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URA

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.39Å
N1C6sing1.37Å1.38Å
N1HN1sing0.97Å1.02Å
C2O2doub1.22Å1.23Å
C2N3sing1.35Å1.38Å
N3C4sing1.35Å1.38Å
N3HN3sing0.97Å1.02Å
C4O4doub1.22Å1.22Å
C4C5sing1.41Å1.44Å
C5C6doub1.35Å1.35Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6121.8°120.6°
C2N1HN1107.8°119.7°
N1C2O2126.9°119.5°
N1C2N3113.2°121.0°
C6N1HN1107.8°119.6°
N1C6C5123.6°119.6°
N1C6H6119.6°120.2°
O2C2N3119.8°119.5°
C2N3C4128.3°120.2°
C2N3HN3115.7°119.9°
C4N3HN3116.0°119.9°
N3C4O4118.3°120.3°
N3C4C5114.9°119.4°
O4C4C5126.5°120.3°
C4C5C6118.0°119.1°
C4C5H5124.4°120.5°
C6C5H5117.6°120.4°
C5C6H6116.8°120.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6HN1125.3°180.0°
N1C2O2N3177.2°179.8°
N1C2N3C43.6°0.4°
N1C2N3HN3176.4°179.9°
C2N1C6C52.9°0.0°
C2N1C6H6177.1°180.0°
C6N1C2O2179.7°180.0°
C6N1C2N33.0°0.2°
N1C6C5C42.5°0.0°
N1C6C5H6180.0°180.0°
N1C6C5H5177.5°180.0°
HN1N1C2O255.1°0.0°
HN1N1C2N3122.2°179.8°
HN1N1C6C5122.4°180.0°
HN1N1C6H657.6°0.0°
O2C2N3C4178.9°179.8°
O2C2N3HN31.2°0.2°
C2N3C4HN3180.0°179.6°
C2N3C4O4170.0°179.8°
C2N3C4C53.5°0.4°
N3C4O4C5172.6°179.8°
N3C4C5C62.6°0.2°
N3C4C5H5177.4°179.8°
HN3N3C4O410.0°0.2°
HN3N3C4C5176.5°180.0°
O4C4C5C6170.2°180.0°
O4C4C5H59.7°0.0°
C4C5C6H5180.0°180.0°
C4C5C6H6177.5°180.0°
H5C5C6H62.5°0.0°

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PDB entries from 2024-04-17

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