Obsolete: UPR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PA | O1A | sing | 1.72Å | 1.59Å | |
| PA | O2A | sing | 1.72Å | 1.58Å | |
| PA | O3A | sing | 1.72Å | 1.90Å | |
| PA | N3A | sing | 1.81Å | 1.88Å | |
| PA | O5' | sing | 1.72Å | 1.61Å | |
| O1A | H1A | sing | 0.97Å | 0.95Å | |
| O2A | H2A | sing | 0.97Å | 0.95Å | |
| O3A | H3A | sing | 0.97Å | 0.95Å | |
| N3A | PB | sing | 1.68Å | 1.65Å | |
| N3A | H2 | sing | 1.01Å | 1.00Å | |
| PB | O1B | doub | 1.48Å | 1.53Å | |
| PB | O2B | sing | 1.61Å | 1.44Å | |
| PB | O3B | sing | 1.61Å | 1.61Å | |
| O2B | H2B | sing | 0.97Å | 0.95Å | |
| O3B | PG | sing | 1.61Å | 1.62Å | |
| PG | O2G | doub | 1.48Å | 1.49Å | |
| PG | O1G | sing | 1.61Å | 1.52Å | |
| PG | O3G | sing | 1.61Å | 1.52Å | |
| O1G | H1G | sing | 0.97Å | 0.95Å | |
| O3G | H3G | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.49Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.40Å | |
| C4' | C3' | sing | 1.55Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.44Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | H1 | sing | 1.09Å | 1.10Å | |
| O3' | H3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.47Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.26Å | |
| C2 | N3 | sing | 1.35Å | 1.33Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.26Å | |
| C4 | C5 | sing | 1.42Å | 1.36Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1A | PA | O2A | 122.6° | 120.0° |
| O1A | PA | O3A | 85.4° | 90.0° |
| O1A | PA | N3A | 91.9° | 90.0° |
| O1A | PA | O5' | 126.5° | 120.0° |
| PA | O1A | H1A | 109.5° | 114.0° |
| O2A | PA | O3A | 90.1° | 90.0° |
| O2A | PA | N3A | 96.5° | 90.0° |
| O2A | PA | O5' | 110.6° | 120.0° |
| PA | O2A | H2A | 109.5° | 114.0° |
| O3A | PA | N3A | 173.3° | 180.0° |
| O3A | PA | O5' | 89.4° | 90.0° |
| PA | O3A | H3A | 109.5° | 114.0° |
| N3A | PA | O5' | 87.4° | 90.0° |
| PA | N3A | PB | 124.2° | 111.0° |
| PA | N3A | H2 | 105.7° | 111.0° |
| PA | O5' | C5' | 118.0° | 114.0° |
| PB | N3A | H2 | 105.7° | 111.0° |
| N3A | PB | O1B | 114.4° | 109.5° |
| N3A | PB | O2B | 96.4° | 109.5° |
| N3A | PB | O3B | 107.2° | 109.4° |
| O1B | PB | O2B | 116.9° | 109.5° |
| O1B | PB | O3B | 110.0° | 109.5° |
| O2B | PB | O3B | 111.0° | 109.4° |
| PB | O2B | H2B | 109.5° | 114.0° |
| PB | O3B | PG | 123.9° | 134.0° |
| O3B | PG | O2G | 114.0° | 109.5° |
| O3B | PG | O1G | 110.6° | 109.5° |
| O3B | PG | O3G | 104.8° | 109.5° |
| O2G | PG | O1G | 106.7° | 109.4° |
| O2G | PG | O3G | 108.7° | 109.5° |
| O1G | PG | O3G | 112.1° | 109.5° |
| PG | O1G | H1G | 109.5° | 114.0° |
| PG | O3G | H3G | 109.5° | 114.0° |
| O5' | C5' | C4' | 104.6° | 109.4° |
| O5' | C5' | H5'1 | 110.7° | 109.6° |
| O5' | C5' | H5'2 | 110.6° | 109.4° |
| C4' | C5' | H5'1 | 110.7° | 109.4° |
| C4' | C5' | H5'2 | 110.7° | 109.5° |
| C5' | C4' | O4' | 111.3° | 110.6° |
| C5' | C4' | C3' | 119.4° | 110.6° |
