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URU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C5'C4'sing1.53Å1.50Å
C5'O5'sing1.43Å1.44Å
OP1Pdoub1.48Å1.48Å
C4'O4'sing1.44Å1.46Å
C4'C3'sing1.55Å1.52Å
PO5'sing1.61Å1.60Å
POP2sing1.61Å1.49Å
O4'C1'sing1.44Å1.40Å
C6'C3'sing1.53Å1.53Å
C6'Csing1.51Å1.51Å
O2'C2'sing1.43Å1.44Å
C3'C2'sing1.55Å1.52Å
C1'C2'sing1.54Å1.54Å
C1'N1sing1.47Å1.47Å
NZ'Csing1.35Å1.40Å
NZ'CZ'sing1.47Å1.45Å
CO3doub1.21Å1.22Å
CZ'CY'sing1.53Å1.54Å
CY'OY'sing1.44Å1.47Å
CY'CX'sing1.54Å1.52Å
OY'CV'sing1.44Å1.41Å
N1C6sing1.37Å1.37Å
N1C2sing1.35Å1.37Å
C6C5doub1.35Å1.34Å
OW'CW'sing1.43Å1.40Å
CV'CW'sing1.55Å1.53Å
CV'N11sing1.46Å1.48Å
O2C2doub1.22Å1.21Å
C2N3sing1.35Å1.35Å
OX'CX'sing1.43Å1.41Å
CX'CW'sing1.55Å1.52Å
C5C4sing1.42Å1.43Å
N11C16sing1.37Å1.38Å
N11C12sing1.35Å1.38Å
C16C15doub1.35Å1.35Å
N3C4sing1.35Å1.37Å
C4O4doub1.22Å1.22Å
O12C12doub1.22Å1.24Å
C12N13sing1.35Å1.36Å
C15C14sing1.42Å1.42Å
N13C14sing1.35Å1.38Å
C14O14doub1.22Å1.23Å
C5'H2sing1.09Å1.10Å
C5'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C3'H5sing1.09Å1.10Å
C6'H6sing1.09Å1.10Å
C6'H7sing1.09Å1.10Å
C2'H8sing1.09Å1.10Å
O2'H9sing0.97Å0.95Å
C1'H10sing1.09Å1.10Å
C6H11sing1.08Å1.08Å
C5H12sing1.08Å1.08Å
N3H13sing0.97Å1.00Å
OP2H14sing0.97Å0.95Å
NZ'H15sing0.97Å1.00Å
CZ'H16sing1.09Å1.10Å
CZ'H17sing1.09Å1.10Å
CY'H18sing1.09Å1.10Å
CX'H19sing1.09Å1.10Å
OX'H20sing0.97Å0.95Å
CW'H21sing1.09Å1.10Å
OW'H22sing0.97Å0.95Å
CV'H23sing1.09Å1.10Å
C16H24sing1.08Å1.08Å
C15H25sing1.08Å1.08Å
N13H26sing0.97Å1.00Å
POP3sing1.61Å13.29Å
OP3H1sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4'C5'O5'108.9°109.5°
C5'C4'O4'108.6°110.6°
C5'C4'C3'117.7°110.6°
C4'C5'H2109.6°109.4°
C4'C5'H3109.6°109.5°
C5'C4'H4108.8°110.5°
C5'O5'P121.8°123.0°
O5'C5'H2109.6°109.5°
O5'C5'H3109.6°109.5°
OP1PO5'109.6°109.5°
OP1POP2120.4°109.4°
OP1POP364.5°109.5°
O4'C4'C3'103.5°103.5°
C4'O4'C1'110.3°107.0°
O4'C4'H4109.4°110.6°
C4'C3'C6'113.8°110.9°
C4'C3'C2'102.1°102.1°
C3'C4'H4108.6°110.8°
C4'C3'H5108.1°110.9°
O5'POP2105.7°109.4°
O5'POP356.4°109.5°
