UR3
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | OP3 | sing | 1.61Å | 181.80Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C6 | sing | 1.37Å | 1.37Å | |
| N1 | C2 | sing | 1.35Å | 1.38Å | |
| C6 | C5 | doub | 1.35Å | 1.33Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | C3U | sing | 1.46Å | 1.49Å | |
| N3 | C4 | sing | 1.35Å | 1.39Å | |
| C3U | H3U1 | sing | 1.09Å | 1.10Å | |
| C3U | H3U2 | sing | 1.09Å | 1.10Å | |
| C3U | H3U3 | sing | 1.09Å | 1.10Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.43Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.41Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.6° | 109.5° |
| OP1 | P | O5' | 108.1° | 109.5° |
| OP1 | P | OP3 | 86.1° | 109.5° |
| OP2 | P | O5' | 109.5° | 109.4° |
| OP2 | P | OP3 | 99.8° | 109.4° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| O5' | P | OP3 | 34.6° | 109.5° |
| P | O5' | C5' | 120.7° | 123.0° |
| P | OP3 | HOP3 | 86.1° | 114.0° |
| O5' | C5' | C4' | 111.3° | 109.5° |
| O5' | C5' | H5' | 109.0° | 109.4° |
| O5' | C5' | H5'' | 109.0° | 109.5° |
| C4' | C5' | H5' | 109.0° | 109.5° |
| C4' | C5' | H5'' | 109.0° | 109.5° |
| C5' | C4' | O4' | 111.1° | 109.9° |
| C5' | C4' | C3' | 117.3° | 109.9° |
| C5' | C4' | H4' | 108.1° | 109.8° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| O4' | C4' | C3' | 102.9° | 107.3° |
| O4' | C4' | H4' | 109.0° | 109.9° |
| C4' | O4' | C1' | 109.3° | 107.0° |
| C3' | C4' | H4' | 108.1° | 110.0° |
| C4' | C3' | C2' | 102.2° | 104.1° |
| C4' | C3' | O3' | 111.4° | 110.5° |
| C4' | C3' | H3' | 110.2° | 110.5° |
| O4' | C1' | N1 | 109.2° | 110.6° |
| O4' | C1' | C2' | 107.5° | 103.5° |
| O4' | C1' | H1' | 109.7° | 110.6° |
| N1 | C1' | C2' | 113.0° | 110.6° |
| N1 | C1' | H1' | 109.1° | 110.5° |
| C1' | N1 | C6 | 121.5° | 119.7° |
| C1' | N1 | C2 | 117.6° | 119.7° |
| C2' | C1' | H1' | 108.3° | 110.7° |
| C1' | C2' | O2' | 109.2° | 110.9° |
| C1' | C2' | C3' | 101.1° | 102.1° |
| C1' | C2' | H2' | 110.6° | 110.9° |
| C6 | N1 | C2 | 120.9° | 120.6° |
| N1 | C6 | C5 | 122.9° | 119.7° |
| N1 | C6 | H6 | 118.5° | 120.1° |
| N1 | C2 | O2 | 122.7° | 119.5° |
| N1 | C2 | N3 | 114.9° | 121.0° |
| C5 | C6 | H6 | 118.6° | 120.2° |
| C6 | C5 | C4 | 120.0° | 119.1° |
| C6 | C5 | H5 | 120.0° | 120.4° |
| O2 | C2 | N3 | 122.4° | 119.5° |
| C2 | N3 | C3U | 116.5° | 119.9° |
| C2 | N3 | C4 | 126.7° | 120.2° |
| C3U | N3 | C4 | 116.8° | 119.9° |
| N3 | C3U | H3U1 | 109.5° | 109.5° |
| N3 | C3U | H3U2 | 109.5° | 109.5° |
| N3 | C3U | H3U3 | 109.5° | 109.5° |
| N3 | C4 | O4 | 120.0° | 120.3° |
| N3 | C4 | C5 | 114.5° | 119.4° |
| H3U1 | C3U | H3U2 | 109.5° | 109.4° |
| H3U1 | C3U | H3U3 | 109.4° | 109.5° |
| H3U2 | C3U | H3U3 | 109.5° | 109.5° |
| O4 | C4 | C5 | 125.4° | 120.3° |
| C4 | C5 | H5 | 120.0° | 120.5° |
| O2' | C2' | C3' | 112.2° | 110.9° |
