USM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP2 | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| O5' | P | sing | 1.61Å | 1.61Å | |
| P | OP3 | sing | 1.61Å | 1.48Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C6 | N1 | sing | 1.37Å | 1.37Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| N1 | C1' | sing | 1.46Å | 1.55Å | |
| C5 | C6 | doub | 1.35Å | 1.34Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| N3 | C2 | sing | 1.35Å | 1.39Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C4 | N3 | sing | 1.35Å | 1.38Å | |
| C5 | C4 | sing | 1.42Å | 1.45Å | |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | S2' | sing | 1.81Å | 1.81Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| S2' | C2A | sing | 1.81Å | 1.79Å | |
| C2A | H2A | sing | 1.09Å | 1.10Å | |
| C2A | H2AA | sing | 1.09Å | 1.10Å | |
| C2A | H2AB | sing | 1.09Å | 1.10Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.45Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.46Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | OP1 | 108.3° | 109.4° |
| OP2 | P | O5' | 100.5° | 109.5° |
| OP2 | P | OP3 | 109.0° | 109.5° |
| OP1 | P | O5' | 109.7° | 109.5° |
| OP1 | P | OP3 | 119.3° | 109.5° |
| O5' | P | OP3 | 108.5° | 109.5° |
| P | O5' | C5' | 119.2° | 123.0° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| O5' | C5' | C4' | 111.9° | 109.5° |
| O5' | C5' | H5' | 108.7° | 109.5° |
| O5' | C5' | H5'A | 108.1° | 109.5° |
| C6 | N1 | C2 | 125.5° | 120.6° |
| C6 | N1 | C1' | 126.3° | 119.7° |
| N1 | C6 | C5 | 121.4° | 119.7° |
| N1 | C6 | H6 | 119.3° | 120.1° |
| C2 | N1 | C1' | 108.2° | 119.7° |
| N1 | C2 | N3 | 113.1° | 121.0° |
| N1 | C2 | O2 | 126.6° | 119.5° |
| N1 | C1' | C2' | 125.2° | 110.4° |
| N1 | C1' | O4' | 97.2° | 110.3° |
| N1 | C1' | H1' | 107.5° | 110.4° |
| C5 | C6 | H6 | 119.3° | 120.2° |
| C6 | C5 | C4 | 117.3° | 119.1° |
| C6 | C5 | H5 | 121.4° | 120.4° |
| N3 | C2 | O2 | 120.3° | 119.5° |
| C2 | N3 | C4 | 125.1° | 120.2° |
| C2 | N3 | HN3 | 117.5° | 119.9° |
| N3 | C4 | C5 | 117.6° | 119.4° |
| N3 | C4 | O4 | 118.8° | 120.3° |
| C4 | N3 | HN3 | 117.4° | 119.9° |
| C5 | C4 | O4 | 123.5° | 120.3° |
| C4 | C5 | H5 | 121.4° | 120.5° |
| C3' | C2' | C1' | 101.0° | 104.1° |
| C3' | C2' | S2' | 115.6° | 110.5° |
| C3' | C2' | H2' | 108.9° | 110.6° |
| C2' | C3' | C4' | 104.1° | 104.0° |
| C2' | C3' | O3' | 113.8° | 110.5° |
| C2' | C3' | H3' | 111.0° | 110.5° |
| C1' | C2' | S2' | 101.7° | 110.5° |
| C1' | C2' | H2' | 121.5° | 110.5° |
| C2' | C1' | O4' | 107.6° | 104.8° |
| C2' | C1' | H1' | 97.0° | 110.4° |
| S2' | C2' | H2' | 108.3° | 110.5° |
| C2' | S2' | C2A | 102.2° | 103.0° |
| S2' | C2A | H2A | 109.5° | 109.5° |
| S2' | C2A | H2AA | 109.5° | 109.5° |
| S2' | C2A | H2AB | 109.5° | 109.5° |
| H2A | C2A | H2AA | 109.4° | 109.4° |
| H2A | C2A | H2AB | 109.5° | 109.4° |
| H2AA | C2A | H2AB | 109.5° | 109.5° |
| C4' | C5' | H5' | 108.7° | 109.5° |
