US1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O3P	P	sing	1.61Å	1.62Å
O3P	HO3P	sing	0.97Å	0.95Å
P	O1P	sing	1.61Å	1.48Å
P	O2P	doub	1.48Å	1.48Å
P	O5'	sing	1.61Å	1.64Å
O1P	HO1P	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.46Å
C5'	C4'	sing	1.53Å	1.58Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C3'	sing	1.55Å	1.54Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.44Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	S	sing	1.81Å	1.70Å
C3'	H3'	sing	1.09Å	1.10Å
C2'	C1'	sing	1.54Å	1.48Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
C1'	N1	sing	1.46Å	1.46Å
C1'	H1'	sing	1.09Å	1.10Å
N1	C2	sing	1.35Å	1.40Å
N1	C6	sing	1.37Å	1.39Å
C2	O2	doub	1.22Å	1.25Å
C2	N3	sing	1.35Å	1.41Å
N3	C4	sing	1.35Å	1.42Å
N3	HN3	sing	0.97Å	1.00Å
C4	O4	doub	1.22Å	1.22Å
C4	C5	sing	1.42Å	1.43Å
C5	C6	doub	1.35Å	1.34Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
S	HS	sing	1.34Å	1.30Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	O3P	HO3P	109.5°	106.8°
O3P	P	O1P	109.2°	109.4°
O3P	P	O2P	110.2°	109.5°
O3P	P	O5'	104.9°	109.4°
O1P	P	O2P	118.4°	109.5°
O1P	P	O5'	105.3°	109.5°
P	O1P	HO1P	109.5°	106.8°
O2P	P	O5'	107.9°	109.5°
P	O5'	C5'	128.4°	106.8°
O5'	C5'	C4'	115.9°	109.5°
O5'	C5'	H5'1	107.4°	109.5°
O5'	C5'	H5'2	105.9°	109.5°
C4'	C5'	H5'1	107.4°	109.5°
C4'	C5'	H5'2	105.9°	109.5°
C5'	C4'	O4'	118.0°	110.6°
C5'	C4'	C3'	105.6°	110.6°
C5'	C4'	H4'	105.0°	110.6°
H5'1	C5'	H5'2	114.7°	109.5°
O4'	C4'	C3'	104.8°	103.6°
O4'	C4'	H4'	105.9°	110.6°
C4'	O4'	C1'	102.0°	106.9°
C3'	C4'	H4'	118.2°	110.6°
C4'	C3'	C2'	101.6°	102.0°
C4'	C3'	S	105.3°	111.2°
C4'	C3'	H3'	120.4°	110.8°
O4'	C1'	C2'	108.2°	107.3°
O4'	C1'	N1	127.7°	109.9°
O4'	C1'	H1'	101.8°	109.9°
C2'	C3'	S	118.5°	110.9°
C2'	C3'	H3'	107.7°	110.9°
C3'	C2'	C1'	90.7°	104.3°
C3'	C2'	H2'1	116.3°	110.4°
C3'	C2'	H2'2	119.8°	110.6°
S	C3'	H3'	104.2°	110.8°
C3'	S	HS	109.5°	100.0°
C1'	C2'	H2'1	116.3°	110.5°
C1'	C2'	H2'2	119.8°	110.5°
C2'	C1'	N1	120.4°	110.0°
C2'	C1'	H1'	118.9°	109.8°
H2'1	C2'	H2'2	96.0°	110.5°
N1	C1'	H1'	71.9°	109.9°
C1'	N1	C2	120.3°	119.7°
C1'	N1	C6	116.5°	119.7°
C2	N1	C6	123.2°	120.6°
N1	C2	O2	123.3°	119.5°
N1	C2	N3	112.7°	120.9°
N1	C6	C5	122.9°	119.7°
N1	C6	H6	118.6°	120.1°
O2	C2	N3	124.0°	119.6°
C2	N3	C4	126.4°	120.3°
C2	N3	HN3	116.8°	119.8°
C4	N3	HN3	116.8°	119.9°
N3	C4	O4	123.0°	120.3°
N3	C4	C5	115.6°	119.4°
O4	C4	C5	121.4°	120.3°
C4	C5	C6	119.3°	119.1°
C4	C5	H5	120.4°	120.5°
C6	C5	H5	120.4°	120.4°
C5	C6	H6	118.5°	120.2°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O3P	P	O1P	O2P	127.1°	120.0°
O3P	P	O1P	O5'	112.2°	119.9°
O3P	P	O2P	O5'	114.0°	120.0°
O3P	P	O1P	HO1P	117.6°	60.0°
O3P	P	O5'	C5'	52.2°	65.0°
HO3P	O3P	P	O1P	133.7°	60.0°
HO3P	O3P	P	O2P	2.0°	180.0°
HO3P	O3P	P	O5'	113.8°	60.0°
O1P	P	O2P	O5'	119.3°	120.0°
O1P	P	O5'	C5'	167.4°	175.0°
O2P	P	O1P	HO1P	9.6°	60.0°
O2P	P	O5'	C5'	65.3°	55.0°
O5'	P	O1P	HO1P	130.2°	180.0°
P	O5'	C5'	C4'	157.5°	180.0°
P	O5'	C5'	H5'1	82.5°	60.0°
P	O5'	C5'	H5'2	40.5°	60.0°
