178.6°180.0°
C10C9O1H52.3°85.1°
O2C10C9O15.6°0.0°
C10O2C11H2180.0°65.0°
C10O2C11H360.0°55.0°
C10O2C11H460.0°175.0°
O2C10C12H132.5°0.1°
O1C9C8H13.5°0.0°
O2C11H2H3120.0°120.1°
O2C11H2H4120.0°120.0°
O2C11H3H4120.0°120.0°
H2C11H3H4120.0°120.0°
H13C12C13H140.6°0.1°
H6C1CH151.0°180.0°
H6C1CH1932.0°60.0°
H7C1CH89.7°60.0°
H7C1CH19151.3°180.0°
H8C4H9H10119.9°120.0°
H18C16H17H16120.0°120.1°

247536

PDB entries from 2026-01-14

PDB statisticsPDBj update infoContact PDBjnumon