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UPM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.35Å1.40ÅAromatic
N1C6sing1.37Å1.49ÅAromatic
N1C1'sing1.46Å1.50Å
C2N3sing1.35Å1.36ÅAromatic
C2O2doub1.22Å1.23Å
N3C4sing1.35Å1.35ÅAromatic
N3HN3sing0.97Å1.00Å
C4C5sing1.42Å1.55ÅAromatic
C4O4doub1.22Å1.23Å
C5C6doub1.35Å1.35ÅAromatic
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
PAO1Adoub1.48Å1.61Å
PAO2Asing1.61Å1.61Å
PAO3Asing1.61Å1.59Å
PAO5'sing1.61Å1.61Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.58Å
PBO1Bdoub1.48Å1.60Å
PBO2Bsing1.61Å1.61Å
PBO1Dsing1.61Å1.59Å
O2BHOB2sing0.97Å0.95Å
C1'C2'sing1.55Å1.54Å
C1'O4'sing1.44Å1.45Å
C1'H1'sing1.09Å1.10Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.10Å
O2'HO'2sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.54Å
C3'H3'sing1.09Å1.10Å
O3'HO'3sing0.97Å0.95Å
C4'O4'sing1.43Å1.45Å
C4'C5'sing1.53Å1.55Å
C4'H4'sing1.09Å1.10Å
C5'O5'sing1.43Å1.45Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C18C19sing1.51Å1.55Å
C18C20sing1.53Å1.53Å
C18O3Dsing1.43Å1.46Å
C18H18sing1.09Å1.10Å
C19O18doub1.21Å1.25Å
C19O1sing1.34Å1.25Å
C20H201sing1.09Å1.10Å
C20H202sing1.09Å1.10Å
C20H203sing1.09Å1.10Å
C1DO1Dsing1.43Å1.44Å
C1DC2Dsing1.53Å1.56Å
C1DO5Dsing1.43Å1.45Å
C1DH1Dsing1.09Å1.10Å
C2DN2Dsing1.47Å1.49Å
C2DC3Dsing1.53Å1.56Å
C2DH2Dsing1.09Å1.10Å
N2DC7Dsing1.35Å1.33Å
N2DHND2sing0.97Å1.00Å
C7DO7Ddoub1.21Å1.23Å
C7DC8Dsing1.51Å1.51Å
C8DOXTsing1.43Å23.14Å
C8DH8D1sing1.09Å1.10Å
C8DH8D2sing1.09Å1.10Å
C3DO3Dsing1.43Å1.46Å
C3DC4Dsing1.53Å1.56Å
C3DH3Dsing1.09Å1.10Å
C4DO4Dsing1.43Å1.43Å
C4DC5Dsing1.53Å1.56Å
C4DH4Dsing1.09Å1.10Å
O4DHOD4sing0.97Å0.95Å
C5DO5Dsing1.43Å1.46Å
C5DC6Dsing1.53Å1.54Å
C5DH5Dsing1.09Å1.10Å
C6DO6Dsing1.43Å1.43Å
C6DH6D1sing1.09Å1.10Å
C6DH6D2sing1.09Å1.10Å
O6DHOD6sing0.97Å0.95Å
O1HO1sing0.97Å0.95Å
OXTHXTsing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6119.1°120.6°
C2N1C1'120.1°119.7°
N1C2N3120.9°120.9°
N1C2O2121.9°119.5°
C6N1C1'120.8°119.7°
N1C6C5119.6°119.7°
N1C6H6120.2°120.1°
N1C1'C2'113.7°110.3°
N1C1'O4'113.6°110.3°
N1C1'H1'102.0°110.4°
N3C2O2117.2°119.6°
C2N3C4124.2°120.3°
C2N3HN3117.9°119.8°
C4N3HN3117.9°119.9°
N3C4C5117.3°119.4°
