UVX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.60Å
OP3	P	sing	1.61Å	1.56Å
P	O5'	sing	1.61Å	1.55Å
P	OP2	sing	1.61Å	1.55Å
C1'	N1	sing	1.46Å	1.48Å
N1	C6	sing	1.37Å	1.36Å
N1	C2	sing	1.35Å	1.33Å
O2	C2	doub	1.22Å	1.24Å
C2	N3	sing	1.35Å	1.34Å
N3	C4	sing	1.35Å	1.31Å
C5	C4	sing	1.42Å	1.37Å
C4	O4	doub	1.22Å	1.26Å
C6	C5	doub	1.35Å	1.38Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
O4'	C1'	sing	1.44Å	1.44Å
C1'	C2'	sing	1.56Å	1.52Å
C1'	H1'	sing	1.09Å	1.10Å
C6'	C2'	sing	1.54Å	1.51Å
C3'	C2'	sing	1.57Å	1.49Å
C2'	H2'	sing	1.09Å	1.10Å
C4'	C3'	sing	1.57Å	1.47Å
C3'	O3'	sing	1.43Å	1.44Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.52Å
C8'	C4'	sing	1.56Å	1.54Å
C4'	O4'	sing	1.45Å	1.44Å
C5'	O5'	sing	1.43Å	1.41Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C8'	C6'	sing	1.54Å	1.52Å
C6'	C7'	doub	1.31Å	1.49Å
C7'	H7'	sing	1.08Å	1.08Å
C7'	H7'A	sing	1.08Å	1.08Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
N3	HN3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP3	108.1°	109.5°
OP1	P	O5'	110.6°	109.5°
OP1	P	OP2	115.1°	109.4°
OP3	P	O5'	104.6°	109.5°
OP3	P	OP2	109.8°	109.5°
P	OP3	HOP3	109.5°	114.0°
O5'	P	OP2	108.1°	109.5°
P	O5'	C5'	118.6°	123.0°
P	OP2	HOP2	109.5°	114.0°
C1'	N1	C6	122.6°	119.7°
C1'	N1	C2	117.4°	119.7°
N1	C1'	O4'	110.0°	110.2°
N1	C1'	C2'	113.9°	110.3°
N1	C1'	H1'	104.9°	110.2°
C6	N1	C2	119.9°	120.6°
N1	C6	C5	119.8°	119.7°
N1	C6	H6	120.1°	120.1°
N1	C2	O2	119.7°	119.5°
N1	C2	N3	120.1°	120.9°
O2	C2	N3	120.2°	119.6°
C2	N3	C4	122.2°	120.3°
C2	N3	HN3	118.9°	119.9°
N3	C4	C5	119.6°	119.4°
N3	C4	O4	118.8°	120.3°
C4	N3	HN3	118.9°	119.8°
C5	C4	O4	121.6°	120.3°
C4	C5	C6	118.3°	119.1°
C4	C5	H5	120.8°	120.5°
C6	C5	H5	120.8°	120.4°
C5	C6	H6	120.1°	120.2°
O4'	C1'	C2'	105.5°	105.5°
O4'	C1'	H1'	113.3°	110.3°
C1'	O4'	C4'	104.6°	107.7°
C2'	C1'	H1'	109.4°	110.3°
C1'	C2'	C6'	102.4°	103.7°
C1'	C2'	C3'	96.7°	98.9°
C1'	C2'	H2'	118.5°	116.6°
C6'	C2'	C3'	100.8°	101.5°
C6'	C2'	H2'	115.2°	116.5°
C2'	C6'	C8'	108.1°	103.5°
C2'	C6'	C7'	125.7°	127.8°
C3'	C2'	H2'	119.8°	116.9°
C2'	C3'	C4'	96.9°	94.3°
C2'	C3'	O3'	110.4°	112.4°
C2'	C3'	H3'	117.3°	112.3°
C4'	C3'	O3'	111.1°	112.3°
C4'	C3'	H3'	116.7°	112.4°
C3'	C4'	C5'	113.9°	116.0°
C3'	C4'	C8'	104.9°	100.4°
C3'	C4'	O4'	100.9°	101.3°
O3'	C3'	H3'	104.6°	112.0°
C3'	O3'	HO3'	109.5°	114.0°
C5'	C4'	C8'	115.7°	116.5°
C5'	C4'	O4'	112.9°	115.8°
C4'	C5'	O5'	107.5°	109.4°
C4'	C5'	H5'	110.1°	109.5°