| C4' | C5' | H5'A | 108.1° | 109.5° |
| C5' | C4' | C3' | 114.2° | 110.4° |
| C5' | C4' | O4' | 111.5° | 110.4° |
| C5' | C4' | H4' | 103.2° | 110.3° |
| H5' | C5' | H5'A | 111.3° | 109.5° |
| C3' | C4' | O4' | 103.9° | 104.8° |
| C3' | C4' | H4' | 110.8° | 110.5° |
| C4' | C3' | O3' | 111.6° | 110.5° |
| C4' | C3' | H3' | 113.2° | 110.5° |
| O4' | C4' | H4' | 113.6° | 110.4° |
| C4' | O4' | C1' | 110.0° | 105.3° |
| O4' | C1' | H1' | 125.0° | 110.5° |
| O3' | C3' | H3' | 103.4° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP2 | P | OP1 | O5' | 108.8° | 120.0° |
| OP2 | P | OP1 | OP3 | 125.3° | 120.0° |
| OP2 | P | O5' | OP3 | 114.3° | 120.0° |
| OP2 | P | OP3 | HOP3 | 160.6° | 60.1° |
| OP2 | P | O5' | C5' | 78.3° | 175.0° |
| HOP2 | OP2 | P | OP1 | 123.9° | 60.0° |
| HOP2 | OP2 | P | O5' | 121.2° | 180.0° |
| HOP2 | OP2 | P | OP3 | 7.3° | 59.9° |
| OP1 | P | O5' | OP3 | 131.9° | 120.0° |
| OP1 | P | OP3 | HOP3 | 35.6° | 180.0° |
| OP1 | P | O5' | C5' | 35.5° | 55.0° |
| O5' | P | OP3 | HOP3 | 90.9° | 60.0° |
| P | O5' | C5' | C4' | 123.9° | 180.0° |
| P | O5' | C5' | H5' | 3.9° | 60.0° |
| P | O5' | C5' | H5'A | 117.1° | 60.0° |
| OP3 | P | O5' | C5' | 167.4° | 65.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'A | 119.0° | 120.0° |
| O5' | C5' | H5' | H5'A | 119.0° | 120.0° |
| O5' | C5' | C4' | C3' | 153.9° | 178.2° |
| O5' | C5' | C4' | O4' | 88.7° | 66.5° |
| O5' | C5' | C4' | H4' | 33.5° | 55.8° |
| C6 | N1 | C2 | C1' | 179.9° | 179.7° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.4° | 0.3° |
| C6 | N1 | C2 | O2 | 179.5° | 179.8° |
| N1 | C6 | C5 | C4 | 0.2° | 0.5° |
| N1 | C6 | C5 | H5 | 179.8° | 180.0° |
| C6 | N1 | C1' | C2' | 101.4° | 64.7° |
| C6 | N1 | C1' | O4' | 16.2° | 50.6° |
| C6 | N1 | C1' | H1' | 146.4° | 173.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.0° |
| C2 | N1 | C6 | H6 | 179.8° | 180.0° |
| N1 | C2 | N3 | O2 | 179.2° | 179.8° |
| N1 | C2 | N3 | C4 | 0.3° | 0.1° |
| C2 | N1 | C1' | C2' | 78.8° | 115.0° |
| C2 | N1 | C1' | O4' | 163.7° | 129.7° |
| C2 | N1 | C1' | H1' | 33.4° | 7.3° |
| N1 | C2 | N3 | HN3 | 179.6° | 180.0° |
| C1' | N1 | C6 | C5 | 179.7° | 179.7° |
| C1' | N1 | C6 | H6 | 0.3° | 0.3° |
| C1' | N1 | C2 | N3 | 179.5° | 180.0° |
| C1' | N1 | C2 | O2 | 0.3° | 0.1° |
| N1 | C1' | C2' | C3' | 86.1° | 142.8° |
| N1 | C1' | C2' | O4' | 112.7° | 118.8° |
| N1 | C1' | C2' | H1' | 117.1° | 122.3° |
| N1 | C1' | C2' | S2' | 154.6° | 98.6° |
| N1 | C1' | C2' | H2' | 34.4° | 24.0° |
| N1 | C1' | O4' | C4' | 123.9° | 159.3° |
| N1 | C1' | O4' | H1' | 117.3° | 122.3° |
| C6 | C5 | C4 | N3 | 0.2° | 0.7° |
| C6 | C5 | C4 | H5 | 180.0° | 179.5° |
| C6 | C5 | C4 | O4 | 179.8° | 179.8° |
| H6 | C6 | C5 | C4 | 179.9° | 179.5° |
| H6 | C6 | C5 | H5 | 0.2° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.8° |
| C2 | N3 | C4 | C5 | 0.1° | 0.3° |
| C2 | N3 | C4 | O4 | 179.6° | 179.9° |