POP2H14109.5°114.0°
OP2POP3159.8°109.5°
O4'C1'C2'107.5°107.3°
O4'C1'N1110.3°109.9°
O4'C1'H10110.9°110.0°
C3'C6'C110.9°109.5°
C6'C3'C2'116.3°110.8°
C6'C3'H5108.0°110.8°
C3'C6'H6109.1°109.4°
C3'C6'H7109.1°109.5°
C6'CNZ'115.0°120.0°
C6'CO3124.5°120.0°
CC6'H6109.1°109.4°
CC6'H7109.1°109.5°
O2'C2'C3'108.7°110.5°
O2'C2'C1'112.2°110.5°
O2'C2'H8112.4°110.5°
C2'O2'H9109.5°114.0°
C3'C2'C1'101.1°104.2°
C2'C3'H5108.1°110.9°
C3'C2'H8111.1°110.5°
C2'C1'N1109.4°109.9°
C1'C2'H8110.9°110.5°
C2'C1'H10108.9°109.9°
C1'N1C6122.4°119.7°
C1'N1C2117.1°119.7°
N1C1'H10109.8°109.9°
CNZ'CZ'123.5°120.0°
NZ'CO3120.5°120.0°
CNZ'H15118.3°120.1°
NZ'CZ'CY'106.5°109.4°
CZ'NZ'H15118.2°120.0°
NZ'CZ'H16110.2°109.5°
NZ'CZ'H17110.2°109.5°
CZ'CY'OY'111.0°109.9°
CZ'CY'CX'110.9°109.9°
CY'CZ'H16110.2°109.5°
CY'CZ'H17110.2°109.4°
CZ'CY'H18110.2°109.9°
OY'CY'CX'103.0°107.3°
CY'OY'CV'111.0°107.0°
OY'CY'H18111.1°109.8°
CY'CX'OX'108.2°110.5°
CY'CX'CW'101.7°104.2°
CX'CY'H18110.4°110.0°
CY'CX'H19108.7°110.5°
OY'CV'CW'106.2°103.5°
OY'CV'N11108.9°110.6°
OY'CV'H23110.8°110.7°
C6N1C2120.5°120.6°
N1C6C5122.6°119.7°
N1C6H11118.7°120.2°
N1C2O2121.6°119.5°
N1C2N3115.6°120.9°
C6C5C4119.5°119.1°
C5C6H11118.7°120.1°
C6C5H12120.2°120.4°
OW'CW'CV'109.3°110.9°
OW'CW'CX'107.3°110.9°
OW'CW'H21113.5°110.8°
CW'OW'H22109.5°114.0°
CW'CV'N11112.1°110.7°
CV'CW'CX'103.2°102.1°
CV'CW'H21111.4°110.9°
CW'CV'H23109.1°110.6°
CV'N11C16122.6°119.7°
CV'N11C12115.8°119.7°
N11CV'H23109.8°110.6°
O2C2N3122.8°119.5°
C2N3C4128.0°120.3°
C2N3H13116.0°119.9°
OX'CX'CW'118.6°110.5°
OX'CX'H19110.2°110.5°
CX'OX'H20109.5°114.0°
CW'CX'H19108.7°110.5°
CX'CW'H21111.5°110.9°
C5C4N3113.9°119.4°
C5C4O4124.2°120.3°
C4C5H12120.3°120.4°
C16N11C12121.6°120.6°
N11C16C15120.6°119.6°
N11C16H24119.7°120.2°
N11C12O12122.6°119.5°
N11C12N13116.2°121.0°
C16C15C14120.6°119.2°
C15C16H24119.7°120.2°
C16C15H25119.7°120.4°
N3C4O4121.9°120.3°
C4N3H13116.0°119.8°
O12C12N13121.2°119.5°
C12N13C14125.8°120.2°
C12N13H26117.2°119.9°
C15C14N13115.3°119.4°
C15C14O14129.1°120.3°
C14C15H25119.7°120.5°