| O2' | C2' | H2' | 112.4° | 110.7° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C3' | C2' | H2' | 110.8° | 110.9° |
| C2' | C3' | O3' | 110.4° | 110.5° |
| C2' | C3' | H3' | 110.2° | 110.5° |
| O3' | C3' | H3' | 112.0° | 110.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 125.5° | 120.0° |
| OP1 | P | OP2 | OP3 | 91.1° | 120.0° |
| OP1 | P | O5' | OP3 | 53.1° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| OP1 | P | O5' | C5' | 45.3° | 54.9° |
| OP1 | P | OP3 | HOP3 | 180.0° | 60.0° |
| OP2 | P | O5' | OP3 | 78.7° | 120.0° |
| OP2 | P | O5' | C5' | 177.2° | 65.1° |
| OP2 | P | OP3 | HOP3 | 60.5° | 60.0° |
| O5' | P | OP2 | HOP2 | 125.5° | 60.0° |
| P | O5' | C5' | C4' | 179.5° | 180.0° |
| P | O5' | C5' | H5' | 60.3° | 60.1° |
| P | O5' | C5' | H5'' | 59.2° | 60.0° |
| O5' | P | OP3 | HOP3 | 49.7° | 180.0° |
| OP3 | P | OP2 | HOP2 | 91.1° | 60.0° |
| OP3 | P | O5' | C5' | 98.4° | 175.0° |
| O5' | C5' | C4' | H5' | 120.3° | 119.9° |
| O5' | C5' | C4' | H5'' | 120.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 119.2° | 120.0° |
| O5' | C5' | C4' | O4' | 64.7° | 66.4° |
| O5' | C5' | C4' | C3' | 53.3° | 175.7° |
| O5' | C5' | C4' | H4' | 175.8° | 54.6° |
| C4' | C5' | H5' | H5'' | 119.2° | 120.0° |
| C5' | C4' | O4' | C3' | 126.4° | 119.4° |
| C5' | C4' | O4' | H4' | 118.9° | 121.0° |
| C5' | C4' | C3' | H4' | 122.5° | 121.0° |
| C5' | C4' | O4' | C1' | 152.1° | 146.0° |
| C5' | C4' | C3' | C2' | 162.1° | 121.5° |
| C5' | C4' | C3' | O3' | 80.0° | 119.9° |
| C5' | C4' | C3' | H3' | 44.9° | 2.8° |
| H5' | C5' | C4' | O4' | 175.0° | 53.5° |
| H5' | C5' | C4' | C3' | 66.9° | 64.3° |
| H5' | C5' | C4' | H4' | 55.6° | 174.5° |
| H5'' | C5' | C4' | O4' | 55.6° | 173.6° |
| H5'' | C5' | C4' | C3' | 173.6° | 55.7° |
| H5'' | C5' | C4' | H4' | 63.9° | 65.5° |
| O4' | C4' | C3' | H4' | 115.2° | 119.5° |
| C4' | O4' | C1' | N1 | 124.2° | 158.6° |
| C4' | O4' | C1' | C2' | 1.3° | 40.0° |
| C4' | O4' | C1' | H1' | 116.3° | 78.6° |
| O4' | C4' | C3' | C2' | 39.8° | 2.1° |
| O4' | C4' | C3' | O3' | 157.7° | 120.7° |
| O4' | C4' | C3' | H3' | 77.4° | 116.6° |
| C3' | C4' | O4' | C1' | 25.7° | 26.5° |
| C4' | C3' | C2' | C1' | 38.1° | 20.8° |
| C4' | C3' | C2' | O2' | 78.2° | 139.1° |
| C4' | C3' | C2' | O3' | 118.6° | 118.6° |
| C4' | C3' | C2' | H3' | 117.2° | 118.7° |
| C4' | C3' | C2' | H2' | 155.4° | 97.4° |
| C4' | C3' | O3' | H3' | 124.0° | 122.6° |
| C4' | C3' | O3' | HO3' | 180.0° | 179.9° |
| H4' | C4' | O4' | C1' | 88.9° | 93.1° |
| H4' | C4' | C3' | C2' | 75.5° | 117.4° |
| H4' | C4' | C3' | O3' | 42.5° | 1.2° |
| H4' | C4' | C3' | H3' | 167.4° | 123.9° |
| O4' | C1' | N1 | C2' | 119.6° | 114.1° |
| O4' | C1' | N1 | H1' | 119.9° | 122.9° |
| O4' | C1' | C2' | H1' | 118.5° | 118.6° |
| O4' | C1' | N1 | C6 | 12.4° | 53.5° |
| O4' | C1' | N1 | C2 | 167.2° | 126.7° |
