USB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CD2 | CG | sing | 1.53Å | 1.52Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| CG | CB | sing | 1.53Å | 1.53Å | |
| CG | CD1 | sing | 1.53Å | 1.52Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| N3 | C2 | doub | 1.32Å | 1.34Å | Aromatic |
| N3 | C4 | sing | 1.33Å | 1.34Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.34Å | Aromatic |
| N | CA | sing | 1.47Å | 1.47Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| N9 | C4 | sing | 1.37Å | 1.37Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| C4 | C5 | doub | 1.41Å | 1.39Å | Aromatic |
| C | O | doub | 1.21Å | 1.20Å | |
| C | OPP | sing | 1.34Å | 1.34Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| OPP | P | sing | 1.61Å | 1.63Å | |
| N1 | C6 | doub | 1.33Å | 1.35Å | Aromatic |
| P | O1P | doub | 1.48Å | 1.48Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.41Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.34Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C8 | H2 | sing | 1.08Å | 1.08Å | |
| N | H3 | sing | 1.01Å | 1.00Å | |
| N | H4 | sing | 1.01Å | 1.00Å | |
| CA | H6 | sing | 1.09Å | 1.10Å | |
| CB | H7 | sing | 1.09Å | 1.10Å | |
| CB | H8 | sing | 1.09Å | 1.10Å | |
| CG | H9 | sing | 1.09Å | 1.10Å | |
| CD1 | H10 | sing | 1.09Å | 1.10Å | |
| CD1 | H11 | sing | 1.09Å | 1.10Å | |
| CD1 | H12 | sing | 1.09Å | 1.10Å | |
| CD2 | H13 | sing | 1.09Å | 1.10Å | |
| CD2 | H14 | sing | 1.09Å | 1.10Å | |
| CD2 | H15 | sing | 1.09Å | 1.10Å | |
| C1' | H16 | sing | 1.09Å | 1.10Å | |
| C2' | H17 | sing | 1.09Å | 1.10Å | |
| C3' | H18 | sing | 1.09Å | 1.10Å | |
| C4' | H19 | sing | 1.09Å | 1.10Å | |
| C5' | H20 | sing | 1.09Å | 1.10Å | |
| C5' | H21 | sing | 1.09Å | 1.10Å | |
| N6 | H22 | sing | 0.97Å | 1.00Å | |
| N6 | H23 | sing | 0.97Å | 1.00Å | |
| O2' | H24 | sing | 0.97Å | 0.95Å | |
| O2P | H25 | sing | 0.97Å | 0.95Å | |
| O3' | H26 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CD2 | CG | CB | 110.8° | 109.4° |
| CD2 | CG | CD1 | 110.4° | 109.4° |
| CD2 | CG | H9 | 107.9° | 109.5° |
| CG | CD2 | H13 | 109.5° | 109.5° |
| CG | CD2 | H14 | 109.5° | 109.5° |
| CG | CD2 | H15 | 109.5° | 109.5° |
| O3' | C3' | C4' | 111.9° | 110.6° |
| O3' | C3' | C2' | 109.6° | 110.5° |
| O3' | C3' | H18 | 111.7° | 110.4° |
| C3' | O3' | H26 | 109.5° | 114.1° |