N13C14O14115.6°120.3°
C14N13H26117.1°119.9°
H2C5'H3109.5°109.5°
H6C6'H7109.5°109.5°
H16CZ'H17109.5°109.5°
POP3H190.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C4'C5'O5'H2119.9°120.0°
C4'C5'O5'H3119.9°120.0°
C5'C4'O4'C3'125.9°118.5°
C5'C4'O4'H4118.6°122.8°
C5'C4'C3'H4124.1°122.9°
C4'C5'O5'P177.9°180.0°
C5'C4'O4'C1'146.8°158.6°
C5'C4'C3'C6'77.5°86.3°
C5'C4'C3'C2'156.4°155.5°
C4'C5'H2H3120.2°120.0°
C5'C4'C3'H542.5°37.3°
C5'O5'POP146.4°54.9°
O5'C5'C4'O4'65.7°66.4°
O5'C5'C4'C3'51.4°179.5°
C5'O5'POP2177.7°65.0°
O5'C5'H2H3120.3°120.0°
O5'C5'C4'H4175.3°56.4°
C5'O5'POP38.2°175.0°
OP1PO5'OP2131.3°119.9°
OP1PO5'OP338.2°120.0°
OP1POP2OP398.7°120.0°
OP1POP2H140.0°180.0°
OP1POP3H190.0°60.0°
O4'C4'C3'H4116.2°118.6°
O4'C4'C3'C6'162.7°155.2°
O4'C4'C3'C2'36.6°37.0°
C4'O4'C1'C2'3.4°26.5°
C4'O4'C1'N1115.8°145.9°
O4'C4'C5'H254.2°53.6°
O4'C4'C5'H3174.4°173.6°
O4'C4'C3'H577.3°81.2°
C4'O4'C1'H10122.4°93.0°
C3'C4'O4'C1'20.9°40.0°
C4'C3'C6'C2'118.3°112.7°
C4'C3'C6'H5120.0°123.7°
C4'C3'C6'C177.7°175.0°
C4'C3'C2'O2'80.5°97.9°
C4'C3'C2'H5113.8°118.2°
C4'C3'C2'C1'37.6°20.9°
C3'C4'C5'H2171.3°60.5°
C3'C4'C5'H368.5°59.5°
C4'C3'C6'H662.1°55.0°
C4'C3'C6'H757.5°65.0°
C4'C3'C2'H8155.3°139.5°
O5'POP2OP326.1°120.0°
PO5'C5'H258.0°60.0°
PO5'C5'H362.3°60.0°
O5'POP2H14124.8°60.0°
O5'POP3H190.0°179.9°
OP2POP3H190.0°59.9°
O4'C1'C2'O2'89.4°120.7°
O4'C1'C2'C3'26.2°2.0°
O4'C1'C2'N1119.8°119.4°
O4'C1'C2'H10120.2°119.6°
O4'C1'N1H10122.4°121.1°
O4'C1'N1C618.2°127.2°
O4'C1'N1C2163.1°52.6°
C1'O4'C4'H494.6°78.6°
O4'C1'C2'H8144.1°116.6°
C3'C6'CH6120.2°119.9°
C3'C6'CH7120.2°120.1°
C6'C3'C2'O2'44.0°20.4°
C6'C3'C2'H5121.6°123.5°
C6'C3'C2'C1'162.1°139.1°
C3'C6'CNZ'158.2°180.0°
C3'C6'CO320.9°0.1°
C6'C3'C4'H446.6°36.6°
C3'C6'H6H7119.4°120.0°
C6'C3'C2'H880.1°102.2°
CC6'C3'C2'59.4°72.3°
C6'CNZ'O3179.1°179.9°
C6'CNZ'CZ'177.7°179.9°
CC6'C3'H562.3°51.3°
CC6'H6H7119.4°120.0°
C6'CNZ'H152.3°0.0°
O2'C2'C3'C1'118.2°118.7°
O2'C2'C3'H8124.1°122.6°
O2'C2'C1'H8126.5°122.6°
O2'C2'C1'N1150.8°119.8°
O2'C2'C3'H5165.6°143.9°
O2'C2'C1'H1030.8°1.2°
C3'C2'C1'H8117.9°118.7°
C3'C2'C1'N193.6°121.4°
C2'C3'C4'H479.6°81.6°
C2'C3'C6'H6179.6°167.8°
C2'C3'C6'H760.8°47.8°
C3'C2'O2'H9180.0°180.0°
C3'C2'C1'H10146.4°117.5°
C2'C1'N1H10119.5°121.0°
C2'C1'N1C699.9°115.0°
C2'C1'N1C278.9°65.2°
C1'C2'C3'H576.2°97.4°
C1'C2'O2'H969.1°65.2°
C1'N1C6C2178.7°179.8°
C1'N1C6C5179.3°180.0°
C1'N1C2O20.7°0.0°
C1'N1C2N3179.7°179.8°
N1C1'C2'H824.3°2.8°
C1'N1C6H110.7°0.0°
CNZ'CZ'H15180.0°180.0°
CNZ'CZ'CY'109.0°180.0°
NZ'CC6'H681.6°60.1°
NZ'CC6'H738.0°60.0°
CNZ'CZ'H1610.5°60.0°
CNZ'CZ'H17131.4°60.0°
CZ'NZ'CO33.1°0.0°
NZ'CZ'CY'H16119.5°120.0°
NZ'CZ'CY'H17119.5°120.0°
NZ'CZ'CY'OY'47.9°66.5°
NZ'CZ'CY'CX'161.7°175.7°
NZ'CZ'H16H17121.3°120.0°
NZ'CZ'CY'H1875.7°54.5°
O3CC6'H699.4°120.0°
O3CC6'H7141.1°120.0°
O3CNZ'H15176.9°179.9°
CZ'CY'OY'CX'118.8°119.4°
CZ'CY'OY'H18123.0°121.0°
CZ'CY'CX'H18122.5°121.1°
CZ'CY'OY'CV'142.2°145.9°
CZ'CY'CX'OX'79.0°119.9°
CZ'CY'CX'CW'155.3°121.4°
CY'CZ'NZ'H1571.0°0.0°
CY'CZ'H16H17121.4°120.0°
CZ'CY'CX'H1940.7°2.7°
OY'CY'CX'H18118.7°119.5°
CY'OY'CV'CW'0.1°40.0°
CY'OY'CV'N11120.9°158.6°
OY'CY'CX'OX'162.2°120.7°
OY'CY'CX'CW'36.5°2.0°
OY'CY'CZ'H1671.7°53.6°
OY'CY'CZ'H17167.4°173.6°
OY'CY'CX'H1978.1°116.7°
CY'OY'CV'H23118.2°78.5°
CX'CY'OY'CV'23.4°26.5°
CY'CX'CW'OW'78.8°139.1°
CY'CX'CW'CV'36.5°20.9°
CY'CX'OX'CW'115.0°114.8°
CY'CX'OX'H19118.8°122.5°
CY'CX'CW'H19114.6°118.7°
CX'CY'CZ'H1642.2°64.3°
CX'CY'CZ'H1778.7°55.8°
CY'CX'OX'H20180.0°180.0°
CY'CX'CW'H21156.2°97.3°
OY'CV'CW'OW'90.7°155.2°
OY'CV'CW'N11118.7°118.5°
OY'CV'CW'H23119.5°118.6°
OY'CV'N11H23121.5°123.0°
OY'CV'CW'CX'23.3°37.0°
OY'CV'N11C165.5°130.9°
OY'CV'N11C12171.6°48.9°
CV'OY'CY'H1894.8°93.1°
OY'CV'CW'H21143.1°81.2°
N1C6C5H11180.0°179.9°
C6N1C2O2179.4°179.7°
C6N1C2N30.9°0.5°
N1C6C5C40.1°0.1°
C6N1C1'H10140.7°6.0°
N1C6C5H12179.9°180.0°
C2N1C6C50.6°0.3°
N1C2O2N3179.6°179.8°
N1C2N3C40.7°0.5°
C2N1C1'H1040.6°173.7°
C2N1C6H11179.4°179.8°
N1C2N3H13179.3°179.8°
C6C5C4H12180.0°179.9°
C6C5C4N30.4°0.1°
C6C5C4O4179.9°180.0°
OW'CW'CV'CX'114.0°118.3°
OW'CW'CV'H21126.2°123.5°