O5'	C5'	C4'	H5'1	120.0°	120.0°
O5'	C5'	C4'	H5'2	117.0°	120.0°
O5'	C5'	H5'1	H5'2	117.4°	120.0°
O5'	C5'	C4'	O4'	76.0°	68.6°
O5'	C5'	C4'	C3'	40.6°	177.2°
O5'	C5'	C4'	H4'	166.3°	54.3°
C4'	C5'	H5'1	H5'2	117.3°	120.0°
C5'	C4'	O4'	C3'	117.1°	118.6°
C5'	C4'	O4'	H4'	117.2°	122.8°
C5'	C4'	C3'	H4'	117.1°	122.9°
C5'	C4'	O4'	C1'	116.9°	158.5°
C5'	C4'	C3'	C2'	158.9°	155.4°
C5'	C4'	C3'	S	76.9°	86.3°
C5'	C4'	C3'	H3'	40.2°	37.3°
H5'1	C5'	C4'	O4'	164.0°	51.4°
H5'1	C5'	C4'	C3'	79.4°	62.8°
H5'1	C5'	C4'	H4'	46.3°	174.3°
H5'2	C5'	C4'	O4'	41.0°	171.4°
H5'2	C5'	C4'	C3'	157.6°	57.2°
H5'2	C5'	C4'	H4'	76.7°	65.7°
O4'	C4'	C3'	H4'	117.6°	118.6°
O4'	C4'	C3'	C2'	33.7°	36.9°
O4'	C4'	C3'	S	157.8°	155.1°
O4'	C4'	C3'	H3'	85.1°	81.2°
C4'	O4'	C1'	C2'	36.2°	26.5°
C4'	O4'	C1'	N1	121.6°	146.1°
C4'	O4'	C1'	H1'	162.2°	92.9°
C3'	C4'	O4'	C1'	0.2°	40.0°
C4'	C3'	C2'	S	114.7°	118.4°
C4'	C3'	C2'	H3'	127.5°	118.0°
C4'	C3'	S	H3'	127.6°	123.7°
C4'	C3'	C2'	C1'	50.1°	20.7°
C4'	C3'	C2'	H2'1	170.0°	98.0°
C4'	C3'	C2'	H2'2	75.3°	139.5°
C4'	C3'	S	HS	143.5°	174.2°
H4'	C4'	O4'	C1'	125.9°	78.6°
H4'	C4'	C3'	C2'	84.0°	81.7°
H4'	C4'	C3'	S	40.2°	36.5°
H4'	C4'	C3'	H3'	157.3°	160.2°
O4'	C1'	C2'	C3'	54.7°	2.1°
O4'	C1'	C2'	N1	159.8°	119.5°
O4'	C1'	C2'	H1'	115.2°	119.4°
O4'	C1'	C2'	H2'1	174.7°	120.7°
O4'	C1'	C2'	H2'2	70.7°	116.7°
O4'	C1'	N1	H1'	91.1°	121.0°
O4'	C1'	N1	C2	75.2°	53.3°
O4'	C1'	N1	C6	103.3°	126.4°
C2'	C3'	S	H3'	119.7°	123.6°
C3'	C2'	C1'	H2'1	120.0°	118.6°
C3'	C2'	C1'	H2'2	125.4°	118.8°
C3'	C2'	H2'1	H2'2	127.5°	122.6°
C3'	C2'	C1'	N1	105.1°	121.7°
C3'	C2'	C1'	H1'	169.9°	117.3°
C2'	C3'	S	HS	30.8°	61.4°
S	C3'	C2'	C1'	164.7°	139.1°
S	C3'	C2'	H2'1	75.3°	20.4°
S	C3'	C2'	H2'2	39.3°	102.1°
H3'	C3'	C2'	C1'	77.4°	97.3°
H3'	C3'	C2'	H2'1	42.5°	144.0°
H3'	C3'	C2'	H2'2	157.2°	21.4°
H3'	C3'	S	HS	88.9°	62.2°
C1'	C2'	H2'1	H2'2	127.5°	122.6°
C2'	C1'	N1	H1'	113.4°	121.0°
C2'	C1'	N1	C2	129.4°	64.6°
C2'	C1'	N1	C6	52.2°	115.6°
H2'1	C2'	C1'	N1	14.9°	119.7°
H2'1	C2'	C1'	H1'	70.1°	1.3°
H2'2	C2'	C1'	N1	129.5°	2.9°
H2'2	C2'	C1'	H1'	44.5°	123.9°
C1'	N1	C2	C6	178.3°	179.7°
C1'	N1	C2	O2	2.5°	0.3°
C1'	N1	C2	N3	178.4°	179.8°
C1'	N1	C6	C5	178.5°	180.0°
C1'	N1	C6	H6	1.5°	0.1°
H1'	C1'	N1	C2	16.0°	174.3°
H1'	C1'	N1	C6	165.6°	5.4°
N1	C2	O2	N3	179.1°	179.4°
N1	C2	N3	C4	0.1°	0.5°
N1	C2	N3	HN3	179.9°	179.7°
C2	N1	C6	C5	0.1°	0.3°
C2	N1	C6	H6	179.9°	179.8°
C6	N1	C2	O2	179.2°	180.0°
C6	N1	C2	N3	0.0°	0.5°
N1	C6	C5	C4	0.1°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	179.9°	180.0°
O2	C2	N3	C4	179.1°	180.0°
O2	C2	N3	HN3	0.9°	0.3°
C2	N3	C4	HN3	180.0°	179.7°
C2	N3	C4	O4	179.1°	179.7°
C2	N3	C4	C5	0.1°	0.3°
N3	C4	O4	C5	179.1°	180.0°
N3	C4	C5	C6	0.0°	0.0°
N3	C4	C5	H5	180.0°	180.0°
HN3	N3	C4	O4	0.9°	0.0°
HN3	N3	C4	C5	179.9°	180.0°
O4	C4	C5	C6	179.2°	180.0°
O4	C4	C5	H5	0.9°	0.1°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.9°	180.0°
H5	C5	C6	H6	0.0°	0.0°

Definition date:	2006-10-19
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	2KFN