| C5' | C4' | H4' | 104.4° | 110.5° |
| H5'1 | C5' | H5'2 | 109.5° | 109.5° |
| O4' | C4' | C3' | 110.6° | 103.5° |
| O4' | C4' | H4' | 105.4° | 110.6° |
| C4' | O4' | C1' | 108.9° | 107.0° |
| C3' | C4' | H4' | 104.4° | 110.7° |
| C4' | C3' | O3' | 118.1° | 110.9° |
| C4' | C3' | C2' | 104.2° | 102.1° |
| C4' | C3' | H1 | 104.5° | 111.0° |
| O4' | C1' | C2' | 108.0° | 107.3° |
| O4' | C1' | N1 | 110.9° | 109.9° |
| O4' | C1' | H1' | 111.7° | 109.9° |
| O3' | C3' | C2' | 118.6° | 110.9° |
| O3' | C3' | H1 | 105.3° | 110.8° |
| C3' | O3' | H3' | 109.5° | 114.0° |
| C2' | C3' | H1 | 104.4° | 110.9° |
| C3' | C2' | C1' | 105.3° | 104.1° |
| C3' | C2' | H2'1 | 110.5° | 110.5° |
| C3' | C2' | H2'2 | 110.5° | 110.5° |
| C1' | C2' | H2'1 | 110.5° | 110.5° |
| C1' | C2' | H2'2 | 110.5° | 110.5° |
| C2' | C1' | N1 | 103.9° | 109.9° |
| C2' | C1' | H1' | 110.3° | 109.9° |
| H2'1 | C2' | H2'2 | 109.5° | 110.6° |
| N1 | C1' | H1' | 111.7° | 110.0° |
| C1' | N1 | C2 | 120.8° | 119.7° |
| C1' | N1 | C6 | 118.9° | 119.7° |
| C2 | N1 | C6 | 119.9° | 120.6° |
| N1 | C2 | O2 | 119.4° | 119.5° |
| N1 | C2 | N3 | 119.1° | 120.9° |
| N1 | C6 | C5 | 118.7° | 119.7° |
| N1 | C6 | H6 | 120.7° | 120.2° |
| O2 | C2 | N3 | 121.3° | 119.6° |
| C2 | N3 | C4 | 123.2° | 120.3° |
| C2 | N3 | HN3 | 118.4° | 119.8° |
| C4 | N3 | HN3 | 118.4° | 119.8° |
| N3 | C4 | O4 | 119.2° | 120.3° |
| N3 | C4 | C5 | 118.5° | 119.3° |
| O4 | C4 | C5 | 122.3° | 120.3° |
| C4 | C5 | C6 | 120.4° | 119.2° |
| C4 | C5 | H5 | 119.8° | 120.4° |
| C6 | C5 | H5 | 119.8° | 120.4° |
| C5 | C6 | H6 | 120.6° | 120.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1A | PA | O2A | O3A | 84.6° | 90.0° |
| O1A | PA | O2A | N3A | 96.4° | 90.0° |
| O1A | PA | O2A | O5' | 174.0° | 180.0° |
| O1A | PA | O3A | N3A | 65.8° | 162.4° |
| O1A | PA | O3A | O5' | 126.7° | 120.0° |
| O1A | PA | N3A | O5' | 126.4° | 120.0° |
| O1A | PA | O2A | H2A | 180.0° | 124.5° |
| O1A | PA | O3A | H3A | 180.0° | 0.4° |
| O1A | PA | N3A | PB | 4.8° | 61.4° |
| O1A | PA | N3A | H2 | 117.2° | 174.6° |
| O1A | PA | O5' | C5' | 0.4° | 173.0° |
| O2A | PA | O3A | N3A | 171.5° | 42.4° |
| O2A | PA | O3A | O5' | 110.6° | 120.0° |
| O2A | PA | N3A | O5' | 110.5° | 120.0° |
| O2A | PA | O1A | H1A | 164.4° | 179.9° |
| O2A | PA | O3A | H3A | 57.3° | 119.6° |
| O2A | PA | N3A | PB | 127.9° | 58.6° |
| O2A | PA | N3A | H2 | 5.9° | 65.4° |
| O2A | PA | O5' | C5' | 174.1° | 7.0° |
| O3A | PA | N3A | O5' | 61.0° | 77.6° |
| O3A | PA | O1A | H1A | 108.4° | 90.0° |
| O3A | PA | O2A | H2A | 95.4° | 145.5° |
| O3A | PA | N3A | PB | 60.6° | 101.0° |
| O3A | PA | N3A | H2 | 177.4° | 23.0° |
| O3A | PA | O5' | C5' | 84.2° | 83.0° |
| N3A | PA | O1A | H1A | 65.5° | 90.1° |
| N3A | PA | O2A | H2A | 83.6° | 34.5° |
| N3A | PA | O3A | H3A | 114.2° | 162.0° |
| PA | N3A | PB | H2 | 122.0° | 123.9° |
| PA | N3A | PB | O1B | 45.3° | 61.7° |