OW'CW'CV'N11150.6°86.2°
OW'CW'CX'OX'39.6°20.4°
OW'CW'CX'H21124.9°123.6°
OW'CW'CX'H19166.6°102.2°
OW'CW'CV'H2328.8°36.6°
CW'CV'N11H23121.4°122.9°
CV'CW'CX'OX'155.0°97.8°
CV'CW'CX'H21119.7°118.2°
CW'CV'N11C16111.6°115.0°
CW'CV'N11C1271.2°65.2°
CV'CW'CX'H1978.1°139.6°
CV'CW'OW'H22180.0°174.2°
N11CV'CW'CX'95.4°155.5°
CV'N11C16C12177.0°179.8°
CV'N11C16C15176.7°180.0°
CV'N11C12O122.8°0.1°
CV'N11C12N13177.5°179.8°
N11CV'CW'H2124.4°37.3°
CV'N11C16H243.4°0.0°
O2C2N3C4179.7°179.7°
O2C2N3H130.3°0.0°
C2N3C4C50.0°0.3°
C2N3C4H13180.0°179.7°
C2N3C4O4179.5°179.8°
OX'CX'CW'H19126.9°122.6°
OX'CX'CY'H1843.5°1.3°
OX'CX'CW'H2185.3°144.0°
CW'CX'CY'H1882.2°117.4°
CW'CX'OX'H2065.0°65.2°
CX'CW'OW'H2268.8°61.5°
CX'CW'CV'H23142.8°81.6°
C5C4N3O4179.5°179.9°
C4C5C6H11179.9°180.0°
C5C4N3H13180.0°180.0°
N11C16C15H24180.0°179.9°
C16N11C12O12180.0°179.7°
C16N11C12N130.3°0.4°
N11C16C15C140.9°0.0°
C16N11CV'H23127.0°7.9°
N11C16C15H25179.1°179.9°
C12N11C16C150.4°0.2°
N11C12O12N13179.7°179.8°
N11C12N13C140.4°0.5°
C12N11CV'H2350.1°171.9°
C12N11C16H24179.6°179.8°
N11C12N13H26179.5°179.8°
C16C15C14H25180.0°179.9°
C16C15C14N130.8°0.0°
C16C15C14O14180.0°180.0°
N3C4C5H12179.6°180.0°
O4C4C5H120.1°0.1°
O4C4N3H130.5°0.1°
O12C12N13C14179.8°179.7°
O12C12N13H260.2°0.1°
C12N13C14C150.1°0.2°
C12N13C14H26180.0°179.8°
C12N13C14O14179.4°179.8°
C15C14N13O14179.3°180.0°
C14C15C16H24179.0°180.0°
C15C14N13H26179.9°180.0°
N13C14C15H25179.2°179.9°
O14C14C15H250.0°0.1°
O14C14N13H260.6°0.0°
H2C5'C4'H464.8°176.4°
H3C5'C4'H455.4°63.6°
H4C4'C3'H5166.6°160.3°
H5C3'C6'H658.0°68.7°
H5C3'C6'H7177.5°171.3°
H5C3'C2'H841.5°21.3°
H8C2'O2'H956.6°57.4°
H8C2'C1'H1095.8°123.8°
H11C6C5H120.1°0.1°
H14OP2POP398.8°60.0°
H15NZ'CZ'H16169.5°120.0°
H15NZ'CZ'H1748.6°120.0°
H16CZ'CY'H18164.8°174.6°
H17CZ'CY'H1843.8°65.4°
H18CY'CX'H19163.2°123.8°
H19CX'OX'H2061.2°57.4°
H19CX'CW'H2141.6°21.4°
H21CW'OW'H2254.9°62.2°
H21CW'CV'H2397.4°160.2°
H24C16C15H251.0°0.1°

222415

PDB entries from 2024-07-10

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