UTP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PA	O1A	doub	1.48Å	1.49Å
PA	O2A	sing	1.61Å	1.49Å
PA	O3A	sing	1.61Å	1.62Å
PA	O5'	sing	1.61Å	1.58Å
O2A	H2A	sing	0.97Å	0.95Å
O3A	PB	sing	1.61Å	1.58Å
O5'	C5'	sing	1.43Å	1.42Å
PB	O1B	sing	1.61Å	1.45Å
PB	O2B	doub	1.48Å	1.44Å
PB	O3B	sing	1.61Å	1.59Å
O1B	H1B	sing	0.97Å	0.95Å
O3B	PG	sing	1.61Å	1.58Å
PG	O1G	sing	1.61Å	1.53Å
PG	O2G	doub	1.48Å	1.51Å
PG	O3G	sing	1.61Å	1.52Å
O1G	H1G	sing	0.97Å	0.95Å
O3G	H3G	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.50Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C3'	sing	1.54Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.41Å
C1'	C2'	sing	1.54Å	1.53Å
C1'	N1	sing	1.46Å	1.47Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	O2'	sing	1.43Å	1.41Å
C2'	C3'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HA	sing	0.97Å	0.95Å
C3'	O3'	sing	1.43Å	1.42Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HB	sing	0.97Å	0.95Å
N1	C6	sing	1.37Å	1.38Å	Aromatic
N1	C2	sing	1.35Å	1.39Å	Aromatic
C6	C5	doub	1.35Å	1.34Å	Aromatic
C6	H6	sing	1.08Å	1.08Å
C2	O2	doub	1.22Å	1.22Å
C2	N3	sing	1.35Å	1.38Å	Aromatic
N3	C4	sing	1.35Å	1.38Å	Aromatic
N3	H3	sing	0.97Å	1.00Å
C4	O4	doub	1.22Å	1.24Å
C4	C5	sing	1.42Å	1.44Å	Aromatic
C5	H5	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1A	PA	O2A	120.1°	109.5°
O1A	PA	O3A	110.2°	109.5°
O1A	PA	O5'	110.3°	109.5°
O2A	PA	O3A	108.0°	109.4°
O2A	PA	O5'	108.3°	109.5°
PA	O2A	H2A	109.5°	106.8°
O3A	PA	O5'	97.5°	109.5°
PA	O3A	PB	131.8°	106.8°
PA	O5'	C5'	120.0°	106.8°
O3A	PB	O1B	116.1°	109.5°
O3A	PB	O2B	104.7°	109.4°
O3A	PB	O3B	98.9°	109.5°
O5'	C5'	C4'	109.8°	109.4°
O5'	C5'	H5'1	109.3°	109.5°
O5'	C5'	H5'2	109.3°	109.5°
O1B	PB	O2B	118.3°	109.5°
O1B	PB	O3B	106.5°	109.5°
PB	O1B	H1B	109.5°	106.8°
O2B	PB	O3B	110.6°	109.5°
PB	O3B	PG	130.9°	106.8°
O3B	PG	O1G	107.1°	109.5°
O3B	PG	O2G	103.2°	109.5°
O3B	PG	O3G	109.0°	109.5°
O1G	PG	O2G	113.7°	109.4°
O1G	PG	O3G	111.3°	109.4°
PG	O1G	H1G	109.5°	106.8°
O2G	PG	O3G	112.2°	109.5°
PG	O3G	H3G	109.5°	106.9°
C4'	C5'	H5'1	109.3°	109.5°
C4'	C5'	H5'2	109.4°	109.5°
C5'	C4'	O4'	109.2°	110.4°
C5'	C4'	C3'	113.9°	110.7°
C5'	C4'	H4'	105.6°	110.4°
H5'1	C5'	H5'2	109.7°	109.5°
O4'	C4'	C3'	106.4°	104.7°
O4'	C4'	H4'	113.3°	110.3°
C4'	O4'	C1'	108.4°	105.4°
C3'	C4'	H4'	108.5°	110.3°
C4'	C3'	C2'	103.4°	104.2°
C4'	C3'	O3'	110.0°	110.5°
C4'	C3'	H3'	114.1°	110.5°
O4'	C1'	C2'	103.2°	104.8°
O4'	C1'	N1	109.0°	110.5°
O4'	C1'	H1'	115.4°	110.4°
C2'	C1'	N1	113.8°	110.3°
C2'	C1'	H1'	110.6°	110.4°
