URX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.58Å
OP3	P	sing	1.61Å	1.60Å
P	O5'	sing	1.61Å	1.54Å
P	OP2	sing	1.61Å	1.59Å
C1'	N1	sing	1.47Å	1.45Å
N1	C6	sing	1.37Å	1.35Å
N1	C2	sing	1.35Å	1.37Å
O2	C2	doub	1.22Å	1.30Å
C2	N3	sing	1.35Å	1.34Å
N3	C4	sing	1.35Å	1.33Å
C5	C4	sing	1.42Å	1.39Å
C4	O4	doub	1.22Å	1.25Å
C6	C5	doub	1.35Å	1.39Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
O4'	C1'	sing	1.44Å	1.44Å
C1'	C2'	sing	1.56Å	1.53Å
C1'	H1'	sing	1.09Å	1.10Å
C6'	C2'	sing	1.56Å	1.50Å
C3'	C2'	sing	1.57Å	1.45Å
C2'	H2'	sing	1.09Å	1.10Å
C4'	C3'	sing	1.57Å	1.49Å
O3'	C3'	sing	1.43Å	1.46Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.50Å
C8'	C4'	sing	1.56Å	1.50Å
C4'	O4'	sing	1.45Å	1.45Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C8'	C6'	sing	1.57Å	1.50Å
C7'	C6'	sing	1.53Å	1.48Å
C6'	H6'	sing	1.09Å	1.10Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C7'	H7'B	sing	1.09Å	1.10Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
N3	HN3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP3	98.0°	109.5°
OP1	P	O5'	108.0°	109.5°
OP1	P	OP2	112.0°	109.5°
OP3	P	O5'	110.9°	109.5°
OP3	P	OP2	118.0°	109.5°
P	OP3	HOP3	109.5°	114.0°
O5'	P	OP2	109.3°	109.5°
P	O5'	C5'	117.6°	123.0°
P	OP2	HOP2	109.5°	114.0°
C1'	N1	C6	120.8°	119.7°
C1'	N1	C2	119.7°	119.7°
N1	C1'	O4'	109.8°	110.2°
N1	C1'	C2'	111.8°	110.2°
N1	C1'	H1'	106.1°	110.2°
C6	N1	C2	119.5°	120.6°
N1	C6	C5	119.7°	119.7°
N1	C6	H6	120.1°	120.1°
N1	C2	O2	120.8°	119.6°
N1	C2	N3	120.9°	120.9°
O2	C2	N3	118.3°	119.5°
C2	N3	C4	121.1°	120.2°
C2	N3	HN3	119.4°	119.9°
N3	C4	C5	119.9°	119.4°
N3	C4	O4	118.9°	120.2°
C4	N3	HN3	119.4°	119.9°
C5	C4	O4	121.1°	120.4°
C4	C5	C6	118.7°	119.1°
C4	C5	H5	120.6°	120.5°
C6	C5	H5	120.7°	120.4°
C5	C6	H6	120.1°	120.2°
O4'	C1'	C2'	104.1°	105.5°
O4'	C1'	H1'	113.5°	110.3°
C1'	O4'	C4'	103.6°	107.9°
C2'	C1'	H1'	111.7°	110.2°
C1'	C2'	C6'	106.9°	103.6°
C1'	C2'	C3'	99.9°	98.8°
C1'	C2'	H2'	114.3°	116.7°
C6'	C2'	C3'	100.5°	101.3°
C6'	C2'	H2'	113.8°	116.6°