| O2 | C2 | N3 | C4 | 179.5° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.4° | 0.2° |
| N3 | C4 | C5 | O4 | 179.6° | 179.6° |
| N3 | C4 | C5 | H5 | 179.8° | 179.9° |
| C5 | C4 | N3 | HN3 | 179.9° | 179.5° |
| O4 | C4 | C5 | H5 | 0.2° | 0.3° |
| O4 | C4 | N3 | HN3 | 0.5° | 0.1° |
| C3' | C2' | C1' | S2' | 119.3° | 118.7° |
| C3' | C2' | C1' | H2' | 120.5° | 118.8° |
| C3' | C2' | S2' | H2' | 122.5° | 122.8° |
| C3' | C2' | S2' | C2A | 174.4° | 70.3° |
| C2' | C3' | C4' | C5' | 154.5° | 142.8° |
| C2' | C3' | C4' | O3' | 123.2° | 118.6° |
| C2' | C3' | C4' | H3' | 120.6° | 118.6° |
| C2' | C3' | C4' | O4' | 32.9° | 24.0° |
| C2' | C3' | C4' | H4' | 89.5° | 94.9° |
| C3' | C2' | C1' | O4' | 26.6° | 24.0° |
| C3' | C2' | C1' | H1' | 156.8° | 94.9° |
| C2' | C3' | O3' | H3' | 120.5° | 122.7° |
| C2' | C3' | O3' | HO3' | 131.7° | 180.0° |
| C1' | C2' | S2' | H2' | 129.1° | 122.5° |
| C1' | C2' | S2' | C2A | 66.0° | 175.0° |
| C1' | C2' | C3' | C4' | 35.6° | 0.0° |
| C2' | C1' | O4' | C4' | 6.6° | 40.5° |
| C2' | C1' | O4' | H1' | 112.2° | 118.8° |
| C1' | C2' | C3' | O3' | 157.4° | 118.6° |
| C1' | C2' | C3' | H3' | 86.5° | 118.6° |
| C2' | S2' | C2A | H2A | 128.1° | 60.0° |
| C2' | S2' | C2A | H2AA | 8.1° | 180.0° |
| C2' | S2' | C2A | H2AB | 111.9° | 60.0° |
| S2' | C2' | C3' | C4' | 73.2° | 118.7° |
| S2' | C2' | C1' | O4' | 92.8° | 142.7° |
| S2' | C2' | C1' | H1' | 37.4° | 23.7° |
| S2' | C2' | C3' | O3' | 48.6° | 0.0° |
| S2' | C2' | C3' | H3' | 164.7° | 122.7° |
| H2' | C2' | S2' | C2A | 63.1° | 52.4° |
| H2' | C2' | C3' | C4' | 164.6° | 118.7° |
| H2' | C2' | C1' | O4' | 147.0° | 94.8° |
| H2' | C2' | C1' | H1' | 82.8° | 146.3° |
| H2' | C2' | C3' | O3' | 73.6° | 122.7° |
| H2' | C2' | C3' | H3' | 42.5° | 0.1° |
| S2' | C2A | H2A | H2AA | 120.0° | 120.0° |
| S2' | C2A | H2A | H2AB | 120.0° | 120.0° |
| S2' | C2A | H2AA | H2AB | 120.0° | 120.0° |
| H2A | C2A | H2AA | H2AB | 120.0° | 120.0° |
| C4' | C5' | H5' | H5'A | 119.0° | 120.0° |
| C5' | C4' | C3' | O4' | 121.7° | 118.8° |
| C5' | C4' | C3' | H4' | 116.0° | 122.3° |
| C5' | C4' | O4' | H4' | 116.0° | 122.2° |
| C5' | C4' | O4' | C1' | 139.6° | 159.4° |
| C5' | C4' | C3' | O3' | 82.2° | 98.6° |
| C5' | C4' | C3' | H3' | 33.9° | 24.2° |
| H5' | C5' | C4' | C3' | 86.1° | 61.9° |
| H5' | C5' | C4' | O4' | 31.3° | 53.5° |
| H5' | C5' | C4' | H4' | 153.5° | 175.7° |
| H5'A | C5' | C4' | C3' | 34.9° | 58.2° |
| H5'A | C5' | C4' | O4' | 152.3° | 173.6° |
| H5'A | C5' | C4' | H4' | 85.4° | 64.2° |
| C3' | C4' | O4' | H4' | 120.5° | 119.0° |
| C3' | C4' | O4' | C1' | 16.2° | 40.5° |
| C4' | C3' | O3' | H3' | 122.0° | 122.7° |
| C4' | C3' | O3' | HO3' | 110.8° | 65.4° |
| C4' | O4' | C1' | H1' | 118.8° | 78.3° |
| O4' | C4' | C3' | O3' | 156.1° | 142.6° |
| O4' | C4' | C3' | H3' | 87.8° | 94.6° |
| H4' | C4' | O4' | C1' | 104.3° | 78.4° |
| H4' | C4' | C3' | O3' | 33.8° | 23.8° |
| H4' | C4' | C3' | H3' | 149.9° | 146.5° |
| H3' | C3' | O3' | HO3' | 11.1° | 57.3° |