C4'	C5'	H5'A	110.1°	109.5°
C8'	C4'	O4'	107.2°	104.6°
C4'	C8'	C6'	98.2°	104.8°
C4'	C8'	H8'	113.4°	110.4°
C4'	C8'	H8'A	113.4°	110.4°
O5'	C5'	H5'	110.1°	109.5°
O5'	C5'	H5'A	110.1°	109.4°
H5'	C5'	H5'A	108.8°	109.5°
C8'	C6'	C7'	126.1°	128.7°
C6'	C8'	H8'	113.4°	110.6°
C6'	C8'	H8'A	113.4°	110.0°
C6'	C7'	H7'	120.0°	120.0°
C6'	C7'	H7'A	120.0°	120.1°
H7'	C7'	H7'A	120.0°	120.0°
H8'	C8'	H8'A	105.3°	110.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP3	O5'	118.0°	120.0°
OP1	P	OP3	OP2	126.3°	120.0°
OP1	P	O5'	OP2	126.8°	120.0°
OP1	P	O5'	C5'	38.5°	55.0°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	60.0°
OP3	P	O5'	OP2	116.9°	120.1°
OP3	P	O5'	C5'	77.8°	175.0°
OP3	P	OP2	HOP2	122.2°	60.0°
P	O5'	C5'	C4'	158.3°	180.0°
P	O5'	C5'	H5'	38.3°	60.0°
P	O5'	C5'	H5'A	81.7°	60.0°
O5'	P	OP2	HOP2	124.2°	60.0°
O5'	P	OP3	HOP3	117.9°	180.0°
OP2	P	O5'	C5'	165.3°	65.0°
OP2	P	OP3	HOP3	126.3°	60.0°
C1'	N1	C6	C2	177.3°	179.7°
C1'	N1	C2	O2	1.5°	0.3°
C1'	N1	C2	N3	177.9°	179.7°
C1'	N1	C6	C5	178.7°	179.8°
C1'	N1	C6	H6	1.3°	0.3°
N1	C1'	O4'	C2'	123.3°	119.0°
N1	C1'	O4'	H1'	117.0°	121.9°
N1	C1'	C2'	H1'	117.0°	121.9°
N1	C1'	C2'	C6'	170.4°	169.0°
N1	C1'	C2'	C3'	86.9°	86.7°
N1	C1'	C2'	H2'	42.3°	39.5°
N1	C1'	O4'	C4'	123.3°	120.9°
C6	N1	C2	O2	179.0°	180.0°
C6	N1	C2	N3	0.5°	0.0°
N1	C6	C5	C4	1.3°	0.1°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	H5	178.7°	180.0°
C6	N1	C1'	O4'	20.1°	21.1°
C6	N1	C1'	C2'	98.1°	94.9°
C6	N1	C1'	H1'	142.4°	143.1°
N1	C2	O2	N3	179.5°	179.9°
N1	C2	N3	C4	0.5°	0.0°
C2	N1	C6	C5	1.3°	0.1°
C2	N1	C6	H6	178.7°	180.0°
C2	N1	C1'	O4'	157.2°	158.6°
C2	N1	C1'	C2'	84.5°	85.4°
C2	N1	C1'	H1'	35.0°	36.6°
N1	C2	N3	HN3	179.5°	180.0°
O2	C2	N3	C4	179.9°	180.0°
O2	C2	N3	HN3	0.1°	0.1°
C2	N3	C4	HN3	180.0°	180.0°
C2	N3	C4	C5	0.5°	0.1°
C2	N3	C4	O4	178.9°	179.9°
N3	C4	C5	O4	179.4°	180.0°
N3	C4	C5	C6	0.4°	0.1°
N3	C4	C5	H5	179.7°	180.0°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	H6	178.7°	180.0°
C5	C4	N3	HN3	179.5°	180.0°
O4	C4	C5	C6	179.8°	179.9°
O4	C4	C5	H5	0.3°	0.0°
O4	C4	N3	HN3	1.1°	0.0°
H5	C5	C6	H6	1.3°	0.0°
O4'	C1'	C2'	H1'	122.3°	119.1°
O4'	C1'	C2'	C6'	68.9°	72.0°
O4'	C1'	C2'	C3'	33.8°	32.2°
O4'	C1'	C2'	H2'	163.1°	158.5°
C1'	O4'	C4'	C3'	34.9°	35.7°
C1'	O4'	C4'	C5'	156.9°	162.1°
C1'	O4'	C4'	C8'	74.5°	68.4°
C1'	C2'	C6'	C3'	99.4°	102.2°
C1'	C2'	C6'	H2'	130.1°	129.6°
C1'	C2'	C3'	H2'	128.4°	126.1°
C1'	C2'	C3'	C4'	53.9°	50.2°
