Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

UPU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2AC2Adoub1.22Å1.22Å
C2AN3Asing1.35Å1.34Å
C2AN1Asing1.35Å1.35Å
N3AC4Asing1.35Å1.36Å
N3AHN3Asing0.97Å1.00Å
C4AO4Adoub1.22Å1.37Å
C4AC5Asing1.42Å1.39Å
C5AC6Adoub1.35Å1.40Å
C5AH5Asing1.08Å1.08Å
C6AN1Asing1.37Å1.36Å
C6AH6Asing1.08Å1.08Å
N1AC1'Asing1.46Å1.48Å
C1'AO4'Asing1.44Å1.42Å
C1'AC2'Asing1.55Å1.52Å
C1'AH1'Asing1.09Å1.10Å
O4'AC4'Asing1.44Å1.44Å
C2'AO2'Asing1.43Å1.44Å
C2'AC3'Asing1.55Å1.51Å
C2'AH2ACsing1.09Å1.10Å
O2'AH2AOsing0.97Å0.95Å
C3'AC4'Asing1.54Å1.50Å
C3'AO3'Asing1.43Å1.44Å
C3'AH3ACsing1.09Å1.10Å
O3'AH3AOsing0.97Å0.95Å
C4'AC5'Asing1.53Å1.53Å
C4'AH4'Asing1.09Å1.10Å
C5'AO5'Asing1.43Å1.41Å
C5'AH'A1sing1.09Å1.10Å
C5'AH'A2sing1.09Å1.10Å
O5'APsing1.61Å1.60Å
PO3'Bsing1.61Å1.62Å
PO2doub1.48Å1.52Å
PO1sing1.61Å1.53Å
O1HO1sing0.97Å0.95Å
O3'BC3'Bsing1.43Å1.43Å
C3'BC4'Bsing1.54Å1.52Å
C3'BC2'Bsing1.55Å1.53Å
C3'BH3BCsing1.09Å1.10Å
C4'BO4'Bsing1.44Å1.42Å
C4'BC5'Bsing1.53Å1.52Å
C4'BH4'Bsing1.09Å1.10Å
C5'BO5'Bsing1.43Å1.44Å
C5'BH'B1sing1.09Å1.10Å
C5'BH'B2sing1.09Å1.10Å
O5'BH5'Bsing0.97Å0.95Å
O4'BC1'Bsing1.44Å1.43Å
C2'BC1'Bsing1.55Å1.52Å
C2'BO2'Bsing1.43Å1.42Å
C2'BH2BCsing1.09Å1.10Å
O2'BH2BOsing0.97Å0.95Å
C1'BN1Bsing1.46Å1.48Å
C1'BH1'Bsing1.09Å1.10Å
N1BC6Bsing1.37Å1.36Å
N1BC2Bsing1.35Å1.36Å
C2BO2Bdoub1.22Å1.25Å
C2BN3Bsing1.35Å1.37Å
C6BC5Bdoub1.35Å1.40Å
C6BH6Bsing1.08Å1.08Å
C5BC4Bsing1.42Å1.40Å
C5BH5Bsing1.08Å1.08Å
C4BN3Bsing1.35Å1.36Å
C4BO4Bdoub1.22Å1.25Å
N3BHN3Bsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2AC2AN3A115.5°119.6°
O2AC2AN1A122.0°119.5°
N3AC2AN1A122.6°120.9°
C2AN3AC4A120.3°120.3°
C2AN3AHN3A119.8°119.9°
C2AN1AC6A118.3°120.6°
C2AN1AC1'A121.2°119.7°
C4AN3AHN3A119.8°119.8°
N3AC4AO4A119.7°120.3°
N3AC4AC5A119.8°119.3°
O4AC4AC5A120.6°120.3°
C4AC5AC6A118.1°119.2°
C4AC5AH5A120.9°120.4°
C6AC5AH5A121.0°120.4°
C5AC6AN1A120.8°119.6°
C5AC6AH6A119.6°120.2°
N1AC6AH6A119.6°120.1°
C6AN1AC1'A120.5°119.7°
N1AC1'AO4'A112.1°110.4°
N1AC1'AC2'A106.9°110.4°
N1AC1'AH1'A108.0°110.4°
O4'AC1'AC2'A104.8°104.8°
O4'AC1'AH1'A110.1°110.4°
