UWJ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP2	P	doub	1.48Å	1.47Å
P	OP1	sing	1.61Å	1.44Å
P	O5'	sing	1.61Å	1.65Å
C5'	O5'	sing	1.43Å	1.45Å
C5'	C4'	sing	1.53Å	1.54Å
C4'	O4'	sing	1.44Å	1.46Å
C4'	C3'	sing	1.55Å	1.54Å
O4'	C1'	sing	1.44Å	1.48Å
C7	C5	sing	1.51Å	1.46Å
C6	C5	doub	1.35Å	1.34Å
C6	N1	sing	1.37Å	1.37Å
C5	C4	sing	1.42Å	1.41Å
C3'	O3'	sing	1.43Å	1.41Å
C3'	C2'	sing	1.55Å	1.63Å
C1'	N1	sing	1.47Å	1.48Å
C1'	C2'	sing	1.54Å	1.50Å
O4	C4	doub	1.22Å	1.23Å
N1	C2	sing	1.34Å	1.39Å
C4	N3	sing	1.35Å	1.38Å
C2	N3	sing	1.35Å	1.35Å
C2	O2	doub	1.22Å	1.24Å
C2'	SE2	sing	1.96Å	1.86Å
SE2	CA'	sing	1.96Å	1.97Å
P	O1	sing	1.61Å	1.62Å
C6	H6	sing	1.08Å	1.08Å
OP1	H1	sing	0.97Å	0.95Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
CA'	HA'1	sing	1.09Å	1.10Å
CA'	HA'3	sing	1.09Å	1.10Å
CA'	HA'2	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C7	H72	sing	1.09Å	1.10Å
C7	H2	sing	1.09Å	1.10Å
C7	H71	sing	1.09Å	1.10Å
N3	H3	sing	0.97Å	1.00Å
O1	H4	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP2	P	OP1	123.7°	109.5°
OP2	P	O5'	102.2°	109.5°
OP2	P	O1	105.6°	109.5°
OP1	P	O5'	112.9°	109.5°
OP1	P	O1	107.8°	109.5°
P	OP1	H1	109.5°	114.0°
P	O5'	C5'	123.7°	123.0°
O5'	P	O1	102.4°	109.5°
O5'	C5'	C4'	110.6°	109.5°
O5'	C5'	H5'1	109.2°	109.6°
O5'	C5'	H5'2	109.2°	109.5°
C5'	C4'	O4'	104.4°	110.6°
C5'	C4'	C3'	115.1°	110.7°
C4'	C5'	H5'1	109.2°	109.4°
C4'	C5'	H5'2	109.2°	109.4°
C5'	C4'	H4'	109.9°	110.5°
O4'	C4'	C3'	106.4°	103.5°
C4'	O4'	C1'	106.7°	107.0°
O4'	C4'	H4'	111.0°	110.6°
C4'	C3'	O3'	105.1°	110.9°
C4'	C3'	C2'	103.5°	102.1°
C3'	C4'	H4'	109.8°	110.8°
C4'	C3'	H3'	111.0°	110.9°
O4'	C1'	N1	105.4°	109.9°
O4'	C1'	C2'	103.9°	107.3°
O4'	C1'	H1'	108.5°	109.8°
C7	C5	C6	122.6°	120.5°
C7	C5	C4	118.5°	120.5°
C5	C7	H72	109.5°	109.4°
C5	C7	H2	109.4°	109.5°
C5	C7	H71	109.5°	109.5°
C5	C6	N1	122.0°	119.7°
C6	C5	C4	118.8°	119.1°
C5	C6	H6	119.0°	120.1°
C6	N1	C1'	122.4°	119.7°
C6	N1	C2	120.2°	120.6°
N1	C6	H6	119.0°	120.2°
C5	C4	O4	126.0°	120.3°
C5	C4	N3	118.1°	119.4°
O3'	C3'	C2'	113.7°	110.9°
O3'	C3'	H3'	113.2°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
C3'	C2'	C1'	101.0°	104.2°
C3'	C2'	SE2	116.8°	110.5°
C2'	C3'	H3'	109.8°	111.0°
C3'	C2'	H2'	108.2°	110.5°
N1	C1'	C2'	121.9°	109.9°
C1'	N1	C2	116.9°	119.7°
N1	C1'	H1'	108.4°	109.9°
C1'	C2'	SE2	114.9°	110.5°