| PA | N3A | PB | O2B | 168.7° | 58.3° |
| PA | N3A | PB | O3B | 76.9° | 178.3° |
| N3A | PA | O5' | C5' | 90.0° | 97.0° |
| O5' | PA | O1A | H1A | 22.6° | 0.0° |
| O5' | PA | O2A | H2A | 6.0° | 55.5° |
| O5' | PA | O3A | H3A | 53.3° | 120.4° |
| O5' | PA | N3A | PB | 121.6° | 178.6° |
| O5' | PA | N3A | H2 | 116.4° | 54.6° |
| PA | O5' | C5' | C4' | 150.5° | 176.6° |
| PA | O5' | C5' | H5'1 | 31.3° | 63.4° |
| PA | O5' | C5' | H5'2 | 90.3° | 56.7° |
| N3A | PB | O1B | O2B | 111.5° | 120.1° |
| N3A | PB | O1B | O3B | 120.7° | 120.0° |
| N3A | PB | O2B | O3B | 111.2° | 120.0° |
| N3A | PB | O2B | H2B | 121.5° | 60.0° |
| N3A | PB | O3B | PG | 109.7° | 180.0° |
| H2 | N3A | PB | O1B | 76.7° | 174.3° |
| H2 | N3A | PB | O2B | 46.7° | 65.6° |
| H2 | N3A | PB | O3B | 161.1° | 54.3° |
| O1B | PB | O2B | O3B | 127.3° | 120.0° |
| O1B | PB | O2B | H2B | 0.0° | 179.9° |
| O1B | PB | O3B | PG | 15.3° | 59.9° |
| O2B | PB | O3B | PG | 146.2° | 60.0° |
| O3B | PB | O2B | H2B | 127.3° | 60.0° |
| PB | O3B | PG | O2G | 45.4° | 45.1° |
| PB | O3B | PG | O1G | 74.8° | 165.0° |
| PB | O3B | PG | O3G | 164.2° | 75.0° |
| O3B | PG | O2G | O1G | 122.4° | 120.0° |
| O3B | PG | O2G | O3G | 116.5° | 120.1° |
| O3B | PG | O1G | O3G | 116.6° | 120.0° |
| O3B | PG | O1G | H1G | 124.5° | 180.0° |
| O3B | PG | O3G | H3G | 122.2° | 59.9° |
| O2G | PG | O1G | O3G | 119.0° | 120.0° |
| O2G | PG | O1G | H1G | 0.0° | 60.0° |
| O2G | PG | O3G | H3G | 0.0° | 180.0° |
| O1G | PG | O3G | H3G | 117.8° | 60.1° |
| O3G | PG | O1G | H1G | 119.0° | 59.9° |
| O5' | C5' | C4' | H5'1 | 119.2° | 120.1° |
| O5' | C5' | C4' | H5'2 | 119.2° | 119.9° |
| O5' | C5' | H5'1 | H5'2 | 122.2° | 120.0° |
| O5' | C5' | C4' | O4' | 61.0° | 66.5° |
| O5' | C5' | C4' | C3' | 69.8° | 179.4° |
| O5' | C5' | C4' | H4' | 174.2° | 56.4° |
| C4' | C5' | H5'1 | H5'2 | 122.3° | 120.0° |
| C5' | C4' | O4' | C3' | 135.2° | 118.5° |
| C5' | C4' | O4' | H4' | 112.6° | 122.8° |
| C5' | C4' | C3' | H4' | 116.0° | 122.9° |
| C5' | C4' | O4' | C1' | 150.5° | 158.5° |
| C5' | C4' | C3' | O3' | 76.7° | 86.3° |
| C5' | C4' | C3' | C2' | 149.3° | 155.5° |
| C5' | C4' | C3' | H1 | 39.9° | 37.3° |
| H5'1 | C5' | C4' | O4' | 179.8° | 53.6° |
| H5'1 | C5' | C4' | C3' | 49.4° | 60.5° |
| H5'1 | C5' | C4' | H4' | 66.6° | 176.4° |
| H5'2 | C5' | C4' | O4' | 58.2° | 173.6° |
| H5'2 | C5' | C4' | C3' | 171.0° | 59.5° |
| H5'2 | C5' | C4' | H4' | 55.0° | 63.5° |
| O4' | C4' | C3' | H4' | 112.9° | 118.5° |
| O4' | C4' | C3' | O3' | 152.2° | 155.2° |
| O4' | C4' | C3' | C2' | 18.2° | 37.0° |
| O4' | C4' | C3' | H1 | 91.2° | 81.3° |
| C4' | O4' | C1' | C2' | 5.9° | 26.5° |
| C4' | O4' | C1' | N1 | 119.1° | 145.9° |
| C4' | O4' | C1' | H1' | 115.5° | 93.0° |
| C3' | C4' | O4' | C1' | 15.3° | 40.0° |
| C4' | C3' | O3' | C2' | 127.5° | 112.8° |
| C4' | C3' | O3' | H1 | 116.2° | 123.7° |
| C4' | C3' | C2' | H1 | 109.4° | 118.3° |
| C4' | C3' | O3' | H3' | 180.0° | 180.0° |
| C4' | C3' | C2' | C1' | 13.6° | 20.8° |
| C4' | C3' | C2' | H2'1 | 132.9° | 139.5° |
| C4' | C3' | C2' | H2'2 | 105.8° | 97.8° |
| H4' | C4' | O4' | C1' | 96.9° | 78.6° |
| H4' | C4' | C3' | O3' | 39.3° | 36.6° |
| H4' | C4' | C3' | C2' | 94.7° | 81.6° |
| H4' | C4' | C3' | H1 | 155.9° | 160.2° |
| O4' | C1' | C2' | C3' | 5.3° | 2.0° |
| O4' | C1' | C2' | N1 | 117.8° | 119.5° |
| O4' | C1' | C2' | H1' | 122.3° | 119.4° |
| O4' | C1' | C2' | H2'1 | 124.7° | 116.6° |
| O4' | C1' | C2' | H2'2 | 114.0° | 120.7° |
| O4' | C1' | N1 | H1' | 125.3° | 121.1° |
| O4' | C1' | N1 | C2 | 142.4° | 126.4° |
| O4' | C1' | N1 | C6 | 43.6° | 53.3° |
| O3' | C3' | C2' | H1 | 116.8° | 123.5° |
| O3' | C3' | C2' | C1' | 147.4° | 139.1° |
| O3' | C3' | C2' | H2'1 | 93.3° | 102.2° |
| O3' | C3' | C2' | H2'2 | 28.1° | 20.5° |
| C2' | C3' | O3' | H3' | 52.5° | 67.3° |
| C3' | C2' | C1' | H2'1 | 119.4° | 118.7° |
| C3' | C2' | C1' | H2'2 | 119.3° | 118.6° |
| C3' | C2' | H2'1 | H2'2 | 121.9° | 122.7° |
| C3' | C2' | C1' | N1 | 112.5° | 121.5° |
| C3' | C2' | C1' | H1' | 127.6° | 117.4° |
| H1 | C3' | O3' | H3' | 63.8° | 56.3° |
| H1 | C3' | C2' | C1' | 95.8° | 97.4° |
| H1 | C3' | C2' | H2'1 | 23.5° | 21.3° |
| H1 | C3' | C2' | H2'2 | 144.8° | 144.0° |
| C1' | C2' | H2'1 | H2'2 | 121.9° | 122.6° |
| C2' | C1' | N1 | H1' | 118.9° | 121.0° |
| C2' | C1' | N1 | C2 | 101.9° | 115.7° |
| C2' | C1' | N1 | C6 | 72.1° | 64.6° |
| H2'1 | C2' | C1' | N1 | 6.9° | 2.8° |
| H2'1 | C2' | C1' | H1' | 113.0° | 123.9° |
| H2'2 | C2' | C1' | N1 | 128.2° | 119.8° |
| H2'2 | C2' | C1' | H1' | 8.3° | 1.3° |
| C1' | N1 | C2 | C6 | 173.9° | 179.7° |
| C1' | N1 | C2 | O2 | 6.7° | 0.0° |
| C1' | N1 | C2 | N3 | 178.4° | 180.0° |
| C1' | N1 | C6 | C5 | 176.1° | 179.7° |
| C1' | N1 | C6 | H6 | 3.9° | 0.0° |
| H1' | C1' | N1 | C2 | 17.0° | 5.4° |
| H1' | C1' | N1 | C6 | 169.0° | 174.4° |
| N1 | C2 | O2 | N3 | 174.8° | 180.0° |
| N1 | C2 | N3 | C4 | 5.3° | 0.0° |
| N1 | C2 | N3 | HN3 | 174.7° | 180.0° |
| C2 | N1 | C6 | C5 | 2.0° | 0.6° |
| C2 | N1 | C6 | H6 | 178.0° | 179.7° |
| C6 | N1 | C2 | O2 | 179.4° | 179.7° |
| C6 | N1 | C2 | N3 | 4.4° | 0.3° |
| N1 | C6 | C5 | C4 | 0.3° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.7° | 179.7° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.1° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 178.7° | 180.0° |
| C2 | N3 | C4 | C5 | 3.5° | 0.0° |
| N3 | C4 | O4 | C5 | 177.6° | 180.0° |
| N3 | C4 | C5 | C6 | 0.9° | 0.3° |
| N3 | C4 | C5 | H5 | 179.1° | 180.0° |
| HN3 | N3 | C4 | O4 | 1.3° | 0.1° |
| HN3 | N3 | C4 | C5 | 176.4° | 180.0° |
| O4 | C4 | C5 | C6 | 178.6° | 179.7° |
| O4 | C4 | C5 | H5 | 1.4° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.7° |
| C4 | C5 | C6 | H6 | 179.7° | 179.7° |
| H5 | C5 | C6 | H6 | 0.3° | 0.0° |