C1'AO4'AC4'A109.7°105.3°
C2'AC1'AH1'A115.0°110.4°
C1'AC2'AO2'A111.1°110.5°
C1'AC2'AC3'A104.4°104.1°
C1'AC2'AH2AC112.7°110.5°
O4'AC4'AC3'A105.1°104.8°
O4'AC4'AC5'A115.5°110.3°
O4'AC4'AH4'A108.9°110.4°
O2'AC2'AC3'A112.1°110.5°
O2'AC2'AH2AC105.1°110.4°
C2'AO2'AH2AO109.5°114.0°
C3'AC2'AH2AC111.7°110.7°
C2'AC3'AC4'A99.5°104.1°
C2'AC3'AO3'A114.6°110.5°
C2'AC3'AH3AC113.5°110.5°
C4'AC3'AO3'A111.5°110.5°
C4'AC3'AH3AC116.4°110.5°
C3'AC4'AC5'A110.9°110.3°
C3'AC4'AH4'A113.8°110.4°
O3'AC3'AH3AC101.9°110.6°
C3'AO3'AH3AO109.5°114.0°
C5'AC4'AH4'A102.9°110.4°
C4'AC5'AO5'A107.3°109.4°
C4'AC5'AH'A1110.2°109.5°
C4'AC5'AH'A2110.7°109.4°
O5'AC5'AH'A1110.2°109.5°
O5'AC5'AH'A2110.7°109.5°
C5'AO5'AP127.8°123.0°
H'A1C5'AH'A2107.8°109.5°
O5'APO3'B105.8°109.5°
O5'APO2100.4°109.4°
O5'APO1112.0°109.5°
O3'BPO2112.4°109.5°
O3'BPO1106.3°109.5°
PO3'BC3'B122.9°123.0°
O2PO1119.2°109.4°
PO1HO1109.5°114.0°
O3'BC3'BC4'B115.8°110.5°
O3'BC3'BC2'B115.6°110.5°
O3'BC3'BH3BC98.2°110.4°
C4'BC3'BC2'B101.7°104.2°
C4'BC3'BH3BC113.0°110.5°
C3'BC4'BO4'B102.3°107.2°
C3'BC4'BC5'B116.9°109.9°
C3'BC4'BH4'B109.3°109.9°
C2'BC3'BH3BC113.2°110.6°
C3'BC2'BC1'B103.2°102.1°
C3'BC2'BO2'B113.2°110.9°
C3'BC2'BH2BC110.6°110.9°
O4'BC4'BC5'B108.7°109.9°
O4'BC4'BH4'B117.4°109.9°
C4'BO4'BC1'B112.3°107.0°
C5'BC4'BH4'B102.9°110.0°
C4'BC5'BO5'B112.5°109.5°
C4'BC5'BH'B1108.5°109.5°
C4'BC5'BH'B2107.8°109.5°
O5'BC5'BH'B1108.5°109.4°
O5'BC5'BH'B2107.8°109.5°
C5'BO5'BH5'B109.5°114.0°
H'B1C5'BH'B2111.8°109.5°
O4'BC1'BC2'B104.6°103.5°
O4'BC1'BN1B108.5°110.6°
O4'BC1'BH1'B114.5°110.6°
C1'BC2'BO2'B107.8°110.9°
C1'BC2'BH2BC115.9°110.9°
C2'BC1'BN1B113.0°110.7°
C2'BC1'BH1'B110.1°110.6°
O2'BC2'BH2BC106.3°110.8°
C2'BO2'BH2BO109.5°114.0°
N1BC1'BH1'B106.3°110.7°
C1'BN1BC6B119.0°119.7°
C1'BN1BC2B121.3°119.7°
C6BN1BC2B119.6°120.6°
N1BC6BC5B121.1°119.7°
N1BC6BH6B119.4°120.1°
N1BC2BO2B120.3°119.5°
N1BC2BN3B121.3°120.9°
O2BC2BN3B118.5°119.6°
C2BN3BC4B119.9°120.3°
C2BN3BHN3B120.1°119.8°
C5BC6BH6B119.4°120.1°
C6BC5BC4B117.8°119.1°
C6BC5BH5B121.1°120.5°
C4BC5BH5B121.1°120.4°
C5BC4BN3B120.2°119.4°