| CB | CG | CD1 | 111.8° | 109.5° |
| CG | CB | CA | 115.5° | 109.5° |
| CG | CB | H7 | 107.9° | 109.4° |
| CG | CB | H8 | 108.0° | 109.5° |
| CB | CG | H9 | 107.8° | 109.5° |
| CD1 | CG | H9 | 107.9° | 109.5° |
| CG | CD1 | H10 | 109.5° | 109.5° |
| CG | CD1 | H11 | 109.5° | 109.5° |
| CG | CD1 | H12 | 109.5° | 109.5° |
| C3' | C4' | O4' | 106.4° | 107.2° |
| C3' | C4' | C5' | 114.8° | 109.9° |
| C4' | C3' | C2' | 103.1° | 104.2° |
| C4' | C3' | H18 | 110.1° | 110.5° |
| C3' | C4' | H19 | 108.1° | 109.9° |
| O4' | C4' | C5' | 109.8° | 109.9° |
| C4' | O4' | C1' | 109.0° | 107.0° |
| O4' | C4' | H19 | 109.2° | 109.9° |
| C4' | C5' | O5' | 108.2° | 109.5° |
| C5' | C4' | H19 | 108.4° | 110.0° |
| C4' | C5' | H20 | 109.8° | 109.4° |
| C4' | C5' | H21 | 109.8° | 109.5° |
| C3' | C2' | C1' | 100.8° | 102.1° |
| C3' | C2' | O2' | 111.6° | 111.0° |
| C3' | C2' | H17 | 111.1° | 110.9° |
| C2' | C3' | H18 | 110.2° | 110.5° |
| CB | CA | N | 109.7° | 109.5° |
| CB | CA | C | 108.8° | 109.5° |
| CB | CA | H6 | 107.6° | 109.5° |
| CA | CB | H7 | 108.0° | 109.5° |
| CA | CB | H8 | 107.9° | 109.5° |
| O4' | C1' | C2' | 105.5° | 103.5° |
| O4' | C1' | N9 | 109.6° | 110.6° |
| O4' | C1' | H16 | 110.0° | 110.8° |
| C5' | O5' | P | 121.6° | 123.0° |
| O5' | C5' | H20 | 109.8° | 109.5° |
| O5' | C5' | H21 | 109.8° | 109.5° |
| C2' | C1' | N9 | 113.7° | 110.7° |
| C1' | C2' | O2' | 108.8° | 110.9° |
| C2' | C1' | H16 | 108.5° | 110.6° |
| C1' | C2' | H17 | 111.1° | 110.9° |
| C1' | N9 | C4 | 126.3° | 126.2° |
| C1' | N9 | C8 | 127.7° | 126.3° |
| N9 | C1' | H16 | 109.4° | 110.6° |
| O2' | C2' | H17 | 112.7° | 110.8° |
| C2' | O2' | H24 | 109.5° | 114.0° |
| C2 | N3 | C4 | 111.1° | 120.7° |
| N3 | C2 | N1 | 128.9° | 122.5° |
| N3 | C2 | H1 | 115.5° | 118.8° |
| N3 | C4 | N9 | 127.6° | 134.9° |
| N3 | C4 | C5 | 126.6° | 119.1° |
| C2 | N1 | C6 | 118.8° | 121.2° |
| N1 | C2 | H1 | 115.6° | 118.8° |
| N | CA | C | 114.7° | 109.5° |
| CA | N | H3 | 109.5° | 111.0° |
| CA | N | H4 | 109.5° | 111.0° |
| N | CA | H6 | 108.3° | 109.5° |
| CA | C | O | 120.8° | 120.0° |
| CA | C | OPP | 120.4° | 120.0° |
| C | CA | H6 | 107.5° | 109.5° |
| C4 | N9 | C8 | 105.9° | 107.4° |
| N9 | C4 | C5 | 105.8° | 106.0° |
| N9 | C8 | N7 | 113.9° | 110.0° |
| N9 | C8 | H2 | 123.1° | 125.0° |