C2'	C6'	C8'	104.6°	102.9°
C2'	C6'	C7'	114.9°	110.6°
C2'	C6'	H6'	110.3°	110.6°
C3'	C2'	H2'	119.6°	117.0°
C2'	C3'	C4'	94.5°	94.6°
C2'	C3'	O3'	110.9°	112.3°
C2'	C3'	H3'	118.4°	112.3°
C4'	C3'	O3'	111.1°	112.4°
C4'	C3'	H3'	118.2°	112.3°
C3'	C4'	C5'	113.9°	115.9°
C3'	C4'	C8'	103.0°	100.8°
C3'	C4'	O4'	103.3°	101.4°
O3'	C3'	H3'	103.8°	111.9°
C3'	O3'	HO3'	109.5°	114.0°
C5'	C4'	C8'	116.0°	116.2°
C5'	C4'	O4'	112.4°	115.6°
C4'	C5'	O5'	107.7°	109.5°
C4'	C5'	H5'	110.0°	109.5°
C4'	C5'	H5'A	110.0°	109.5°
C8'	C4'	O4'	107.2°	104.8°
C4'	C8'	C6'	101.0°	104.6°
C4'	C8'	H8'	112.4°	110.5°
C4'	C8'	H8'A	112.4°	110.4°
O5'	C5'	H5'	110.1°	109.4°
O5'	C5'	H5'A	110.1°	109.5°
H5'	C5'	H5'A	108.9°	109.4°
C8'	C6'	C7'	112.6°	111.7°
C8'	C6'	H6'	112.7°	110.4°
C6'	C8'	H8'	112.4°	110.7°
C6'	C8'	H8'A	112.4°	110.0°
C7'	C6'	H6'	102.0°	110.5°
C6'	C7'	H7'	109.5°	109.4°
C6'	C7'	H7'A	109.5°	109.5°
C6'	C7'	H7'B	109.5°	109.5°
H7'	C7'	H7'A	109.5°	109.4°
H7'	C7'	H7'B	109.4°	109.5°
H7'A	C7'	H7'B	109.5°	109.5°
H8'	C8'	H8'A	106.4°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP3	O5'	112.8°	120.0°
OP1	P	OP3	OP2	120.2°	120.0°
OP1	P	O5'	OP2	122.1°	120.0°
OP1	P	O5'	C5'	51.1°	55.0°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	59.9°
OP3	P	O5'	OP2	131.7°	120.0°
OP3	P	O5'	C5'	55.1°	175.0°
OP3	P	OP2	HOP2	112.6°	60.0°
P	O5'	C5'	C4'	152.9°	180.0°
P	O5'	C5'	H5'	33.0°	60.0°
P	O5'	C5'	H5'A	87.1°	59.9°
O5'	P	OP2	HOP2	119.6°	60.0°
O5'	P	OP3	HOP3	112.8°	180.0°
OP2	P	O5'	C5'	173.2°	65.0°
OP2	P	OP3	HOP3	120.2°	60.0°
C1'	N1	C6	C2	176.7°	179.8°
C1'	N1	C2	O2	2.5°	0.2°
C1'	N1	C2	N3	176.0°	179.7°
C1'	N1	C6	C5	178.6°	179.7°
C1'	N1	C6	H6	1.4°	0.2°
N1	C1'	O4'	C2'	119.8°	119.0°
N1	C1'	O4'	H1'	118.6°	121.9°
N1	C1'	C2'	H1'	118.7°	121.9°
N1	C1'	C2'	C6'	173.1°	169.3°
N1	C1'	C2'	C3'	82.7°	86.7°
N1	C1'	C2'	H2'	46.3°	39.6°
N1	C1'	O4'	C4'	118.7°	120.5°
C6	N1	C2	O2	179.2°	180.0°
C6	N1	C2	N3	0.7°	0.1°
N1	C6	C5	C4	1.8°	0.0°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	H5	178.2°	180.0°