C5BC4BO4B119.7°120.4°
N3BC4BO4B120.1°120.3°
C4BN3BHN3B120.0°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2AC2AN3AN1A179.3°179.7°
O2AC2AN3AC4A178.7°180.0°
O2AC2AN3AHN3A1.3°0.1°
O2AC2AN1AC6A179.5°179.8°
O2AC2AN1AC1'A0.5°0.0°
C2AN3AC4AHN3A180.0°179.9°
C2AN3AC4AO4A179.1°180.0°
C2AN3AC4AC5A1.9°0.0°
N3AC2AN1AC6A1.2°0.5°
N3AC2AN1AC1'A179.8°179.7°
N1AC2AN3AC4A2.0°0.3°
N1AC2AN3AHN3A178.0°179.7°
C2AN1AC6AC5A0.3°0.5°
C2AN1AC6AC1'A179.0°179.8°
C2AN1AC6AH6A179.7°179.7°
C2AN1AC1'AO4'A153.5°126.5°
C2AN1AC1'AC2'A92.3°118.2°
C2AN1AC1'AH1'A32.0°4.2°
N3AC4AO4AC5A179.0°180.0°
N3AC4AC5AC6A1.0°0.0°
N3AC4AC5AH5A179.0°180.0°
HN3AN3AC4AO4A0.9°0.0°
HN3AN3AC4AC5A178.2°180.0°
O4AC4AC5AC6A179.9°179.9°
O4AC4AC5AH5A0.1°0.1°
C4AC5AC6AH5A180.0°180.0°
C4AC5AC6AN1A0.3°0.2°
C4AC5AC6AH6A179.7°180.0°
C5AC6AN1AH6A180.0°179.8°
C5AC6AN1AC1'A179.4°179.8°
H5AC5AC6AN1A179.7°179.8°
H5AC5AC6AH6A0.3°0.0°
C6AN1AC1'AO4'A27.5°53.8°
C6AN1AC1'AC2'A86.8°61.6°
C6AN1AC1'AH1'A148.9°176.0°
H6AC6AN1AC1'A0.6°0.0°
N1AC1'AO4'AC2'A115.6°118.8°
N1AC1'AO4'AH1'A120.2°122.3°
N1AC1'AC2'AH1'A119.9°122.3°
N1AC1'AO4'AC4'A118.1°159.3°
N1AC1'AC2'AO2'A142.4°98.5°
N1AC1'AC2'AC3'A96.6°142.8°
N1AC1'AC2'AH2AC24.8°24.0°
O4'AC1'AC2'AH1'A121.0°118.8°
O4'AC1'AC2'AO2'A98.5°142.6°
O4'AC1'AC2'AC3'A22.6°24.0°
O4'AC1'AC2'AH2AC143.9°94.8°
C1'AO4'AC4'AC3'A27.0°40.5°
C1'AO4'AC4'AC5'A149.5°159.3°
C1'AO4'AC4'AH4'A95.3°78.3°
C2'AC1'AO4'AC4'A2.5°40.5°
C1'AC2'AO2'AC3'A116.4°114.6°
C1'AC2'AO2'AH2AC122.1°122.6°
C1'AC2'AC3'AH2AC122.0°118.7°
C1'AC2'AO2'AH2AO6.4°180.0°
C1'AC2'AC3'AC4'A37.2°0.0°
C1'AC2'AC3'AO3'A156.2°118.7°
C1'AC2'AC3'AH3AC87.2°118.7°
H1'AC1'AO4'AC4'A121.7°78.4°
H1'AC1'AC2'AO2'A22.5°23.8°
H1'AC1'AC2'AC3'A143.5°94.9°
H1'AC1'AC2'AH2AC95.1°146.3°
O4'AC4'AC3'AC2'A39.1°24.0°
O4'AC4'AC3'AC5'A125.5°118.8°
O4'AC4'AC3'AH4'A119.1°118.9°
O4'AC4'AC3'AO3'A160.4°142.7°
O4'AC4'AC3'AH3AC83.2°94.6°
O4'AC4'AC5'AH4'A118.6°122.3°
O4'AC4'AC5'AO5'A39.9°66.5°
O4'AC4'AC5'AH'A180.1°173.6°
O4'AC4'AC5'AH'A2160.8°53.6°
O2'AC2'AC3'AH2AC117.6°122.6°
O2'AC2'AC3'AC4'A83.2°118.6°
O2'AC2'AC3'AO3'A35.9°0.0°
O2'AC2'AC3'AH3AC152.4°122.7°