| C4 | C5 | C6 | 116.9° | 118.1° |
| C4 | C5 | N7 | 110.6° | 107.2° |
| O | C | OPP | 118.8° | 120.0° |
| C | OPP | P | 134.9° | 117.0° |
| O5' | P | OPP | 104.0° | 109.4° |
| O5' | P | O1P | 108.6° | 109.5° |
| O5' | P | O2P | 107.0° | 109.5° |
| OPP | P | O1P | 107.7° | 109.5° |
| OPP | P | O2P | 108.8° | 109.4° |
| N1 | C6 | C5 | 117.7° | 118.5° |
| N1 | C6 | N6 | 118.5° | 120.8° |
| O1P | P | O2P | 119.6° | 109.5° |
| P | O2P | H25 | 109.5° | 114.0° |
| C8 | N7 | C5 | 103.8° | 109.4° |
| N7 | C8 | H2 | 123.1° | 125.0° |
| C6 | C5 | N7 | 132.5° | 134.7° |
| C5 | C6 | N6 | 123.8° | 120.7° |
| C6 | N6 | H22 | 109.5° | 120.0° |
| C6 | N6 | H23 | 109.4° | 120.0° |
| H3 | N | H4 | 109.5° | 111.0° |
| H7 | CB | H8 | 109.5° | 109.4° |
| H10 | CD1 | H11 | 109.5° | 109.4° |
| H10 | CD1 | H12 | 109.5° | 109.4° |
| H11 | CD1 | H12 | 109.5° | 109.5° |
| H13 | CD2 | H14 | 109.4° | 109.4° |
| H13 | CD2 | H15 | 109.5° | 109.5° |
| H14 | CD2 | H15 | 109.5° | 109.5° |
| H20 | C5' | H21 | 109.4° | 109.4° |
| H22 | N6 | H23 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CD2 | CG | CB | CD1 | 123.7° | 119.9° |
| CD2 | CG | CB | H9 | 117.8° | 120.1° |
| CD2 | CG | CD1 | H9 | 117.7° | 120.0° |
| CD2 | CG | CB | CA | 169.6° | 65.1° |
| CD2 | CG | CB | H7 | 69.5° | 174.9° |
| CD2 | CG | CB | H8 | 48.7° | 55.0° |
| CD2 | CG | CD1 | H10 | 180.0° | 60.0° |
| CD2 | CG | CD1 | H11 | 60.0° | 60.0° |
| CD2 | CG | CD1 | H12 | 60.0° | 179.9° |
| CG | CD2 | H13 | H14 | 120.0° | 119.9° |
| CG | CD2 | H13 | H15 | 120.0° | 120.1° |
| CG | CD2 | H14 | H15 | 120.0° | 120.1° |
| O3' | C3' | C4' | C2' | 117.6° | 118.7° |
| O3' | C3' | C4' | H18 | 124.8° | 122.6° |
| O3' | C3' | C4' | O4' | 98.9° | 120.8° |
| O3' | C3' | C4' | C5' | 139.4° | 119.8° |
| O3' | C3' | C2' | H18 | 123.3° | 122.5° |
| O3' | C3' | C2' | C1' | 85.3° | 97.9° |
| O3' | C3' | C2' | O2' | 30.2° | 20.3° |
| O3' | C3' | C2' | H17 | 156.9° | 143.9° |
| O3' | C3' | C4' | H19 | 18.3° | 1.4° |
| CB | CG | CD1 | H9 | 118.4° | 120.0° |
| CG | CB | CA | H7 | 120.9° | 120.0° |
| CG | CB | CA | H8 | 120.9° | 120.0° |
| CG | CB | CA | N | 68.0° | 65.0° |
| CG | CB | CA | C | 165.8° | 175.0° |
| CG | CB | CA | H6 | 49.6° | 55.1° |
| CG | CB | H7 | H8 | 117.3° | 120.0° |
| CB | CG | CD1 | H10 | 56.1° | 60.0° |
| CB | CG | CD1 | H11 | 176.1° | 180.0° |