| O4' | C1' | C2' | O2' | 94.9° | 155.3° |
| O4' | C1' | C2' | C3' | 23.5° | 37.0° |
| O4' | C1' | C2' | H2' | 140.8° | 81.2° |
| N1 | C1' | C2' | H1' | 121.0° | 122.9° |
| C1' | N1 | C6 | C2 | 179.6° | 179.8° |
| C1' | N1 | C6 | C5 | 179.1° | 180.0° |
| C1' | N1 | C6 | H6 | 0.9° | 0.0° |
| C1' | N1 | C2 | O2 | 2.2° | 0.0° |
| C1' | N1 | C2 | N3 | 178.5° | 180.0° |
| N1 | C1' | C2' | O2' | 144.5° | 86.2° |
| N1 | C1' | C2' | C3' | 97.0° | 155.5° |
| N1 | C1' | C2' | H2' | 20.3° | 37.3° |
| C2' | C1' | N1 | C6 | 107.1° | 60.6° |
| C2' | C1' | N1 | C2 | 73.3° | 119.2° |
| C1' | C2' | O2' | C3' | 111.2° | 112.8° |
| C1' | C2' | O2' | H2' | 123.2° | 123.6° |
| C1' | C2' | C3' | H2' | 117.3° | 118.2° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 156.7° | 97.8° |
| C1' | C2' | C3' | H3' | 79.1° | 139.5° |
| H1' | C1' | N1 | C6 | 132.3° | 176.4° |
| H1' | C1' | N1 | C2 | 47.3° | 3.8° |
| H1' | C1' | C2' | O2' | 23.5° | 36.7° |
| H1' | C1' | C2' | C3' | 142.0° | 81.6° |
| H1' | C1' | C2' | H2' | 100.7° | 160.2° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 178.2° | 179.8° |
| C6 | N1 | C2 | N3 | 1.1° | 0.3° |
| N1 | C6 | C5 | C4 | 0.1° | 0.0° |
| N1 | C6 | C5 | H5 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.5° | 0.3° |
| C2 | N1 | C6 | H6 | 179.5° | 179.7° |
| N1 | C2 | O2 | N3 | 179.3° | 180.0° |
| N1 | C2 | N3 | C3U | 177.1° | 180.0° |
| N1 | C2 | N3 | C4 | 1.3° | 0.0° |
| C6 | C5 | C4 | N3 | 0.0° | 0.3° |
| C6 | C5 | C4 | O4 | 177.4° | 179.9° |
| C6 | C5 | C4 | H5 | 180.0° | 180.0° |
| H6 | C6 | C5 | C4 | 179.9° | 180.0° |
| H6 | C6 | C5 | H5 | 0.1° | 0.0° |
| O2 | C2 | N3 | C3U | 3.6° | 0.0° |
| O2 | C2 | N3 | C4 | 178.0° | 179.9° |
| C2 | N3 | C3U | C4 | 178.6° | 179.9° |
| C2 | N3 | C3U | H3U1 | 180.0° | 90.0° |
| C2 | N3 | C3U | H3U2 | 60.0° | 150.1° |
| C2 | N3 | C3U | H3U3 | 60.0° | 30.0° |
| C2 | N3 | C4 | O4 | 176.8° | 179.9° |
| C2 | N3 | C4 | C5 | 0.8° | 0.3° |
| N3 | C3U | H3U1 | H3U2 | 120.0° | 120.0° |
| N3 | C3U | H3U1 | H3U3 | 120.0° | 120.0° |
| N3 | C3U | H3U2 | H3U3 | 120.0° | 120.0° |
| C3U | N3 | C4 | O4 | 4.7° | 0.0° |
| C3U | N3 | C4 | C5 | 177.7° | 179.8° |
| C4 | N3 | C3U | H3U1 | 1.4° | 89.9° |
| C4 | N3 | C3U | H3U2 | 121.4° | 30.0° |
| C4 | N3 | C3U | H3U3 | 118.6° | 150.0° |
| N3 | C4 | O4 | C5 | 177.3° | 179.8° |
| N3 | C4 | C5 | H5 | 180.0° | 179.7° |
| H3U1 | C3U | H3U2 | H3U3 | 120.0° | 119.9° |
| O4 | C4 | C5 | H5 | 2.5° | 0.1° |
| O2' | C2' | C3' | H2' | 126.5° | 123.5° |
| O2' | C2' | C3' | O3' | 40.5° | 20.5° |
| O2' | C2' | C3' | H3' | 164.7° | 102.2° |
| C3' | C2' | O2' | HO2' | 68.8° | 67.2° |
| C2' | C3' | O3' | H3' | 123.2° | 122.7° |
| C2' | C3' | O3' | HO3' | 67.2° | 65.2° |
| H2' | C2' | O2' | HO2' | 56.8° | 56.4° |
| H2' | C2' | C3' | O3' | 86.0° | 144.0° |
| H2' | C2' | C3' | H3' | 38.2° | 21.3° |
| H3' | C3' | O3' | HO3' | 56.0° | 57.4° |
