US5

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	O5'	sing	1.61Å	1.60Å
P	O2P	sing	1.61Å	1.48Å
N1	C2	sing	1.35Å	1.38Å
C2	O2	doub	1.22Å	1.22Å
C2	N3	sing	1.34Å	1.38Å
C4	N3	doub	1.32Å	1.39Å
C4	SE4	sing	1.96Å	1.23Å
SE4	HSE4	sing	1.56Å	1.46Å
C5	C4	sing	1.40Å	1.45Å
C5	H5	sing	1.08Å	1.08Å
C6	N1	sing	1.36Å	1.39Å
C6	C5	doub	1.36Å	1.34Å
C6	H6	sing	1.08Å	1.08Å
C1'	N1	sing	1.46Å	1.51Å
C1'	H1'	sing	1.09Å	1.10Å
OP3	P	sing	1.61Å	1.48Å
OP3	HOP3	sing	0.97Å	0.95Å
C2'	C1'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	C2'	sing	1.43Å	1.42Å
O2'	HO2'	sing	0.97Å	0.95Å
O2P	HO2P	sing	0.97Å	0.95Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	C4'	sing	1.54Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	C3'	sing	1.43Å	1.42Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.42Å
C5'	C4'	sing	1.53Å	1.52Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
P	OP1	doub	1.48Å	1.47Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O5'	P	O2P	106.7°	109.4°
O5'	P	OP3	109.2°	109.5°
P	O5'	C5'	121.7°	123.0°
O5'	P	OP1	63.7°	109.5°
O2P	P	OP3	119.6°	109.4°
P	O2P	HO2P	109.5°	114.0°
O2P	P	OP1	43.6°	109.5°
N1	C2	O2	123.0°	119.5°
N1	C2	N3	115.1°	120.9°
C2	N1	C6	120.7°	120.1°
C2	N1	C1'	118.4°	119.9°
O2	C2	N3	121.8°	119.5°
C2	N3	C4	127.2°	120.8°
N3	C4	SE4	120.0°	120.1°
N3	C4	C5	114.5°	119.8°
C4	SE4	HSE4	109.5°	101.0°
SE4	C4	C5	125.5°	120.1°
C4	C5	H5	120.5°	120.4°
C4	C5	C6	119.1°	119.1°
H5	C5	C6	120.4°	120.5°
N1	C6	C5	123.4°	119.2°
N1	C6	H6	118.3°	120.4°
C6	N1	C1'	120.9°	120.0°
C5	C6	H6	118.3°	120.4°
N1	C1'	H1'	105.1°	110.5°
N1	C1'	C2'	112.0°	110.6°
N1	C1'	O4'	111.6°	110.6°
H1'	C1'	C2'	111.0°	110.6°
H1'	C1'	O4'	111.3°	110.6°
P	OP3	HOP3	109.5°	114.0°
OP3	P	OP1	127.8°	109.5°
C1'	C2'	H2'	115.4°	110.9°
C1'	C2'	O2'	111.4°	110.9°
C1'	C2'	C3'	100.3°	102.1°
C2'	C1'	O4'	105.9°	103.6°
H2'	C2'	O2'	103.3°	110.8°
H2'	C2'	C3'	113.8°	110.9°
C2'	O2'	HO2'	109.5°	114.0°
O2'	C2'	C3'	113.1°	110.9°
C2'	C3'	C4'	100.3°	104.2°
C2'	C3'	H3'	114.2°	110.5°