| CB | CG | CD1 | H12 | 63.9° | 60.0° |
| CB | CG | CD2 | H13 | 180.0° | 60.1° |
| CB | CG | CD2 | H14 | 60.0° | 180.0° |
| CB | CG | CD2 | H15 | 60.0° | 60.0° |
| CD1 | CG | CB | CA | 66.7° | 175.0° |
| CD1 | CG | CB | H7 | 54.2° | 55.0° |
| CD1 | CG | CB | H8 | 172.4° | 65.0° |
| CG | CD1 | H10 | H11 | 120.0° | 120.0° |
| CG | CD1 | H10 | H12 | 120.0° | 120.0° |
| CG | CD1 | H11 | H12 | 120.0° | 120.0° |
| CD1 | CG | CD2 | H13 | 55.5° | 180.0° |
| CD1 | CG | CD2 | H14 | 175.5° | 60.1° |
| CD1 | CG | CD2 | H15 | 64.5° | 60.0° |
| C3' | C4' | O4' | C5' | 124.9° | 119.4° |
| C3' | C4' | O4' | H19 | 116.4° | 119.4° |
| C3' | C4' | C5' | H19 | 121.0° | 121.1° |
| C4' | C3' | C2' | H18 | 117.4° | 118.7° |
| C3' | C4' | O4' | C1' | 5.8° | 26.5° |
| C3' | C4' | C5' | O5' | 60.2° | 175.0° |
| C4' | C3' | C2' | C1' | 34.0° | 20.9° |
| C4' | C3' | C2' | O2' | 149.4° | 139.1° |
| C4' | C3' | C2' | H17 | 83.8° | 97.3° |
| C3' | C4' | C5' | H20 | 179.9° | 55.0° |
| C3' | C4' | C5' | H21 | 59.6° | 64.9° |
| C4' | C3' | O3' | H26 | 180.0° | 176.3° |
| O4' | C4' | C5' | H19 | 119.2° | 121.1° |
| O4' | C4' | C3' | C2' | 18.8° | 2.0° |
| O4' | C4' | C5' | O5' | 59.6° | 67.2° |
| C4' | O4' | C1' | C2' | 28.3° | 40.1° |
| C4' | O4' | C1' | N9 | 151.2° | 158.6° |
| C4' | O4' | C1' | H16 | 88.5° | 78.5° |
| O4' | C4' | C3' | H18 | 136.3° | 116.7° |
| O4' | C4' | C5' | H20 | 60.2° | 172.8° |
| O4' | C4' | C5' | H21 | 179.4° | 52.9° |
| C5' | C4' | C3' | C2' | 102.9° | 121.4° |
| C5' | C4' | O4' | C1' | 130.6° | 146.0° |
| C4' | C5' | O5' | H20 | 119.8° | 120.0° |
| C4' | C5' | O5' | H21 | 119.8° | 120.0° |
| C4' | C5' | O5' | P | 168.5° | 180.0° |
| C5' | C4' | C3' | H18 | 14.6° | 2.7° |
| C4' | C5' | H20 | H21 | 120.6° | 119.9° |
| C3' | C2' | C1' | O4' | 38.9° | 37.0° |
| C3' | C2' | C1' | O2' | 117.5° | 118.3° |
| C3' | C2' | C1' | H17 | 117.8° | 118.2° |
| C3' | C2' | C1' | N9 | 159.1° | 155.5° |
| C3' | C2' | O2' | H17 | 125.8° | 123.7° |
| C3' | C2' | C1' | H16 | 79.0° | 81.6° |
| C2' | C3' | C4' | H19 | 135.9° | 117.4° |
| C3' | C2' | O2' | H24 | 180.0° | 67.3° |
| C2' | C3' | O3' | H26 | 66.3° | 61.5° |
| CB | CA | N | C | 122.8° | 120.0° |
| CB | CA | N | H6 | 117.1° | 120.0° |
| CB | CA | C | H6 | 116.2° | 120.0° |
| CB | CA | C | O | 53.9° | 100.0° |
| CB | CA | C | OPP | 126.7° | 80.0° |
