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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	doub	1.21Å	1.27Å
C1	C1M	sing	1.51Å	1.27Å
C1	O2	sing	1.34Å	1.60Å
C1M	H1M1	sing	1.09Å	1.12Å
C1M	H1M2	sing	1.09Å	1.11Å
C1M	H1M3	sing	1.09Å	1.12Å
O2	P	sing	1.61Å	1.48Å
P	O1P	doub	1.48Å	1.44Å
P	O2P	sing	1.61Å	1.45Å
P	O3P	sing	1.61Å	1.58Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C1M	127.5°	119.9°
O1	C1	O2	113.2°	120.0°
C1M	C1	O2	113.1°	120.0°
C1	C1M	H1M1	127.5°	109.5°
C1	C1M	H1M2	105.9°	109.5°
C1	C1M	H1M3	105.9°	109.5°
C1	O2	P	97.5°	120.0°
H1M1	C1M	H1M2	105.9°	109.5°
H1M1	C1M	H1M3	105.9°	109.5°
H1M2	C1M	H1M3	103.5°	109.4°
O2	P	O1P	113.3°	109.4°
O2	P	O2P	102.6°	109.5°
O2	P	O3P	116.9°	109.5°
O1P	P	O2P	104.3°	109.4°
O1P	P	O3P	114.1°	109.5°
O2P	P	O3P	103.4°	109.5°
P	O2P	HOP2	102.6°	106.8°
P	O3P	HOP3	116.9°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C1M	O2	150.2°	179.9°
O1	C1	C1M	H1M1	180.0°	0.1°
O1	C1	C1M	H1M2	54.7°	120.0°
O1	C1	C1M	H1M3	54.8°	120.1°
O1	C1	O2	P	122.2°	0.1°
C1	C1M	H1M1	H1M2	125.3°	120.0°
C1	C1M	H1M1	H1M3	125.2°	120.0°
C1	C1M	H1M2	H1M3	111.2°	120.0°
C1M	C1	O2	P	83.2°	180.0°
O2	C1	C1M	H1M1	29.8°	180.0°
O2	C1	C1M	H1M2	155.0°	59.9°
O2	C1	C1M	H1M3	95.5°	60.0°
C1	O2	P	O1P	170.0°	60.0°
C1	O2	P	O2P	78.2°	179.9°
C1	O2	P	O3P	34.2°	60.0°
H1M1	C1M	H1M2	H1M3	111.2°	120.0°
O2	P	O1P	O2P	110.8°	120.0°
O2	P	O1P	O3P	137.1°	120.0°
O2	P	O2P	O3P	122.0°	120.0°
O2	P	O2P	HOP2	179.9°	180.0°
O2	P	O3P	HOP3	180.0°	60.0°
O1P	P	O2P	O3P	119.6°	120.1°
O1P	P	O2P	HOP2	61.5°	60.1°
O1P	P	O3P	HOP3	44.5°	180.0°
O2P	P	O3P	HOP3	68.2°	60.0°
O3P	P	O2P	HOP2	58.1°	60.0°

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PDB entries from 2024-07-31

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