C2'	C3'	O3'	112.8°	110.5°
C4'	C3'	H3'	115.0°	110.5°
C4'	C3'	O3'	112.1°	110.5°
C3'	C4'	O4'	103.3°	107.4°
C3'	C4'	H4'	110.0°	109.9°
C3'	C4'	C5'	115.2°	109.9°
H3'	C3'	O3'	102.9°	110.6°
C3'	O3'	HO3'	109.5°	114.0°
O4'	C4'	H4'	115.4°	109.7°
C4'	O4'	C1'	109.7°	106.9°
O4'	C4'	C5'	109.8°	109.9°
H4'	C4'	C5'	103.5°	110.0°
C4'	C5'	O5'	110.0°	109.5°
C4'	C5'	H5'	109.3°	109.5°
C4'	C5'	H5'A	109.3°	109.5°
O5'	C5'	H5'	109.3°	109.4°
O5'	C5'	H5'A	109.3°	109.4°
H5'	C5'	H5'A	109.7°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	P	O2P	OP3	124.5°	120.0°
O5'	P	O2P	OP1	9.3°	120.1°
O5'	P	OP3	OP1	71.1°	120.1°
O5'	P	OP3	HOP3	71.1°	60.0°
O5'	P	O2P	HO2P	9.3°	180.0°
P	O5'	C5'	C4'	162.9°	180.0°
P	O5'	C5'	H5'	42.9°	59.9°
P	O5'	C5'	H5'A	77.1°	60.0°
O2P	P	OP3	OP1	52.2°	120.0°
O2P	P	OP3	HOP3	52.2°	60.0°
O2P	P	O5'	C5'	178.5°	175.0°
N1	C2	O2	N3	179.4°	180.0°
N1	C2	N3	C4	0.5°	0.0°
C2	N1	C6	C1'	178.7°	179.7°
C2	N1	C6	C5	0.6°	0.0°
C2	N1	C6	H6	179.5°	180.0°
C2	N1	C1'	H1'	41.3°	174.3°
C2	N1	C1'	C2'	79.3°	62.8°
C2	N1	C1'	O4'	162.1°	51.4°
O2	C2	N3	C4	180.0°	180.0°
O2	C2	N1	C6	179.8°	180.0°
O2	C2	N1	C1'	1.1°	0.3°
C2	N3	C4	SE4	179.9°	179.9°
C2	N3	C4	C5	0.0°	0.1°
N3	C2	N1	C6	0.8°	0.0°
N3	C2	N1	C1'	179.5°	179.7°
N3	C4	SE4	C5	179.9°	180.0°
N3	C4	SE4	HSE4	0.0°	0.0°
N3	C4	C5	H5	179.7°	180.0°
N3	C4	C5	C6	0.3°	0.1°
SE4	C4	C5	H5	0.4°	0.1°
SE4	C4	C5	C6	179.6°	179.9°
HSE4	SE4	C4	C5	179.9°	180.0°
C4	C5	H5	C6	180.0°	180.0°
C4	C5	C6	N1	0.0°	0.1°
C4	C5	C6	H6	180.0°	179.9°
H5	C5	C6	N1	180.0°	180.0°
H5	C5	C6	H6	0.0°	0.0°
N1	C6	C5	H6	180.0°	180.0°
C6	N1	C1'	H1'	140.0°	6.0°
C6	N1	C1'	C2'	99.4°	116.9°
C6	N1	C1'	O4'	19.2°	128.9°
C5	C6	N1	C1'	179.3°	179.7°
H6	C6	N1	C1'	0.8°	0.3°
N1	C1'	H1'	C2'	121.3°	122.9°
N1	C1'	H1'	O4'	121.0°	122.9°
N1	C1'	C2'	O4'	121.9°	118.6°
N1	C1'	C2'	H2'	33.2°	37.3°
N1	C1'	C2'	O2'	150.5°	86.2°
N1	C1'	C2'	C3'	89.6°	155.5°
N1	C1'	O4'	C4'	114.7°	158.4°
H1'	C1'	C2'	O4'	120.9°	118.6°
H1'	C1'	C2'	H2'	84.0°	160.1°
H1'	C1'	C2'	O2'	33.3°	36.6°
H1'	C1'	C2'	C3'	153.3°	81.6°