C1'	C2'	O2'	111.5°	110.6°
C1'	C2'	C3'	101.7°	104.0°
C1'	C2'	H2'	114.6°	110.6°
N1	C1'	H1'	105.1°	110.3°
C1'	N1	C6	121.5°	119.7°
C1'	N1	C2	117.7°	119.7°
O2'	C2'	C3'	113.3°	110.4°
O2'	C2'	H2'	103.3°	110.5°
C2'	O2'	HA	109.5°	106.8°
C3'	C2'	H2'	112.9°	110.5°
C2'	C3'	O3'	112.5°	110.5°
C2'	C3'	H3'	111.7°	110.5°
O3'	C3'	H3'	105.3°	110.5°
C3'	O3'	HB	109.5°	106.9°
C6	N1	C2	120.8°	120.6°
N1	C6	C5	122.7°	119.7°
N1	C6	H6	118.6°	120.1°
N1	C2	O2	122.7°	119.5°
N1	C2	N3	115.1°	121.0°
C5	C6	H6	118.7°	120.1°
C6	C5	C4	119.9°	119.1°
C6	C5	H5	120.0°	120.4°
O2	C2	N3	122.2°	119.5°
C2	N3	C4	126.9°	120.2°
C2	N3	H3	116.5°	119.9°
C4	N3	H3	116.5°	119.9°
N3	C4	O4	119.6°	120.3°
N3	C4	C5	114.5°	119.4°
O4	C4	C5	125.8°	120.3°
C4	C5	H5	120.1°	120.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1A	PA	O2A	O3A	127.4°	120.0°
O1A	PA	O2A	O5'	127.9°	120.0°
O1A	PA	O3A	O5'	114.9°	120.0°
O1A	PA	O2A	H2A	49.2°	180.0°
O1A	PA	O3A	PB	105.3°	45.0°
O1A	PA	O5'	C5'	179.7°	55.0°
O2A	PA	O3A	O5'	112.1°	120.0°
O2A	PA	O3A	PB	27.6°	75.0°
O2A	PA	O5'	C5'	46.4°	65.0°
O3A	PA	O2A	H2A	176.6°	60.0°
O3A	PA	O5'	C5'	65.4°	175.0°
PA	O3A	PB	O1B	12.7°	80.0°
PA	O3A	PB	O2B	119.7°	40.0°
PA	O3A	PB	O3B	126.1°	160.0°
O5'	PA	O2A	H2A	78.8°	60.0°
O5'	PA	O3A	PB	139.7°	165.0°
PA	O5'	C5'	C4'	154.0°	180.0°
PA	O5'	C5'	H5'1	86.2°	60.0°
PA	O5'	C5'	H5'2	34.0°	60.0°
O3A	PB	O1B	O2B	125.8°	120.0°
O3A	PB	O1B	O3B	109.0°	120.0°
O3A	PB	O2B	O3B	105.6°	120.0°
O3A	PB	O1B	H1B	19.8°	60.0°
O3A	PB	O3B	PG	177.3°	165.0°
O5'	C5'	C4'	H5'1	119.9°	120.0°
O5'	C5'	C4'	H5'2	120.0°	120.0°
O5'	C5'	H5'1	H5'2	119.9°	120.0°
O5'	C5'	C4'	O4'	71.4°	66.5°
O5'	C5'	C4'	C3'	169.8°	178.1°
O5'	C5'	C4'	H4'	50.8°	55.8°
O1B	PB	O2B	O3B	123.2°	120.0°
O1B	PB	O3B	PG	56.6°	75.0°
O2B	PB	O1B	H1B	106.0°	180.0°
O2B	PB	O3B	PG	73.2°	45.0°
O3B	PB	O1B	H1B	128.8°	60.0°
PB	O3B	PG	O1G	159.6°	80.0°
PB	O3B	PG	O2G	80.2°	40.0°
PB	O3B	PG	O3G	39.2°	160.0°
O3B	PG	O1G	O2G	113.2°	120.0°
O3B	PG	O1G	O3G	119.0°	120.0°
O3B	PG	O2G	O3G	117.1°	120.0°
O3B	PG	O1G	H1G	156.1°	60.0°
O3B	PG	O3G	H3G	20.6°	180.0°
O1G	PG	O2G	O3G	127.3°	119.9°
O1G	PG	O3G	H3G	97.2°	60.0°
O2G	PG	O1G	H1G	42.9°	180.0°
O2G	PG	O3G	H3G	134.2°	60.0°
O3G	PG	O1G	H1G	84.9°	60.0°
C4'	C5'	H5'1	H5'2	119.9°	120.0°
C5'	C4'	O4'	C3'	123.4°	119.1°
C5'	C4'	O4'	H4'	117.4°	122.2°
C5'	C4'	C3'	H4'	117.3°	122.4°
C5'	C4'	O4'	C1'	141.7°	159.5°
C5'	C4'	C3'	C2'	112.1°	142.7°
C5'	C4'	C3'	O3'	127.4°	98.5°
C5'	C4'	C3'	H3'	9.4°	24.1°
H5'1	C5'	C4'	O4'	168.8°	173.5°
H5'1	C5'	C4'	C3'	49.9°	58.1°
H5'1	C5'	C4'	H4'	69.1°	64.3°