C1'	C2'	H2'	109.8°	110.6°
C2'	C1'	H1'	108.1°	110.0°
O4	C4	N3	115.9°	120.3°
N1	C2	N3	117.8°	121.0°
N1	C2	O2	121.8°	119.5°
C4	N3	C2	122.9°	120.2°
C4	N3	H3	118.6°	119.9°
N3	C2	O2	120.3°	119.5°
C2	N3	H3	118.6°	119.9°
C2'	SE2	CA'	92.7°	101.0°
SE2	C2'	H2'	105.9°	110.4°
SE2	CA'	HA'1	109.5°	109.4°
SE2	CA'	HA'3	109.5°	109.5°
SE2	CA'	HA'2	109.5°	109.5°
P	O1	H4	109.5°	114.0°
H5'1	C5'	H5'2	109.5°	109.5°
HA'1	CA'	HA'3	109.5°	109.5°
HA'1	CA'	HA'2	109.4°	109.5°
HA'3	CA'	HA'2	109.5°	109.5°
H72	C7	H2	109.5°	109.4°
H72	C7	H71	109.4°	109.5°
H2	C7	H71	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP2	P	OP1	O5'	123.9°	120.0°
OP2	P	OP1	O1	123.7°	120.0°
OP2	P	O5'	O1	109.3°	120.0°
OP2	P	O5'	C5'	52.7°	54.9°
OP2	P	OP1	H1	0.0°	60.0°
OP2	P	O1	H4	0.0°	180.0°
OP1	P	O5'	O1	115.7°	120.0°
OP1	P	O5'	C5'	172.3°	174.9°
OP1	P	O1	H4	134.0°	60.0°
P	O5'	C5'	C4'	167.4°	180.0°
O5'	P	OP1	H1	123.9°	180.0°
P	O5'	C5'	H5'1	72.4°	60.0°
P	O5'	C5'	H5'2	47.2°	60.1°
O5'	P	O1	H4	106.7°	60.0°
O5'	C5'	C4'	H5'1	120.2°	120.1°
O5'	C5'	C4'	H5'2	120.2°	119.9°
O5'	C5'	C4'	O4'	52.3°	66.4°
O5'	C5'	C4'	C3'	63.9°	179.4°
C5'	O5'	P	O1	56.6°	65.0°
O5'	C5'	H5'1	H5'2	119.5°	120.0°
O5'	C5'	C4'	H4'	171.5°	56.4°
C5'	C4'	O4'	C3'	122.1°	118.6°
C5'	C4'	O4'	H4'	118.4°	122.8°
C5'	C4'	C3'	H4'	124.6°	123.0°
C5'	C4'	O4'	C1'	149.4°	158.6°
C5'	C4'	C3'	O3'	123.6°	86.3°
C5'	C4'	C3'	C2'	116.9°	155.5°
C4'	C5'	H5'1	H5'2	119.5°	119.9°
C5'	C4'	C3'	H3'	0.9°	37.2°
O4'	C4'	C3'	H4'	120.3°	118.5°
O4'	C4'	C3'	O3'	121.3°	155.2°
O4'	C4'	C3'	C2'	1.8°	37.0°
C4'	O4'	C1'	N1	172.9°	145.9°
C4'	O4'	C1'	C2'	43.7°	26.5°
O4'	C4'	C5'	H5'1	172.5°	53.7°
O4'	C4'	C5'	H5'2	67.9°	173.6°
O4'	C4'	C3'	H3'	116.0°	81.3°
C4'	O4'	C1'	H1'	71.1°	93.1°
C3'	C4'	O4'	C1'	27.3°	40.0°
C4'	C3'	O3'	C2'	112.5°	112.7°
C4'	C3'	O3'	H3'	121.3°	123.5°
C4'	C3'	C2'	H3'	118.6°	118.2°
C4'	C3'	C2'	C1'	23.2°	20.9°
C4'	C3'	C2'	SE2	102.2°	139.6°
C3'	C4'	C5'	H5'1	56.3°	60.4°
C3'	C4'	C5'	H5'2	175.9°	59.5°
C4'	C3'	O3'	HO3'	180.0°	61.4°
C4'	C3'	C2'	H2'	138.5°	97.9°
O4'	C1'	N1	C6	46.4°	126.4°
O4'	C1'	C2'	C3'	39.8°	2.0°
O4'	C1'	N1	C2'	117.6°	117.8°
O4'	C1'	N1	H1'	116.0°	121.0°
O4'	C1'	C2'	H1'	115.1°	119.5°
O4'	C1'	N1	C2	125.4°	53.6°
O4'	C1'	C2'	SE2	86.8°	116.7°
C1'	O4'	C4'	H4'	92.2°	78.6°
O4'	C1'	C2'	H2'	153.9°	120.7°
C7	C5	C6	C4	175.3°	179.7°
C7	C5	C6	N1	179.1°	180.0°