C6	N1	C1'	O4'	20.1°	18.7°
C6	N1	C1'	C2'	94.9°	97.4°
C6	N1	C1'	H1'	143.2°	140.7°
N1	C2	O2	N3	178.5°	179.9°
N1	C2	N3	C4	3.5°	0.0°
C2	N1	C6	C5	1.9°	0.1°
C2	N1	C6	H6	178.1°	180.0°
C2	N1	C1'	O4'	156.5°	161.1°
C2	N1	C1'	C2'	88.5°	82.9°
C2	N1	C1'	H1'	33.5°	39.1°
N1	C2	N3	HN3	176.4°	179.9°
O2	C2	N3	C4	177.9°	179.9°
O2	C2	N3	HN3	2.1°	0.0°
C2	N3	C4	HN3	180.0°	180.0°
C2	N3	C4	C5	3.6°	0.0°
C2	N3	C4	O4	179.4°	180.0°
N3	C4	C5	O4	177.0°	180.0°
N3	C4	C5	C6	0.9°	0.0°
N3	C4	C5	H5	179.1°	179.9°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	H6	178.2°	180.0°
C5	C4	N3	HN3	176.4°	180.0°
O4	C4	C5	C6	177.9°	180.0°
O4	C4	C5	H5	2.1°	0.1°
O4	C4	N3	HN3	0.7°	0.0°
H5	C5	C6	H6	1.8°	0.1°
O4'	C1'	C2'	H1'	122.8°	119.1°
O4'	C1'	C2'	C6'	68.4°	71.7°
O4'	C1'	C2'	C3'	35.8°	32.2°
O4'	C1'	C2'	H2'	164.8°	158.6°
C1'	O4'	C4'	C3'	33.5°	35.0°
C1'	O4'	C4'	C5'	156.6°	161.2°
C1'	O4'	C4'	C8'	74.9°	69.5°
C1'	C2'	C6'	C3'	103.8°	102.0°
C1'	C2'	C6'	H2'	127.1°	129.7°
C1'	C2'	C3'	H2'	125.4°	126.1°
C1'	C2'	C3'	C4'	53.4°	50.0°
C1'	C2'	C3'	O3'	168.1°	166.4°
C1'	C2'	C3'	H3'	72.1°	66.4°
C2'	C1'	O4'	C4'	1.1°	1.5°
C1'	C2'	C6'	C8'	66.3°	66.3°
C1'	C2'	C6'	C7'	57.6°	53.1°
C1'	C2'	C6'	H6'	172.2°	175.8°
H1'	C1'	C2'	C6'	54.4°	47.4°
H1'	C1'	C2'	C3'	158.6°	151.4°
H1'	C1'	C2'	H2'	72.4°	82.3°
H1'	C1'	O4'	C4'	122.7°	117.6°
C6'	C2'	C3'	H2'	125.2°	128.0°
C6'	C2'	C3'	C4'	56.0°	55.9°
C6'	C2'	C3'	O3'	58.7°	60.6°
C6'	C2'	C3'	H3'	178.5°	172.2°
C2'	C6'	C8'	C4'	2.2°	0.8°
C2'	C6'	C8'	C7'	125.4°	118.6°
C2'	C6'	C8'	H6'	119.9°	118.0°
C2'	C6'	C7'	H6'	119.3°	122.7°
C2'	C6'	C7'	H7'	180.0°	52.5°
C2'	C6'	C7'	H7'A	60.0°	172.4°
C2'	C6'	C7'	H7'B	60.0°	67.5°
C2'	C6'	C8'	H8'	122.2°	119.8°
C2'	C6'	C8'	H8'A	117.8°	117.8°
C2'	C3'	C4'	O3'	114.4°	116.4°
C2'	C3'	C4'	H3'	125.7°	116.4°
C2'	C3'	O3'	H3'	128.2°	127.4°
C2'	C3'	O3'	HO3'	180.0°	61.4°
C2'	C3'	C4'	C5'	177.4°	178.8°
C2'	C3'	C4'	C8'	56.2°	54.9°
C2'	C3'	C4'	O4'	55.3°	52.8°
C3'	C2'	C6'	C8'	37.5°	35.7°
C3'	C2'	C6'	C7'	161.4°	155.1°