H5'2	C5'	C4'	O4'	48.6°	53.5°
H5'2	C5'	C4'	C3'	70.2°	61.9°
H5'2	C5'	C4'	H4'	170.8°	175.7°
O4'	C4'	C3'	H4'	122.2°	118.7°
C4'	O4'	C1'	C2'	37.1°	40.5°
C4'	O4'	C1'	N1	158.4°	159.3°
C4'	O4'	C1'	H1'	83.7°	78.4°
O4'	C4'	C3'	C2'	8.3°	23.8°
O4'	C4'	C3'	O3'	112.1°	142.5°
O4'	C4'	C3'	H3'	129.8°	94.9°
C3'	C4'	O4'	C1'	18.2°	40.4°
C4'	C3'	C2'	C1'	29.1°	0.1°
C4'	C3'	C2'	O2'	148.9°	118.9°
C4'	C3'	C2'	O3'	118.7°	118.8°
C4'	C3'	C2'	H3'	123.1°	118.7°
C4'	C3'	C2'	H2'	94.2°	118.6°
C4'	C3'	O3'	H3'	123.4°	122.6°
C4'	C3'	O3'	HB	141.0°	178.1°
H4'	C4'	O4'	C1'	100.9°	78.3°
H4'	C4'	C3'	C2'	130.6°	94.9°
H4'	C4'	C3'	O3'	10.1°	23.9°
H4'	C4'	C3'	H3'	107.9°	146.5°
O4'	C1'	C2'	N1	117.9°	118.9°
O4'	C1'	C2'	H1'	124.0°	118.9°
O4'	C1'	N1	H1'	124.2°	122.3°
O4'	C1'	C2'	O2'	161.8°	142.7°
O4'	C1'	C2'	C3'	40.8°	24.0°
O4'	C1'	C2'	H2'	81.3°	94.6°
O4'	C1'	N1	C6	49.8°	129.6°
O4'	C1'	N1	C2	131.6°	50.2°
C2'	C1'	N1	H1'	121.2°	122.2°
C1'	C2'	O2'	C3'	114.0°	114.6°
C1'	C2'	O2'	H2'	123.6°	122.8°
C1'	C2'	C3'	H2'	123.3°	118.7°
C1'	C2'	O2'	HA	87.2°	176.1°
C1'	C2'	C3'	O3'	89.6°	118.6°
C1'	C2'	C3'	H3'	152.2°	118.8°
C2'	C1'	N1	C6	64.8°	115.0°
C2'	C1'	N1	C2	113.8°	65.2°
N1	C1'	C2'	O2'	80.2°	98.4°
N1	C1'	C2'	C3'	158.8°	143.0°
N1	C1'	C2'	H2'	36.7°	24.3°
C1'	N1	C6	C2	178.6°	179.8°
C1'	N1	C6	C5	176.6°	180.0°
C1'	N1	C6	H6	3.4°	0.0°
C1'	N1	C2	O2	4.4°	0.2°
C1'	N1	C2	N3	176.1°	179.8°
H1'	C1'	C2'	O2'	37.8°	23.7°
H1'	C1'	C2'	C3'	83.2°	94.9°
H1'	C1'	C2'	H2'	154.8°	146.5°
H1'	C1'	N1	C6	174.0°	7.3°
H1'	C1'	N1	C2	7.4°	172.5°
O2'	C2'	C3'	H2'	117.0°	122.6°
O2'	C2'	C3'	O3'	30.1°	0.1°
O2'	C2'	C3'	H3'	88.0°	122.5°
C3'	C2'	O2'	HA	158.8°	61.5°
C2'	C3'	O3'	H3'	121.8°	122.6°
C2'	C3'	O3'	HB	26.2°	63.3°
H2'	C2'	O2'	HA	36.3°	61.1°
H2'	C2'	C3'	O3'	147.1°	122.7°
H2'	C2'	C3'	H3'	28.9°	0.1°
H3'	C3'	O3'	HB	95.6°	59.3°
N1	C6	C5	H6	180.0°	180.0°
C6	N1	C2	O2	176.9°	180.0°
C6	N1	C2	N3	2.5°	0.4°
N1	C6	C5	C4	0.2°	0.0°
N1	C6	C5	H5	179.8°	180.0°
C2	N1	C6	C5	2.0°	0.2°
C2	N1	C6	H6	178.0°	179.8°
N1	C2	O2	N3	179.4°	179.6°
N1	C2	N3	C4	1.1°	0.4°
N1	C2	N3	H3	178.8°	179.8°
C6	C5	C4	N3	1.5°	0.0°
C6	C5	C4	O4	174.9°	180.0°
C6	C5	C4	H5	180.0°	180.0°
H6	C6	C5	C4	179.8°	180.0°
H6	C6	C5	H5	0.2°	0.0°
O2	C2	N3	C4	178.3°	180.0°
O2	C2	N3	H3	1.7°	0.1°
C2	N3	C4	H3	180.0°	179.9°
C2	N3	C4	O4	175.9°	179.8°
C2	N3	C4	C5	0.8°	0.2°
N3	C4	O4	C5	176.3°	180.0°
N3	C4	C5	H5	178.5°	180.0°
H3	N3	C4	O4	4.1°	0.1°
H3	N3	C4	C5	179.2°	179.9°
O4	C4	C5	H5	5.0°	0.0°

Definition date:	2002-03-27
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1GX6