C7	C5	C4	O4	2.7°	0.2°
C7	C5	C4	N3	178.5°	179.7°
C7	C5	C6	H6	0.9°	0.3°
C5	C7	H72	H2	120.0°	119.9°
C5	C7	H72	H71	120.0°	120.0°
C5	C7	H2	H71	120.0°	120.1°
C5	C6	N1	H6	180.0°	179.6°
C5	C6	N1	C1'	174.5°	179.9°
C6	C5	C4	O4	172.8°	179.9°
C5	C6	N1	C2	2.9°	0.1°
C6	C5	C4	N3	6.0°	0.5°
C6	C5	C7	H72	180.0°	90.0°
C6	C5	C7	H2	60.0°	150.1°
C6	C5	C7	H71	60.0°	30.0°
N1	C6	C5	C4	5.6°	0.3°
C6	N1	C1'	C2	171.8°	180.0°
C6	N1	C1'	C2'	71.2°	115.7°
C6	N1	C2	N3	0.5°	0.0°
C6	N1	C2	O2	177.3°	179.7°
C6	N1	C1'	H1'	162.4°	5.5°
C5	C4	O4	N3	178.8°	179.5°
C5	C4	N3	C2	3.8°	0.5°
C4	C5	C6	H6	174.4°	180.0°
C4	C5	C7	H72	4.7°	89.7°
C4	C5	C7	H2	115.3°	30.2°
C4	C5	C7	H71	124.7°	150.3°
C5	C4	N3	H3	176.1°	179.5°
O3'	C3'	C2'	H3'	127.9°	123.6°
O3'	C3'	C2'	C1'	90.3°	139.1°
O3'	C3'	C2'	SE2	144.3°	102.2°
O3'	C3'	C4'	H4'	1.0°	36.7°
O3'	C3'	C2'	H2'	25.0°	20.3°
C3'	C2'	C1'	N1	158.2°	121.4°
C3'	C2'	C1'	SE2	126.7°	118.7°
C3'	C2'	C1'	H2'	114.1°	118.7°
C3'	C2'	SE2	H2'	120.5°	122.5°
C3'	C2'	SE2	CA'	66.3°	61.4°
C2'	C3'	C4'	H4'	118.5°	81.5°
C2'	C3'	O3'	HO3'	67.5°	174.2°
C3'	C2'	C1'	H1'	75.3°	117.4°
N1	C1'	C2'	H1'	126.5°	121.1°
C1'	N1	C2	N3	172.5°	180.0°
C1'	N1	C2	O2	10.7°	0.3°
N1	C1'	C2'	SE2	31.6°	2.8°
C1'	N1	C6	H6	5.5°	0.3°
N1	C1'	C2'	H2'	87.7°	119.8°
C2'	C1'	N1	C2	116.9°	64.3°
C1'	C2'	SE2	H2'	121.4°	122.7°
C1'	C2'	SE2	CA'	175.6°	176.2°
C1'	C2'	C3'	H3'	141.8°	97.3°
O4	C4	N3	C2	175.1°	180.0°
O4	C4	N3	H3	4.9°	0.0°
N1	C2	N3	C4	1.1°	0.3°
N1	C2	N3	O2	176.8°	179.7°
C2	N1	C6	H6	177.1°	179.7°
C2	N1	C1'	H1'	9.4°	174.5°
N1	C2	N3	H3	178.8°	179.7°
C4	N3	C2	H3	180.0°	180.0°
C4	N3	C2	O2	177.9°	180.0°
O2	C2	N3	H3	2.0°	0.0°
SE2	C2'	C3'	H3'	16.4°	21.4°
C2'	SE2	CA'	HA'1	180.0°	180.0°
C2'	SE2	CA'	HA'3	60.0°	60.0°
C2'	SE2	CA'	HA'2	60.0°	60.0°
SE2	C2'	C1'	H1'	158.0°	123.9°
CA'	SE2	C2'	H2'	54.2°	61.1°
SE2	CA'	HA'1	HA'3	120.0°	120.0°
SE2	CA'	HA'1	HA'2	120.0°	120.0°
SE2	CA'	HA'3	HA'2	120.0°	120.0°
O1	P	OP1	H1	123.7°	60.0°
H5'1	C5'	C4'	H4'	68.3°	176.5°
H5'2	C5'	C4'	H4'	51.3°	63.6°
H4'	C4'	C3'	H3'	123.7°	160.2°
H3'	C3'	O3'	HO3'	58.7°	62.1°
H3'	C3'	C2'	H2'	102.9°	143.9°
H2'	C2'	C1'	H1'	38.8°	1.3°
HA'1	CA'	HA'3	HA'2	119.9°	120.0°
H72	C7	H2	H71	120.0°	120.0°

Release date:	2021-06-02
Definition date:	2020-06-02
Last modified:	2021-05-28
Release status:	REL
Processing site:	RCSB
Derived from:	6X5D