C1'	C2'	C3'	O3'	169.4°	166.5°
C1'	C2'	C3'	H3'	71.0°	66.1°
C2'	C1'	O4'	C4'	0.0°	1.9°
C1'	C2'	C6'	C8'	69.4°	66.1°
C1'	C2'	C6'	C7'	113.8°	114.5°
H1'	C1'	C2'	C6'	53.4°	47.1°
H1'	C1'	C2'	C3'	156.1°	151.3°
H1'	C1'	C2'	H2'	74.7°	82.4°
H1'	C1'	O4'	C4'	119.7°	117.2°
C6'	C2'	C3'	H2'	127.6°	127.9°
C6'	C2'	C3'	C4'	50.2°	55.8°
C6'	C2'	C3'	O3'	65.4°	60.5°
C6'	C2'	C3'	H3'	175.0°	172.1°
C2'	C6'	C8'	C4'	2.4°	1.2°
C2'	C6'	C8'	C7'	176.8°	179.4°
C2'	C6'	C7'	H7'	176.2°	0.1°
C2'	C6'	C7'	H7'A	3.8°	180.0°
C2'	C6'	C8'	H8'	117.6°	120.2°
C2'	C6'	C8'	H8'A	122.4°	117.5°
C2'	C3'	C4'	O3'	115.0°	116.3°
C2'	C3'	C4'	H3'	125.3°	116.3°
C2'	C3'	O3'	H3'	127.0°	127.6°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	C5'	177.8°	179.6°
C2'	C3'	C4'	C8'	54.7°	54.0°
C2'	C3'	C4'	O4'	56.6°	53.3°
C3'	C2'	C6'	C8'	30.0°	36.1°
C3'	C2'	C6'	C7'	146.8°	143.2°
H2'	C2'	C3'	C4'	177.8°	176.3°
H2'	C2'	C3'	O3'	62.2°	67.4°
H2'	C2'	C3'	H3'	57.4°	59.9°
H2'	C2'	C6'	C8'	160.5°	164.3°
H2'	C2'	C6'	C7'	16.3°	15.1°
C4'	C3'	O3'	H3'	126.7°	127.6°
C4'	C3'	O3'	HO3'	73.7°	166.3°
C3'	C4'	C5'	C8'	121.7°	117.9°
C3'	C4'	C5'	O4'	114.3°	118.6°
C3'	C4'	C8'	O4'	106.7°	104.7°
C3'	C4'	C5'	O5'	57.4°	175.0°
C3'	C4'	C5'	H5'	177.4°	55.0°
C3'	C4'	C5'	H5'A	62.6°	65.0°
C3'	C4'	C8'	C6'	35.3°	33.9°
C3'	C4'	C8'	H8'	84.7°	85.2°
C3'	C4'	C8'	H8'A	155.3°	152.4°
O3'	C3'	C4'	C5'	67.1°	64.1°
O3'	C3'	C4'	C8'	60.4°	62.3°
O3'	C3'	C4'	O4'	171.6°	169.6°
H3'	C3'	O3'	HO3'	53.0°	66.1°
H3'	C3'	C4'	C5'	52.6°	63.3°
H3'	C3'	C4'	C8'	179.9°	170.3°
H3'	C3'	C4'	O4'	68.7°	63.0°
C5'	C4'	C8'	O4'	127.0°	129.1°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	120.8°	120.0°
C5'	C4'	C8'	C6'	161.7°	160.1°
C5'	C4'	C8'	H8'	41.7°	41.0°
C5'	C4'	C8'	H8'A	78.3°	81.5°
C8'	C4'	C5'	O5'	179.1°	57.1°
C8'	C4'	C5'	H5'	60.9°	62.9°
C8'	C4'	C5'	H5'A	59.1°	177.1°
C4'	C8'	C6'	H8'	120.0°	119.0°
C4'	C8'	C6'	H8'A	120.0°	118.7°
C4'	C8'	C6'	C7'	179.2°	178.1°
C4'	C8'	H8'	H8'A	124.6°	122.4°
O4'	C4'	C5'	O5'	56.9°	66.4°
O4'	C4'	C5'	H5'	63.1°	173.6°
O4'	C4'	C5'	H5'A	176.9°	53.6°
O4'	C4'	C8'	C6'	71.4°	70.8°
O4'	C4'	C8'	H8'	168.6°	170.1°
O4'	C4'	C8'	H8'A	48.6°	47.7°
O5'	C5'	H5'	H5'A	120.8°	120.0°
C8'	C6'	C7'	H7'	0.0°	179.1°
C8'	C6'	C7'	H7'A	180.0°	0.8°
C6'	C8'	H8'	H8'A	124.5°	122.0°
C6'	C7'	H7'	H7'A	180.0°	179.9°
C7'	C6'	C8'	H8'	59.2°	59.1°
C7'	C6'	C8'	H8'A	60.8°	63.1°

Definition date:	2010-10-11
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3OZ3