UZR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O5' | sing | 1.61Å | 1.59Å | |
| N1 | C2 | sing | 1.34Å | 1.37Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| N1 | C1' | sing | 1.46Å | 1.45Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| N3 | C4 | sing | 1.35Å | 1.32Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.31Å | |
| C4 | C5 | sing | 1.42Å | 1.38Å | |
| C5 | C6 | doub | 1.35Å | 1.36Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.55Å | 1.47Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C2' | N3' | sing | 1.47Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | O3' | sing | 1.43Å | 1.38Å | |
| C3' | C4' | sing | 1.54Å | 1.50Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| N3' | N4' | doub | 1.12Å | 1.24Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| N4' | N5' | doub | 1.12Å | 1.16Å | |
| C5' | O5' | sing | 1.43Å | 1.46Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| N5' | HN5' | sing | 0.97Å | 1.00Å | |
| P | OP1 | doub | 1.48Å | 1.50Å | |
| P | OP2 | sing | 1.61Å | 1.57Å | |
| P | OP3 | sing | 1.61Å | 1.72Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | O5' | C5' | 127.8° | 123.0° |
| O5' | P | OP1 | 109.5° | 109.5° |
| O5' | P | OP2 | 109.5° | 109.4° |
| O5' | P | OP3 | 109.5° | 109.5° |
| C2 | N1 | C6 | 119.3° | 120.6° |
| C2 | N1 | C1' | 118.4° | 119.7° |
| N1 | C2 | O2 | 119.3° | 119.5° |
| N1 | C2 | N3 | 116.6° | 121.0° |
| C6 | N1 | C1' | 122.0° | 119.7° |
| N1 | C6 | C5 | 121.7° | 119.7° |
| N1 | C6 | H6 | 119.2° | 120.2° |
| N1 | C1' | C2' | 115.8° | 110.6° |
| N1 | C1' | O4' | 109.3° | 110.7° |
| N1 | C1' | H1' | 104.7° | 110.5° |
| O2 | C2 | N3 | 123.7° | 119.5° |
| C2 | N3 | C4 | 124.9° | 120.2° |
| C2 | N3 | H3 | 117.6° | 119.9° |
| C4 | N3 | H3 | 117.6° | 119.9° |
| N3 | C4 | O4 | 119.1° | 120.3° |
| N3 | C4 | C5 | 117.9° | 119.4° |
| O4 | C4 | C5 | 123.0° | 120.3° |
| C4 | C5 | C6 | 119.5° | 119.1° |
| C4 | C5 | H5 | 120.2° | 120.4° |
| C6 | C5 | H5 | 120.2° | 120.5° |
| C5 | C6 | H6 | 119.1° | 120.1° |
| C2' | C1' | O4' | 108.3° | 103.5° |
| C2' | C1' | H1' | 105.9° | 110.6° |
| C1' | C2' | C3' | 101.7° | 102.1° |
| C1' | C2' | N3' | 110.8° | 110.9° |
| C1' | C2' | H2' | 112.5° | 110.9° |
| O4' | C1' | H1' | 112.9° | 110.7° |
| C1' | O4' | C4' | 107.6° | 107.0° |
| C3' | C2' | N3' | 106.0° | 110.9° |
| C3' | C2' | H2' | 116.8° | 110.9° |
| C2' | C3' | O3' | 118.6° | 110.5° |
| C2' | C3' | C4' | 100.9° | 104.2° |
| C2' | C3' | H3' | 110.1° | 110.5° |
| N3' | C2' | H2' | 108.6° | 110.8° |
| C2' | N3' | N4' | 115.6° | 120.0° |
| O3' | C3' | C4' | 111.5° | 110.5° |
| O3' | C3' | H3' | 99.3° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 117.4° | 110.6° |
| C3' | C4' | O4' | 104.1° | 107.3° |
| C3' | C4' | C5' | 104.9° | 109.9° |