C3'	C2'	C6'	H6'	84.0°	82.2°
H2'	C2'	C3'	C4'	178.8°	176.1°
H2'	C2'	C3'	O3'	66.5°	67.4°
H2'	C2'	C3'	H3'	53.3°	59.8°
H2'	C2'	C6'	C8'	166.6°	164.0°
H2'	C2'	C6'	C7'	69.5°	76.6°
H2'	C2'	C6'	H6'	45.1°	46.1°
C4'	C3'	O3'	H3'	128.1°	127.4°
C4'	C3'	O3'	HO3'	76.2°	166.6°
C3'	C4'	C5'	C8'	119.3°	118.1°
C3'	C4'	C5'	O4'	117.0°	118.4°
C3'	C4'	C8'	O4'	108.5°	105.0°
C3'	C4'	C5'	O5'	50.3°	175.0°
C3'	C4'	C5'	H5'	170.3°	55.0°
C3'	C4'	C5'	H5'A	69.7°	65.0°
C3'	C4'	C8'	C6'	33.1°	34.4°
C3'	C4'	C8'	H8'	86.8°	84.8°
C3'	C4'	C8'	H8'A	153.1°	152.7°
O3'	C3'	C4'	C5'	68.2°	64.8°
O3'	C3'	C4'	C8'	58.2°	61.5°
O3'	C3'	C4'	O4'	169.7°	169.2°
H3'	C3'	O3'	HO3'	51.8°	65.9°
H3'	C3'	C4'	C5'	51.6°	62.5°
H3'	C3'	C4'	C8'	178.0°	171.2°
H3'	C3'	C4'	O4'	70.5°	63.6°
C5'	C4'	C8'	O4'	126.4°	128.9°
C4'	C5'	O5'	H5'	120.0°	120.1°
C4'	C5'	O5'	H5'A	120.0°	120.1°
C4'	C5'	H5'	H5'A	120.7°	120.0°
C5'	C4'	C8'	C6'	158.2°	160.5°
C5'	C4'	C8'	H8'	38.2°	41.3°
C5'	C4'	C8'	H8'A	81.8°	81.2°
C8'	C4'	C5'	O5'	169.5°	56.9°
C8'	C4'	C5'	H5'	70.5°	63.1°
C8'	C4'	C5'	H5'A	49.5°	176.9°
C4'	C8'	C6'	H8'	120.0°	119.0°
C4'	C8'	C6'	H8'A	120.0°	118.6°
C4'	C8'	C6'	C7'	127.6°	119.4°
C4'	C8'	C6'	H6'	117.7°	117.2°
C4'	C8'	H8'	H8'A	123.5°	122.5°
O4'	C4'	C5'	O5'	66.7°	66.6°
O4'	C4'	C5'	H5'	53.3°	173.4°
O4'	C4'	C5'	H5'A	173.3°	53.5°
O4'	C4'	C8'	C6'	75.4°	70.6°
O4'	C4'	C8'	H8'	164.6°	170.3°
O4'	C4'	C8'	H8'A	44.6°	47.8°
O5'	C5'	H5'	H5'A	120.7°	119.9°
C8'	C6'	C7'	H6'	121.1°	123.4°
C8'	C6'	C7'	H7'	60.4°	166.4°
C8'	C6'	C7'	H7'A	59.6°	73.6°
C8'	C6'	C7'	H7'B	179.6°	46.4°
C6'	C8'	H8'	H8'A	123.4°	122.2°
C6'	C7'	H7'	H7'A	120.0°	120.0°
C6'	C7'	H7'	H7'B	120.0°	120.0°
C6'	C7'	H7'A	H7'B	120.0°	120.0°
C7'	C6'	C8'	H8'	112.4°	121.6°
C7'	C6'	C8'	H8'A	7.6°	0.8°
H6'	C6'	C7'	H7'	60.6°	70.2°
H6'	C6'	C7'	H7'A	179.3°	49.7°
H6'	C6'	C7'	H7'B	59.3°	169.8°
H6'	C6'	C8'	H8'	2.3°	1.8°
H6'	C6'	C8'	H8'A	122.3°	124.2°
H7'	C7'	H7'A	H7'B	120.0°	120.0°

Definition date:	2010-10-11
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3OZ4