C3'AC2'AO2'AH2AO122.8°65.4°
C2'AC3'AC4'AO3'A121.3°118.7°
C2'AC3'AC4'AH3AC122.4°118.6°
C2'AC3'AO3'AH3AC123.0°122.6°
C2'AC3'AO3'AH3AO62.5°61.4°
C2'AC3'AC4'AC5'A164.6°142.8°
C2'AC3'AC4'AH4'A80.0°94.9°
H2ACC2'AO2'AH2AO115.7°57.4°
H2ACC2'AC3'AC4'A159.2°118.7°
H2ACC2'AC3'AO3'A81.7°122.6°
H2ACC2'AC3'AH3AC34.8°0.1°
C4'AC3'AO3'AH3AC124.9°122.7°
C4'AC3'AO3'AH3AO174.5°176.1°
C3'AC4'AC5'AH4'A122.0°122.3°
C3'AC4'AC5'AO5'A79.5°178.2°
C3'AC4'AC5'AH'A1160.5°58.2°
C3'AC4'AC5'AH'A241.4°61.8°
O3'AC3'AC4'AC5'A74.1°98.5°
O3'AC3'AC4'AH4'A41.3°23.8°
H3ACC3'AO3'AH3AO60.6°61.2°
H3ACC3'AC4'AC5'A42.2°24.2°
H3ACC3'AC4'AH4'A157.7°146.5°
C4'AC5'AO5'AH'A1120.0°120.0°
C4'AC5'AO5'AH'A2120.9°120.0°
C4'AC5'AH'A1H'A2120.9°120.0°
C4'AC5'AO5'AP167.7°180.0°
H4'AC4'AC5'AO5'A158.5°55.8°
H4'AC4'AC5'AH'A138.5°64.1°
H4'AC4'AC5'AH'A280.6°175.9°
O5'AC5'AH'A1H'A2120.9°120.1°
C5'AO5'APO3'B91.8°175.0°
C5'AO5'APO2151.2°55.0°
C5'AO5'APO123.7°65.0°
H'A1C5'AO5'AP47.7°60.0°
H'A2C5'AO5'AP71.4°60.0°
O5'APO3'BO2108.6°120.0°
O5'APO3'BO1119.3°120.0°
O5'APO2O1122.6°120.0°
O5'APO1HO165.0°60.0°
O5'APO3'BC3'B48.7°175.0°
O3'BPO2O1125.3°120.0°
O3'BPO1HO1179.8°60.0°
PO3'BC3'BC4'B137.1°121.4°
PO3'BC3'BC2'B104.1°123.7°
PO3'BC3'BH3BC16.5°1.1°
O2PO1HO151.7°179.9°
O2PO3'BC3'B59.9°55.0°
O1PO3'BC3'B168.0°65.0°
O3'BC3'BC4'BC2'B126.2°118.7°
O3'BC3'BC4'BH3BC112.2°122.5°
O3'BC3'BC2'BH3BC112.2°122.6°
O3'BC3'BC4'BO4'B165.0°120.7°
O3'BC3'BC4'BC5'B76.4°119.9°
O3'BC3'BC4'BH4'B39.9°1.3°
O3'BC3'BC2'BC1'B162.3°97.8°
O3'BC3'BC2'BO2'B46.1°20.4°
O3'BC3'BC2'BH2BC73.1°144.0°
C4'BC3'BC2'BH3BC121.5°118.8°
C3'BC4'BO4'BC5'B124.2°119.4°
C3'BC4'BO4'BH4'B119.6°119.4°
C3'BC4'BC5'BH4'B119.8°121.1°
C3'BC4'BC5'BO5'B37.9°175.0°
C3'BC4'BC5'BH'B1157.9°55.0°
C3'BC4'BC5'BH'B280.8°65.0°
C3'BC4'BO4'BC1'B28.1°26.5°
C4'BC3'BC2'BC1'B36.1°20.9°
C4'BC3'BC2'BO2'B80.1°139.1°
C4'BC3'BC2'BH2BC160.6°97.3°
C2'BC3'BC4'BO4'B38.8°2.0°
C2'BC3'BC4'BC5'B157.4°121.4°
C2'BC3'BC4'BH4'B86.3°117.4°
C3'BC2'BC1'BO4'B20.0°37.0°
C3'BC2'BC1'BO2'B120.0°118.2°
C3'BC2'BC1'BH2BC121.1°118.2°
C3'BC2'BO2'BH2BC121.7°123.7°
C3'BC2'BO2'BH2BO73.3°180.0°