| C3' | C4' | H4' | 116.4° | 109.8° |
| N3' | N4' | N5' | 174.7° | 180.0° |
| O4' | C4' | C5' | 111.6° | 109.9° |
| O4' | C4' | H4' | 110.2° | 109.8° |
| C5' | C4' | H4' | 109.5° | 110.0° |
| C4' | C5' | O5' | 125.7° | 109.5° |
| C4' | C5' | H5' | 104.4° | 109.5° |
| C4' | C5' | H5'' | 104.4° | 109.5° |
| N4' | N5' | HN5' | 112.0° | 120.0° |
| O5' | C5' | H5' | 104.4° | 109.5° |
| O5' | C5' | H5'' | 104.4° | 109.5° |
| H5' | C5' | H5'' | 114.0° | 109.4° |
| OP1 | P | OP2 | 109.5° | 109.5° |
| OP1 | P | OP3 | 109.5° | 109.5° |
| OP2 | P | OP3 | 109.5° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| P | O5' | C5' | C4' | 162.2° | 180.0° |
| P | O5' | C5' | H5' | 77.7° | 60.0° |
| P | O5' | C5' | H5'' | 42.3° | 59.9° |
| O5' | P | OP1 | OP2 | 120.0° | 120.0° |
| O5' | P | OP1 | OP3 | 120.0° | 120.0° |
| O5' | P | OP2 | OP3 | 120.0° | 120.0° |
| O5' | P | OP2 | HOP2 | 120.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 120.0° | 60.0° |
| C2 | N1 | C6 | C1' | 174.3° | 179.6° |
| N1 | C2 | O2 | N3 | 172.8° | 180.0° |
| N1 | C2 | N3 | C4 | 2.5° | 0.0° |
| N1 | C2 | N3 | H3 | 177.5° | 179.9° |
| C2 | N1 | C6 | C5 | 2.0° | 0.0° |
| C2 | N1 | C6 | H6 | 178.0° | 179.9° |
| C2 | N1 | C1' | C2' | 80.7° | 115.0° |
| C2 | N1 | C1' | O4' | 156.7° | 130.9° |
| C2 | N1 | C1' | H1' | 35.5° | 7.8° |
| C6 | N1 | C2 | O2 | 172.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.7° | 0.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | H5 | 179.8° | 180.0° |
| C6 | N1 | C1' | C2' | 104.9° | 65.3° |
| C6 | N1 | C1' | O4' | 17.7° | 48.8° |
| C6 | N1 | C1' | H1' | 138.9° | 171.8° |
| C1' | N1 | C2 | O2 | 12.8° | 0.3° |
| C1' | N1 | C2 | N3 | 173.8° | 179.7° |
| C1' | N1 | C6 | C5 | 172.3° | 179.7° |
| C1' | N1 | C6 | H6 | 7.7° | 0.3° |
| N1 | C1' | C2' | O4' | 123.2° | 118.6° |
| N1 | C1' | C2' | H1' | 115.5° | 122.8° |
| N1 | C1' | O4' | H1' | 116.1° | 122.9° |
| N1 | C1' | C2' | C3' | 95.4° | 155.6° |
| N1 | C1' | C2' | N3' | 152.2° | 86.2° |
| N1 | C1' | C2' | H2' | 30.4° | 37.3° |
| N1 | C1' | O4' | C4' | 123.2° | 158.5° |
| O2 | C2 | N3 | C4 | 175.5° | 180.0° |
| O2 | C2 | N3 | H3 | 4.5° | 0.0° |
| C2 | N3 | C4 | H3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 173.4° | 180.0° |
| C2 | N3 | C4 | C5 | 4.2° | 0.0° |
| N3 | C4 | O4 | C5 | 177.5° | 179.9° |
| N3 | C4 | C5 | C6 | 2.7° | 0.1° |
| N3 | C4 | C5 | H5 | 177.3° | 180.0° |
| H3 | N3 | C4 | O4 | 6.6° | 0.1° |
| H3 | N3 | C4 | C5 | 175.8° | 180.0° |
| O4 | C4 | C5 | C6 | 174.8° | 180.0° |
| O4 | C4 | C5 | H5 | 5.2° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 179.8° | 180.0° |
| H5 | C5 | C6 | H6 | 0.2° | 0.1° |
| C2' | C1' | O4' | H1' | 116.9° | 118.6° |
| C1' | C2' | C3' | N3' | 116.0° | 118.2° |
| C1' | C2' | C3' | H2' | 122.9° | 118.3° |
| C1' | C2' | N3' | H2' | 124.0° | 123.6° |
| C1' | C2' | C3' | O3' | 161.8° | 97.8° |
| C1' | C2' | C3' | C4' | 39.9° | 20.9° |
| C1' | C2' | C3' | H3' | 84.9° | 139.7° |
| C1' | C2' | N3' | N4' | 89.6° | 175.0° |
| C2' | C1' | O4' | C4' | 3.8° | 40.0° |
| O4' | C1' | C2' | C3' | 27.8° | 37.0° |
| O4' | C1' | C2' | N3' | 84.6° | 155.2° |
| O4' | C1' | C2' | H2' | 153.6° | 81.2° |
| C1' | O4' | C4' | C3' | 22.1° | 26.5° |
| C1' | O4' | C4' | C5' | 134.8° | 145.9° |
| C1' | O4' | C4' | H4' | 103.3° | 92.9° |
| H1' | C1' | C2' | C3' | 149.1° | 81.6° |
| H1' | C1' | C2' | N3' | 36.7° | 36.5° |
| H1' | C1' | C2' | H2' | 85.1° | 160.1° |
| H1' | C1' | O4' | C4' | 120.7° | 78.6° |
| C3' | C2' | N3' | H2' | 126.3° | 123.7° |
| C2' | C3' | O3' | C4' | 116.5° | 114.8° |
| C2' | C3' | O3' | H3' | 119.0° | 122.5° |
| C2' | C3' | C4' | H3' | 119.6° | 118.7° |
| C3' | C2' | N3' | N4' | 160.7° | 72.3° |
| C2' | C3' | O3' | HO3' | 180.0° | 180.0° |
| C2' | C3' | C4' | O4' | 38.4° | 2.0° |
| C2' | C3' | C4' | C5' | 155.8° | 121.4° |
| C2' | C3' | C4' | H4' | 83.1° | 117.4° |
| N3' | C2' | C3' | O3' | 45.9° | 20.4° |
| N3' | C2' | C3' | C4' | 76.1° | 139.1° |
| N3' | C2' | C3' | H3' | 159.1° | 102.1° |
| C2' | N3' | N4' | N5' | 177.5° | 60.4° |
| H2' | C2' | C3' | O3' | 75.3° | 143.9° |
| H2' | C2' | C3' | C4' | 162.7° | 97.4° |
| H2' | C2' | C3' | H3' | 38.0° | 21.4° |
| H2' | C2' | N3' | N4' | 34.4° | 51.4° |
| O3' | C3' | C4' | H3' | 113.5° | 122.6° |
| O3' | C3' | C4' | O4' | 165.2° | 120.7° |
| O3' | C3' | C4' | C5' | 77.4° | 119.9° |
| O3' | C3' | C4' | H4' | 43.8° | 1.3° |
| C4' | C3' | O3' | HO3' | 63.5° | 65.2° |
| C3' | C4' | O4' | C5' | 112.6° | 119.4° |
| C3' | C4' | O4' | H4' | 125.5° | 119.4° |
| C3' | C4' | C5' | H4' | 125.6° | 121.1° |
| C3' | C4' | C5' | O5' | 163.1° | 175.0° |
| C3' | C4' | C5' | H5' | 43.0° | 55.0° |
| C3' | C4' | C5' | H5'' | 76.9° | 65.0° |
| H3' | C3' | O3' | HO3' | 60.9° | 57.5° |
| H3' | C3' | C4' | O4' | 81.2° | 116.7° |
| H3' | C3' | C4' | C5' | 36.1° | 2.7° |
| H3' | C3' | C4' | H4' | 157.3° | 123.9° |
| N3' | N4' | N5' | HN5' | 0.0° | 29.6° |
| O4' | C4' | C5' | H4' | 122.3° | 121.1° |
| O4' | C4' | C5' | O5' | 84.8° | 67.2° |
| O4' | C4' | C5' | H5' | 155.2° | 172.8° |
| O4' | C4' | C5' | H5'' | 35.2° | 52.8° |
| C4' | C5' | O5' | H5' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'' | 113.3° | 120.0° |
| H4' | C4' | C5' | O5' | 37.5° | 53.9° |
| H4' | C4' | C5' | H5' | 82.5° | 66.1° |
| H4' | C4' | C5' | H5'' | 157.5° | 173.9° |
| O5' | C5' | H5' | H5'' | 113.3° | 120.0° |
| C5' | O5' | P | OP1 | 43.8° | 55.0° |
| C5' | O5' | P | OP2 | 163.8° | 175.0° |
| C5' | O5' | P | OP3 | 76.2° | 65.0° |
| OP1 | P | OP2 | OP3 | 120.0° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 120.0° | 60.0° |
| OP3 | P | OP2 | HOP2 | 120.0° | 60.0° |