| CB | CA | N | H3 | 180.0° | 176.1° |
| CB | CA | N | H4 | 60.0° | 60.0° |
| CA | CB | H7 | H8 | 117.3° | 120.0° |
| CA | CB | CG | H9 | 51.8° | 55.0° |
| O4' | C1' | C2' | N9 | 120.2° | 118.4° |
| O4' | C1' | C2' | H16 | 117.8° | 118.6° |
| O4' | C1' | N9 | H16 | 120.7° | 123.0° |
| O4' | C1' | C2' | O2' | 156.4° | 155.3° |
| O4' | C1' | N9 | C4 | 127.9° | 161.0° |
| O4' | C1' | N9 | C8 | 56.4° | 19.5° |
| O4' | C1' | C2' | H17 | 78.9° | 81.2° |
| C1' | O4' | C4' | H19 | 110.7° | 92.9° |
| C5' | O5' | P | OPP | 50.6° | 175.0° |
| C5' | O5' | P | O1P | 63.9° | 55.0° |
| C5' | O5' | P | O2P | 165.7° | 65.1° |
| O5' | C5' | C4' | H19 | 178.8° | 53.9° |
| O5' | C5' | H20 | H21 | 120.6° | 120.1° |
| C2' | C1' | N9 | H16 | 121.5° | 122.9° |
| C1' | C2' | O2' | H17 | 123.8° | 123.6° |
| C2' | C1' | N9 | C4 | 114.2° | 85.0° |
| C2' | C1' | N9 | C8 | 61.5° | 94.5° |
| C1' | C2' | C3' | H18 | 151.4° | 139.6° |
| C1' | C2' | O2' | H24 | 69.6° | 180.0° |
| N9 | C1' | C2' | O2' | 83.4° | 86.2° |
| C1' | N9 | C4 | N3 | 5.1° | 0.4° |
| C1' | N9 | C4 | C8 | 176.4° | 179.6° |
| C1' | N9 | C4 | C5 | 175.4° | 180.0° |
| C1' | N9 | C8 | N7 | 175.5° | 180.0° |
| C1' | N9 | C8 | H2 | 4.6° | 0.2° |
| N9 | C1' | C2' | H17 | 41.3° | 37.3° |
| O2' | C2' | C1' | H16 | 38.5° | 36.7° |
| O2' | C2' | C3' | H18 | 93.1° | 102.2° |
| N3 | C2 | N1 | H1 | 180.0° | 179.7° |
| C2 | N3 | C4 | N9 | 179.7° | 179.7° |
| C2 | N3 | C4 | C5 | 0.3° | 0.1° |
| N3 | C2 | N1 | C6 | 0.1° | 0.3° |
| C4 | N3 | C2 | N1 | 0.5° | 0.1° |
| N3 | C4 | N9 | C5 | 179.6° | 179.6° |
| N3 | C4 | N9 | C8 | 178.5° | 179.9° |
| N3 | C4 | C5 | C6 | 1.2° | 0.3° |
| N3 | C4 | C5 | N7 | 178.6° | 180.0° |
| C4 | N3 | C2 | H1 | 179.6° | 179.7° |
| C2 | N1 | C6 | C5 | 1.0° | 0.5° |
| C2 | N1 | C6 | N6 | 176.4° | 180.0° |
| N | CA | C | H6 | 120.5° | 120.0° |
| N | CA | C | O | 177.2° | 20.0° |
| N | CA | C | OPP | 3.4° | 160.0° |
| CA | N | H3 | H4 | 120.0° | 123.9° |
| N | CA | CB | H7 | 171.1° | 55.0° |
| N | CA | CB | H8 | 52.8° | 175.0° |
| CA | C | O | OPP | 179.4° | 180.0° |
| CA | C | OPP | P | 168.6° | 180.0° |
| C | CA | N | H3 | 57.3° | 64.0° |
| C | CA | N | H4 | 62.8° | 60.0° |
| C | CA | CB | H7 | 44.9° | 65.0° |
| C | CA | CB | H8 | 73.4° | 55.0° |
| C4 | N9 | C8 | N7 | 0.9° | 0.4° |
| N9 | C4 | C5 | C6 | 179.2° | 180.0° |