H1'	C1'	O4'	C4'	128.1°	78.8°
OP3	P	O2P	HO2P	115.2°	60.0°
OP3	P	O5'	C5'	47.9°	65.1°
HOP3	OP3	P	OP1	0.0°	180.0°
C1'	C2'	H2'	O2'	121.8°	123.6°
C1'	C2'	H2'	C3'	115.2°	112.8°
C1'	C2'	O2'	C3'	112.1°	112.8°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C1'	C2'	C3'	C4'	43.6°	20.9°
C1'	C2'	C3'	H3'	79.9°	139.5°
C1'	C2'	C3'	O3'	162.9°	97.8°
C2'	C1'	O4'	C4'	7.5°	39.8°
H2'	C2'	O2'	C3'	123.4°	123.6°
H2'	C2'	O2'	HO2'	55.5°	56.4°
H2'	C2'	C3'	C4'	167.4°	97.4°
H2'	C2'	C3'	H3'	43.9°	21.3°
H2'	C2'	C3'	O3'	73.2°	144.0°
H2'	C2'	C1'	O4'	155.1°	81.3°
O2'	C2'	C3'	C4'	75.1°	139.1°
O2'	C2'	C3'	H3'	161.3°	102.3°
O2'	C2'	C3'	O3'	44.2°	20.4°
O2'	C2'	C1'	O4'	87.6°	155.2°
HO2'	O2'	C2'	C3'	67.9°	67.2°
HO2P	O2P	P	OP1	0.0°	60.0°
C2'	C3'	C4'	H3'	123.0°	118.7°
C2'	C3'	C4'	O3'	119.9°	118.7°
C2'	C3'	H3'	O3'	122.7°	122.7°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	40.2°	1.9°
C2'	C3'	C4'	H4'	83.6°	117.4°
C3'	C2'	C1'	O4'	32.4°	37.0°
C2'	C3'	C4'	C5'	159.9°	121.5°
C4'	C3'	H3'	O3'	122.1°	122.6°
C4'	C3'	O3'	HO3'	67.7°	176.2°
C3'	C4'	O4'	H4'	120.1°	119.4°
C3'	C4'	O4'	C5'	123.4°	119.5°
C3'	C4'	H4'	C5'	123.6°	121.1°
C3'	C4'	O4'	C1'	20.8°	26.3°
C3'	C4'	C5'	O5'	55.1°	175.0°
C3'	C4'	C5'	H5'	175.1°	55.0°
C3'	C4'	C5'	H5'A	64.9°	65.0°
H3'	C3'	O3'	HO3'	56.4°	61.2°
H3'	C3'	C4'	O4'	82.8°	116.8°
H3'	C3'	C4'	H4'	153.4°	123.9°
H3'	C3'	C4'	C5'	36.9°	2.8°
O3'	C3'	C4'	O4'	160.1°	120.6°
O3'	C3'	C4'	H4'	36.4°	1.3°
O3'	C3'	C4'	C5'	80.2°	119.9°
O4'	C4'	H4'	C5'	120.0°	121.1°
O4'	C4'	C5'	O5'	61.0°	67.0°
O4'	C4'	C5'	H5'	59.0°	173.0°
O4'	C4'	C5'	H5'A	179.0°	53.0°
H4'	C4'	O4'	C1'	99.3°	93.1°
H4'	C4'	C5'	O5'	175.2°	53.9°
H4'	C4'	C5'	H5'	64.8°	66.1°
H4'	C4'	C5'	H5'A	55.3°	173.9°
C1'	O4'	C4'	C5'	144.2°	145.8°
C4'	C5'	O5'	H5'	120.0°	120.1°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	119.8°	120.0°
O5'	C5'	H5'	H5'A	119.8°	119.9°
C5'	O5'	P	OP1	171.3°	55.0°

Definition date:	2009-07-17
Last modified:	2021-03-01
Release status:	REL
Processing site:	RCSB
Derived from:	3HGA