C3'BC2'BC1'BN1B97.9°155.5°
C3'BC2'BC1'BH1'B143.4°81.5°
H3BCC3'BC4'BO4'B82.8°116.8°
H3BCC3'BC4'BC5'B35.8°2.6°
H3BCC3'BC4'BH4'B152.1°123.8°
H3BCC3'BC2'BC1'B85.5°139.6°
H3BCC3'BC2'BO2'B158.3°102.2°
H3BCC3'BC2'BH2BC39.1°21.5°
O4'BC4'BC5'BH4'B125.2°121.1°
O4'BC4'BC5'BO5'B77.1°67.2°
O4'BC4'BC5'BH'B142.9°172.8°
O4'BC4'BC5'BH'B2164.1°52.8°
C4'BO4'BC1'BC2'B5.1°40.1°
C4'BO4'BC1'BN1B126.0°158.6°
C4'BO4'BC1'BH1'B115.5°78.4°
C4'BC5'BO5'BH'B1120.0°120.0°
C4'BC5'BO5'BH'B2118.7°120.0°
C4'BC5'BH'B1H'B2118.7°120.0°
C4'BC5'BO5'BH5'B108.9°180.0°
C5'BC4'BO4'BC1'B152.4°145.9°
H4'BC4'BC5'BO5'B157.7°53.9°
H4'BC4'BC5'BH'B182.3°66.1°
H4'BC4'BC5'BH'B239.0°173.9°
H4'BC4'BO4'BC1'B91.4°92.9°
O5'BC5'BH'B1H'B2118.8°120.0°
H'B1C5'BO5'BH5'B11.1°60.0°
H'B2C5'BO5'BH5'B132.4°60.0°
O4'BC1'BC2'BN1B117.9°118.5°
O4'BC1'BC2'BH1'B123.4°118.5°
O4'BC1'BC2'BO2'B100.0°155.2°
O4'BC1'BC2'BH2BC141.1°81.2°
O4'BC1'BN1BH1'B123.6°122.9°
O4'BC1'BN1BC6B13.9°126.5°
O4'BC1'BN1BC2B165.9°53.8°
C1'BC2'BO2'BH2BC124.8°123.6°
C1'BC2'BO2'BH2BO173.3°67.2°
C2'BC1'BN1BH1'B120.9°123.0°
C2'BC1'BN1BC6B101.6°119.5°
C2'BC1'BN1BC2B78.5°60.3°
O2'BC2'BC1'BN1B142.1°86.3°
O2'BC2'BC1'BH1'B23.4°36.8°
H2BCC2'BO2'BH2BO48.4°56.3°
H2BCC2'BC1'BN1B23.2°37.3°
H2BCC2'BC1'BH1'B95.5°160.3°
C1'BN1BC6BC2B179.9°179.7°
C1'BN1BC2BO2B1.2°0.1°
C1'BN1BC2BN3B179.8°179.9°
C1'BN1BC6BC5B179.7°180.0°
C1'BN1BC6BH6B0.3°0.0°
H1'BC1'BN1BC6B137.5°3.5°
H1'BC1'BN1BC2B42.3°176.7°
C6BN1BC2BO2B178.9°179.7°
C6BN1BC2BN3B0.1°0.2°
N1BC6BC5BH6B180.0°180.0°
N1BC6BC5BC4B0.4°0.0°
N1BC6BC5BH5B179.6°180.0°
N1BC2BO2BN3B179.0°179.9°
C2BN1BC6BC5B0.4°0.2°
C2BN1BC6BH6B179.6°179.7°
N1BC2BN3BC4B0.6°0.0°
N1BC2BN3BHN3B179.4°179.9°
O2BC2BN3BC4B178.4°179.9°
O2BC2BN3BHN3B1.6°0.0°
C2BN3BC4BC5B0.6°0.3°
C2BN3BC4BHN3B180.0°180.0°
C2BN3BC4BO4B179.8°180.0°
C6BC5BC4BH5B180.0°180.0°
C6BC5BC4BN3B0.1°0.3°
C6BC5BC4BO4B179.8°180.0°
H6BC6BC5BC4B179.6°180.0°
H6BC6BC5BH5B0.4°0.0°
C5BC4BN3BO4B179.7°179.7°
C5BC4BN3BHN3B179.4°179.7°
H5BC5BC4BN3B179.9°179.7°
H5BC5BC4BO4B0.2°0.0°
O4BC4BN3BHN3B0.2°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon