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UPN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2C1sing1.53Å1.56Å
O1C1sing1.43Å1.54Å
C1O5sing1.43Å1.44Å
C1H1sing1.09Å1.10Å
O1PBsing1.61Å1.55Å
N2C2sing1.46Å1.47Å
C2C3sing1.53Å1.55Å
C2H2sing1.09Å1.10Å
C7N2sing1.35Å1.34Å
N2HN2sing0.97Å1.00Å
O3C3sing1.43Å1.39Å
C3C4sing1.53Å1.57Å
C3H3sing1.09Å1.10Å
C2EO3sing1.36Å1.45Å
C4O4sing1.43Å1.38Å
C4C5sing1.53Å1.54Å
C4H4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
O5C5sing1.43Å1.47Å
C5C6sing1.53Å1.51Å
C5H5sing1.09Å1.10Å
C6O6sing1.43Å1.42Å
C6H6sing1.09Å1.10Å
C6H6Asing1.09Å1.10Å
O6HO6sing0.97Å0.95Å
C8C7sing1.51Å1.48Å
C7O7doub1.21Å1.20Å
C8H8sing1.09Å1.10Å
C8H8Asing1.09Å1.10Å
C8H8Bsing1.09Å1.10Å
O3APAsing1.61Å1.49Å
O1APAdoub1.48Å1.46Å
PAO5Dsing1.61Å1.53Å
PAO2Asing1.61Å1.45Å
O2BPBdoub1.48Å1.45Å
O1BPBsing1.61Å1.40Å
PBO3Asing1.61Å1.54Å
O1BHO1Bsing0.97Å0.95Å
C2DC1Dsing1.54Å1.50Å
N1UC1Dsing1.47Å1.50Å
C1DO4Dsing1.44Å1.40Å
C1DH1Dsing1.09Å1.10Å
O2EC1Edoub1.21Å1.23Å
O1EC1Esing1.35Å1.24Å
C1EC2Esing1.47Å1.43Å
O1EHO1Esing0.97Å0.95Å
C6UN1Using1.37Å1.40Å
N1UC2Using1.34Å1.41Å
O2AHO2Asing0.97Å0.95Å
O2DC2Dsing1.43Å1.53Å
C2DC3Dsing1.54Å1.57Å
C2DH2Dsing1.09Å1.10Å
O2DHO2Dsing0.97Å0.95Å
C2EC3Edoub1.33Å1.35Å
N3UC2Using1.35Å1.32Å
C2UO2Udoub1.22Å1.22Å
C3DC4Dsing1.54Å1.59Å
C3DO3Dsing1.43Å1.51Å
C3DH3Dsing1.09Å1.10Å
O3DHO3Dsing0.97Å0.95Å
C3EH3Esing1.08Å1.08Å
C3EH3EAsing1.08Å1.08Å
C4UN3Using1.35Å1.36Å
C5DC4Dsing1.53Å1.56Å
C4DO4Dsing1.44Å1.44Å
C4DH4Dsing1.09Å1.10Å
C5UC4Using1.42Å1.46Å
O4UC4Udoub1.22Å1.21Å
O5DC5Dsing1.43Å1.43Å
C5DH5Dsing1.09Å1.10Å
C5DH5DAsing1.09Å1.10Å
C5UC6Udoub1.35Å1.38Å
C5UH5Using1.08Å1.08Å
C6UH6Using1.08Å1.08Å
N3UHN3Using0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1107.1°109.5°
C2C1O5105.3°109.4°
C2C1H1113.7°109.4°
C1C2N2108.0°109.5°
C1C2C3112.5°109.2°
C1C2H2109.2°109.5°
O1C1O5109.8°109.5°
O1C1H1109.6°109.5°
C1O1PB119.4°123.0°
O5C1H1111.2°109.5°
C1O5C5122.9°114.1°
O1PBO2B107.9°109.5°
O1PBO1B102.6°109.5°
O1PBO3A108.8°109.5°
N2C2C3111.7°109.5°
N2C2H2110.0°109.6°
C2N2C7126.5°120.0°
C2N2HN2116.7°120.0°
C3C2H2105.4°109.5°
C2C3O3107.3°109.6°
C2C3C4112.4°109.1°
C2C3H3108.8°109.5°
C7N2HN2116.7°119.9°
N2C7C8116.1°120.1°
N2C7O7126.0°119.9°
O3C3C4109.1°109.5°
O3C3H3112.2°109.6°
C3O3C2E115.9°117.1°
C4C3H3107.1°109.5°
C3C4O4106.3°109.5°
C3C4C5108.7°109.1°
C3C4H4112.1°109.6°
O3C2EC1E108.9°120.0°
O3C2EC3E130.3°120.0°
O4C4C5109.6°109.5°
O4C4H4111.2°109.5°
C4O4HO4109.5°114.0°
C5C4H4108.9°109.5°
C4C5O5114.5°109.4°
C4C5C6110.5°109.4°
C4C5H5104.0°109.4°
O5C5C6105.5°109.5°
O5C5H5109.2°109.5°
C6C5H5113.3°109.5°
C5C6O6100.8°109.4°
C5C6H6112.5°109.5°
C5C6H6A112.5°109.5°
O6C6H6112.5°109.4°
O6C6H6A112.5°109.4°
C6O6HO6109.5°114.0°
H6C6H6A106.3°109.5°
C8C7O7117.8°120.0°
C7C8H8109.5°109.5°
C7C8H8A109.5°109.5°
C7C8H8B109.4°109.5°
H8C8H8A109.5°109.5°
H8C8H8B109.5°109.4°
H8AC8H8B109.5°109.5°
O3APAO1A114.6°109.4°
O3APAO5D114.4°109.5°
O3APAO2A98.8°109.5°
PAO3APB128.0°134.0°
O1APAO5D110.4°109.5°
O1APAO2A108.9°109.5°
O5DPAO2A108.8°109.5°
PAO5DC5D122.9°123.0°
PAO2AHO2A109.5°114.0°
O2BPBO1B112.1°109.5°
O2BPBO3A112.9°109.5°
O1BPBO3A112.0°109.4°
PBO1BHO1B109.5°114.1°
C2DC1DN1U117.2°110.5°
C2DC1DO4D103.9°104.8°
C2DC1DH1D107.4°110.4°
C1DC2DO2D117.7°110.5°
C1DC2DC3D100.0°104.1°
C1DC2DH2D115.3°110.5°
N1UC1DO4D107.0°110.4°
N1UC1DH1D104.3°110.3°
C1DN1UC6U120.2°119.7°
C1DN1UC2U120.8°119.7°
O4DC1DH1D117.5°110.4°
C1DO4DC4D110.1°105.3°
O2EC1EO1E128.2°120.0°
O2EC1EC2E118.1°120.0°
O1EC1EC2E113.7°120.0°
C1EO1EHO1E109.5°117.0°
C1EC2EC3E120.7°120.0°
C6UN1UC2U119.0°120.6°
N1UC6UC5U120.3°119.7°
N1UC6UH6U119.8°120.2°
N1UC2UN3U119.0°120.9°
N1UC2UO2U122.9°119.6°
O2DC2DC3D120.3°110.5°
O2DC2DH2D92.0°110.5°
C2DO2DHO2D109.5°114.0°
C3DC2DH2D112.4°110.5°
C2DC3DC4D97.5°104.0°
C2DC3DO3D106.2°110.5°
C2DC3DH3D122.4°110.5°
C2EC3EH3E120.0°120.0°
C2EC3EH3EA120.0°120.0°
N3UC2UO2U118.0°119.5°
C2UN3UC4U126.3°120.3°
C2UN3UHN3U116.9°119.9°
C4DC3DO3D118.9°110.5°
C4DC3DH3D110.5°110.5°
C3DC4DC5D117.0°110.4°
C3DC4DO4D104.9°104.8°
C3DC4DH4D106.3°110.4°
O3DC3DH3D102.5°110.6°
C3DO3DHO3D109.5°114.0°
H3EC3EH3EA120.0°120.0°
N3UC4UC5U115.3°119.4°
N3UC4UO4U121.1°120.3°
C4UN3UHN3U116.8°119.9°
C5DC4DO4D104.8°110.4°
C5DC4DH4D106.3°110.4°
C4DC5DO5D113.2°109.5°
C4DC5DH5D108.3°109.4°
C4DC5DH5DA108.2°109.5°
O4DC4DH4D118.2°110.4°
C5UC4UO4U123.5°120.3°
C4UC5UC6U120.0°119.1°
C4UC5UH5U120.0°120.4°
O5DC5DH5D108.2°109.5°
O5DC5DH5DA108.2°109.5°
H5DC5DH5DA110.7°109.4°
C6UC5UH5U120.0°120.5°
C5UC6UH6U119.9°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1O5113.9°119.9°
C2C1O1H1123.7°120.0°
C2C1O5H1123.6°119.9°
C2C1O1PB178.9°150.0°
C1C2N2C3124.2°119.7°
C1C2N2H2119.1°120.2°
C1C2C3H2118.9°119.9°
C1C2N2C774.3°85.0°
C1C2N2HN2105.7°95.0°
C1C2C3O3178.6°176.9°
C1C2C3C458.7°57.0°
C1C2C3H359.8°62.9°
C2C1O5C551.5°61.2°
O1C1O5H1121.4°120.1°
O1C1C2N261.3°57.5°
O1C1C2C362.4°62.4°
O1C1C2H2179.0°177.7°
O1C1O5C563.5°58.8°
C1O1PBO2B179.9°55.0°
C1O1PBO1B61.6°65.1°
C1O1PBO3A57.1°175.0°
O5C1O1PB67.3°90.1°
O5C1C2N2178.2°177.5°
O5C1C2C354.4°57.6°
O5C1C2H262.2°62.3°
C1O5C5C448.2°61.2°
C1O5C5C6170.0°178.9°
C1O5C5H567.9°58.8°
H1C1O1PB55.1°30.0°
H1C1C2N259.8°62.5°
H1C1C2C3176.4°177.6°
H1C1C2H259.8°57.7°
H1C1O5C5175.1°178.9°
O1PBO3APA179.6°160.0°
O1PBO2BO1B112.3°120.0°
O1PBO2BO3A120.2°120.0°
O1PBO1BO3A116.5°120.0°
O1PBO1BHO1B115.5°60.0°
N2C2C3H2119.4°120.2°
C2N2C7HN2180.0°180.0°
N2C2C3O359.7°63.2°
N2C2C3C4179.7°176.9°
N2C2C3H361.9°57.0°
C2N2C7C8179.7°180.0°
C2N2C7O70.2°0.0°
C3C2N2C7161.5°155.3°
C3C2N2HN218.5°24.7°
C2C3O3C4122.1°119.6°
C2C3O3H3119.4°120.2°
C2C3C4H3119.4°119.9°
C2C3O3C2E121.7°156.0°
C2C3C4O468.6°62.9°
C2C3C4C549.3°57.0°
C2C3C4H4169.7°176.9°
H2C2N2C744.8°35.2°
H2C2N2HN2135.2°144.8°
H2C2C3O359.7°57.0°
H2C2C3C460.2°62.9°
H2C2C3H3178.7°177.2°
N2C7C8O7179.9°180.0°
N2C7C8H8179.9°0.0°
N2C7C8H8A60.2°120.0°
N2C7C8H8B59.9°120.0°
HN2N2C7C80.3°0.0°
HN2N2C7O7179.8°180.0°
O3C3C4H3121.6°120.2°
O3C3C4O450.4°57.0°
O3C3C4C5168.2°176.9°
O3C3C4H471.3°63.2°
C3O3C2EC1E129.9°174.5°
C3O3C2EC3E52.1°5.5°
C4C3O3C2E116.2°84.4°
C3C4O4C5117.2°119.7°
C3C4O4H4122.2°120.2°
C3C4C5H4122.4°120.0°
C3C4O4HO4180.0°180.0°
C3C4C5O541.9°57.6°
C3C4C5C6160.9°177.6°
C3C4C5H577.2°62.4°
H3C3O3C2E2.3°35.7°
H3C3C4O4172.0°177.2°
H3C3C4C570.1°62.9°
H3C3C4H450.3°57.0°
O3C2EC1EO2E122.5°0.0°
O3C2EC1EO1E57.4°180.0°
O3C2EC1EC3E178.2°180.0°
O3C2EC3EH3E177.8°5.7°
O3C2EC3EH3EA2.2°174.3°
O4C4C5H4121.9°120.1°
O4C4C5O573.9°62.3°
O4C4C5C645.1°57.7°
O4C4C5H5167.0°177.7°
C5C4O4HO462.7°60.4°
C4C5O5C6121.8°120.0°
C4C5O5H5116.1°120.0°
C4C5C6H5116.3°120.0°
C4C5C6O6156.8°175.0°
C4C5C6H636.8°55.0°
C4C5C6H6A83.2°65.0°
H4C4O4HO457.8°59.8°
H4C4C5O5164.2°177.6°
H4C4C5C676.8°62.4°
H4C4C5H545.1°57.6°
O5C5C6H5119.4°120.1°
O5C5C6O678.9°65.1°
O5C5C6H6161.1°174.9°
O5C5C6H6A41.1°54.9°
C5C6O6H6120.0°120.0°
C5C6O6H6A120.0°120.0°
C5C6H6H6A123.5°120.1°
C5C6O6HO6180.0°180.0°
H5C5C6O640.5°55.0°
H5C5C6H679.5°64.9°
H5C5C6H6A160.5°175.0°
O6C6H6H6A123.5°119.9°
H6C6O6HO660.0°59.9°
H6AC6O6HO660.0°60.0°
C7C8H8H8A120.0°120.0°
C7C8H8H8B120.0°120.0°
C7C8H8AH8B120.0°120.0°
O7C7C8H80.0°180.0°
O7C7C8H8A120.0°60.0°
O7C7C8H8B120.0°60.0°
H8C8H8AH8B120.0°119.9°
O3APAO1AO5D130.9°120.0°
O3APAO1AO2A109.6°120.0°
O3APAO5DO2A109.4°120.0°
PAO3APBO2B60.7°40.0°
PAO3APBO1B66.9°80.0°
O3APAO2AHO2A119.9°60.0°
O3APAO5DC5D109.3°175.0°
O1APAO5DO2A119.5°120.0°
O1APAO3APB20.4°45.0°
O1APAO2AHO2A0.0°180.0°
O1APAO5DC5D119.6°55.1°
O5DPAO3APB108.6°165.0°
O5DPAO2AHO2A120.5°60.0°
PAO5DC5DC4D153.6°180.0°
PAO5DC5DH5D33.6°60.0°
PAO5DC5DH5DA86.4°60.0°
O2APAO3APB136.0°75.0°
O2APAO5DC5D0.1°64.9°
O2BPBO1BO3A128.0°120.0°
O2BPBO1BHO1B0.0°180.0°
O3APBO1BHO1B128.0°60.0°
C2DC1DN1UO4D116.1°115.5°
C2DC1DN1UH1D118.6°122.3°
C2DC1DO4DH1D118.5°118.9°
C2DC1DN1UC6U65.5°62.2°
C2DC1DN1UC2U115.0°118.1°
C1DC2DO2DC3D122.3°114.6°
C1DC2DO2DH2D120.2°122.7°
C1DC2DC3DH2D122.9°118.7°
C1DC2DO2DHO2D180.0°180.0°
C1DC2DC3DC4D44.1°0.0°
C1DC2DC3DO3D78.9°118.6°
C1DC2DC3DH3D164.3°118.6°
C2DC1DO4DC4D29.5°40.5°
N1UC1DO4DH1D116.8°122.2°
C1DN1UC6UC2U179.5°179.7°
N1UC1DC2DO2D63.1°98.5°
N1UC1DC2DC3D164.7°142.9°
N1UC1DC2DH2D44.0°24.2°
C1DN1UC2UN3U179.7°180.0°
C1DN1UC2UO2U0.2°0.0°
N1UC1DO4DC4D154.2°159.4°
C1DN1UC6UC5U179.5°179.8°
C1DN1UC6UH6U0.5°0.3°
O4DC1DN1UC6U50.6°53.3°
O4DC1DN1UC2U128.8°126.4°
O4DC1DC2DO2D179.1°142.6°
O4DC1DC2DC3D46.9°24.0°
O4DC1DC2DH2D73.9°94.7°
C1DO4DC4DC3D0.3°40.5°
C1DO4DC4DC5D123.5°159.4°
C1DO4DC4DH4D118.4°78.4°
H1DC1DN1UC6U175.9°175.5°
H1DC1DN1UC2U3.6°4.2°
H1DC1DC2DO2D53.8°23.8°
H1DC1DC2DC3D78.3°94.9°
H1DC1DC2DH2D160.9°146.4°
H1DC1DO4DC4D89.0°78.4°
O2EC1EO1EC2E179.9°180.0°
O2EC1EO1EHO1E0.0°0.0°
O2EC1EC2EC3E59.3°180.0°
O1EC1EC2EC3E120.8°0.0°
C2EC1EO1EHO1E179.9°180.0°
C1EC2EC3EH3E0.0°174.3°
C1EC2EC3EH3EA180.0°5.7°
C6UN1UC2UN3U0.2°0.3°
C6UN1UC2UO2U179.7°179.7°
N1UC6UC5UC4U0.2°0.5°
N1UC6UC5UH6U180.0°179.5°
N1UC6UC5UH5U179.8°179.7°
N1UC2UN3UO2U179.9°180.0°
N1UC2UN3UC4U0.2°0.0°
C2UN1UC6UC5U0.0°0.5°
C2UN1UC6UH6U180.0°180.0°
N1UC2UN3UHN3U179.8°180.0°
O2DC2DC3DH2D106.6°122.7°
O2DC2DC3DC4D174.7°118.7°
O2DC2DC3DO3D51.6°0.0°
O2DC2DC3DH3D65.2°122.7°
C3DC2DO2DHO2D57.7°65.3°
C2DC3DC4DO3D113.2°118.7°
C2DC3DC4DH3D128.8°118.6°
C2DC3DO3DH3D129.5°122.7°
C2DC3DO3DHO3D180.0°61.5°
C2DC3DC4DC5D87.7°142.8°
C2DC3DC4DO4D28.0°23.9°
C2DC3DC4DH4D153.9°94.9°
H2DC2DO2DHO2D59.9°57.3°
H2DC2DC3DC4D78.8°118.7°
H2DC2DC3DO3D158.2°122.7°
H2DC2DC3DH3D41.4°0.1°
C2EC3EH3EH3EA180.0°180.0°
C2UN3UC4UHN3U180.0°180.0°
C2UN3UC4UC5U0.1°0.0°
C2UN3UC4UO4U180.0°180.0°
O2UC2UN3UC4U179.7°180.0°
O2UC2UN3UHN3U0.3°0.0°
C4DC3DO3DH3D122.2°122.6°
C4DC3DO3DHO3D71.6°176.1°
C3DC4DC5DO4D115.7°115.4°
C3DC4DC5DH4D118.5°122.3°
C3DC4DO4DH4D118.1°118.8°
C3DC4DC5DO5D60.8°175.0°
C3DC4DC5DH5D179.2°54.9°
C3DC4DC5DH5DA59.1°65.0°
O3DC3DC4DC5D159.2°98.5°
O3DC3DC4DO4D85.2°142.6°
O3DC3DC4DH4D40.7°23.8°
H3DC3DO3DHO3D50.5°61.3°
H3DC3DC4DC5D41.1°24.2°
H3DC3DC4DO4D156.7°94.7°
H3DC3DC4DH4D77.4°146.5°
N3UC4UC5UO4U180.0°179.9°
N3UC4UC5UC6U0.2°0.2°
N3UC4UC5UH5U179.8°180.0°
C5DC4DO4DH4D118.1°122.3°
C4DC5DO5DH5D120.0°120.0°
C4DC5DO5DH5DA120.0°120.0°
C4DC5DH5DH5DA118.5°120.0°
O4DC4DC5DO5D54.8°69.6°
O4DC4DC5DH5D65.2°170.4°
O4DC4DC5DH5DA174.8°50.4°
H4DC4DC5DO5D179.3°52.7°
H4DC4DC5DH5D60.7°67.3°
H4DC4DC5DH5DA59.3°172.7°
C4UC5UC6UH5U180.0°179.8°
C4UC5UC6UH6U179.8°180.0°
C5UC4UN3UHN3U179.9°180.0°
O4UC4UC5UC6U179.8°179.7°
O4UC4UC5UH5U0.2°0.1°
O4UC4UN3UHN3U0.0°0.1°
O5DC5DH5DH5DA118.5°120.0°
H5UC5UC6UH6U0.2°0.2°

220113

PDB entries from 2024-05-22

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