| N9 | C4 | C5 | N7 | 1.0° | 0.3° |
| C4 | N9 | C8 | H2 | 179.1° | 179.8° |
| C4 | N9 | C1' | H16 | 7.3° | 38.0° |
| C8 | N9 | C4 | C5 | 1.1° | 0.4° |
| N9 | C8 | N7 | H2 | 180.0° | 179.8° |
| N9 | C8 | N7 | C5 | 0.3° | 0.2° |
| C8 | N9 | C1' | H16 | 177.1° | 142.5° |
| C4 | C5 | C6 | N1 | 1.5° | 0.5° |
| C4 | C5 | N7 | C8 | 0.4° | 0.0° |
| C4 | C5 | C6 | N7 | 179.8° | 179.6° |
| C4 | C5 | C6 | N6 | 175.6° | 180.0° |
| O | C | OPP | P | 10.8° | 0.0° |
| O | C | CA | H6 | 62.3° | 140.0° |
| C | OPP | P | O5' | 62.7° | 175.0° |
| C | OPP | P | O1P | 177.8° | 55.0° |
| C | OPP | P | O2P | 51.1° | 65.1° |
| OPP | C | CA | H6 | 117.1° | 39.9° |
| O5' | P | OPP | O1P | 115.2° | 120.0° |
| O5' | P | OPP | O2P | 113.8° | 119.9° |
| O5' | P | O1P | O2P | 123.1° | 120.0° |
| P | O5' | C5' | H20 | 71.6° | 60.0° |
| P | O5' | C5' | H21 | 48.7° | 60.0° |
| O5' | P | O2P | H25 | 123.9° | 60.0° |
| OPP | P | O1P | O2P | 124.8° | 120.0° |
| OPP | P | O2P | H25 | 124.3° | 60.0° |
| N1 | C6 | C5 | N6 | 177.2° | 179.5° |
| N1 | C6 | C5 | N7 | 178.3° | 179.9° |
| C6 | N1 | C2 | H1 | 179.9° | 180.0° |
| N1 | C6 | N6 | H22 | 0.0° | 179.5° |
| N1 | C6 | N6 | H23 | 120.0° | 0.6° |
| O1P | P | O2P | H25 | 0.0° | 180.0° |
| C8 | N7 | C5 | C6 | 179.7° | 179.7° |
| C5 | C6 | N6 | H22 | 177.2° | 0.1° |
| C5 | C6 | N6 | H23 | 62.8° | 180.0° |
| N7 | C5 | C6 | N6 | 4.5° | 0.4° |
| C5 | N7 | C8 | H2 | 179.7° | 180.0° |
| C6 | N6 | H22 | H23 | 120.0° | 179.9° |
| H3 | N | CA | H6 | 62.8° | 56.1° |
| H4 | N | CA | H6 | 177.1° | 180.0° |
| H6 | CA | CB | H7 | 71.3° | 175.0° |
| H6 | CA | CB | H8 | 170.4° | 65.0° |
| H7 | CB | CG | H9 | 172.6° | 65.0° |
| H8 | CB | CG | H9 | 69.1° | 175.0° |
| H9 | CG | CD1 | H10 | 62.3° | 180.0° |
| H9 | CG | CD1 | H11 | 57.7° | 60.0° |
| H9 | CG | CD1 | H12 | 177.7° | 60.0° |
| H9 | CG | CD2 | H13 | 62.2° | 60.0° |
| H9 | CG | CD2 | H14 | 57.8° | 59.9° |
| H9 | CG | CD2 | H15 | 177.8° | 180.0° |
| H10 | CD1 | H11 | H12 | 120.0° | 119.9° |
| H13 | CD2 | H14 | H15 | 120.0° | 120.0° |
| H16 | C1' | C2' | H17 | 163.3° | 160.2° |
| H17 | C2' | C3' | H18 | 33.6° | 21.4° |
| H17 | C2' | O2' | H24 | 54.2° | 56.4° |
| H18 | C3' | C4' | H19 | 106.5° | 123.9° |
| H18 | C3' | O3' | H26 | 56.1° | 61.1° |
| H19 | C4' | C5' | H20 | 59.0° | 66.1° |
| H19 | C4' | C5' | H21 | 61.4° | 174.0° |