N3C4O4120.1°120.3°
C5C4O4122.6°120.3°
C4C5C6118.9°119.1°
C4C5H5120.6°120.5°
C6C5H5120.5°120.4°
C5C6H6120.2°120.2°
O1APAO2A109.4°109.4°
O1APAO3A109.6°109.5°
O1APAO5'110.8°109.5°
O2APAO3A109.4°109.5°
O2APAO5'108.6°109.5°
PAO2AHOA2109.5°106.8°
O3APAO5'109.1°109.5°
PAO3APB115.3°106.8°
PAO5'C5'122.6°106.8°
O3APBO1B109.7°109.5°
O3APBO2B111.4°109.5°
O3APBO1D106.7°109.5°
O1BPBO2B108.6°109.5°
O1BPBO1D109.8°109.5°
O2BPBO1D110.7°109.5°
PBO2BHOB2109.5°106.8°
PBO1DC1D125.1°106.8°
C2'C1'O4'104.7°105.1°
C2'C1'H1'111.4°110.3°
C1'C2'O2'112.0°111.1°
C1'C2'C3'104.3°101.0°
C1'C2'H2'112.3°111.2°
O4'C1'H1'111.6°110.3°
C1'O4'C4'110.6°110.0°
O2'C2'C3'112.5°111.1°
O2'C2'H2'104.1°111.0°
C2'O2'HO'2109.5°106.8°
C3'C2'H2'111.9°111.1°
C2'C3'O3'108.3°110.9°
C2'C3'C4'102.1°102.3°
C2'C3'H3'115.5°110.9°
O3'C3'C4'111.4°110.8°
O3'C3'H3'106.8°110.9°
C3'O3'HO'3109.5°106.8°
C4'C3'H3'112.6°110.8°
C3'C4'O4'106.8°107.6°
C3'C4'C5'115.1°109.8°
C3'C4'H4'107.6°109.9°
O4'C4'C5'109.8°109.9°
O4'C4'H4'113.2°109.9°
C5'C4'H4'104.5°109.8°
C4'C5'O5'112.3°109.5°
C4'C5'H5'1108.5°109.4°
C4'C5'H5'2107.9°109.5°
O5'C5'H5'1108.6°109.5°
O5'C5'H5'2107.9°109.5°
H5'1C5'H5'2111.7°109.5°
C19C18C20113.1°109.4°
C19C18O3D111.8°109.5°
C19C18H18104.6°109.5°
C18C19O18119.3°120.0°
C18C19O1120.1°120.0°
C20C18O3D107.2°109.5°
C20C18H18109.4°109.5°
C18C20H201109.5°109.5°
C18C20H202109.5°109.4°
C18C20H203109.5°109.5°
O3DC18H18110.8°109.5°
C18O3DC3D120.6°106.8°
O18C19O1120.6°120.0°
C19O1HO1109.5°120.0°
H201C20H202109.5°109.5°
H201C20H203109.4°109.5°
H202C20H203109.5°109.5°
O1DC1DC2D110.7°109.4°
O1DC1DO5D108.9°109.4°
O1DC1DH1D109.1°109.4°
C2DC1DO5D109.7°109.8°
C2DC1DH1D108.3°109.4°
C1DC2DN2D110.1°109.5°
C1DC2DC3D110.1°109.0°
C1DC2DH2D109.4°109.6°
O5DC1DH1D110.1°109.4°
C1DO5DC5D116.6°107.6°
N2DC2DC3D111.6°109.5°
N2DC2DH2D107.9°109.6°
C2DN2DC7D123.3°120.0°
C2DN2DHND2118.4°120.0°
C3DC2DH2D107.8°109.6°
C2DC3DO3D111.6°109.6°
C2DC3DC4D112.0°108.7°
C2DC3DH3D105.1°109.7°
C7DN2DHND2118.4°120.0°
N2DC7DO7D124.7°120.0°
N2DC7DC8D113.9°120.0°
O7DC7DC8D121.4°120.0°
C7DC8DOXT29.8°109.5°
C7DC8DH8D1151.9°109.5°
C7DC8DH8D2153.8°109.5°
OXTC8DH8D1152.0°109.5°
OXTC8DH8D2153.8°109.4°
C8DOXTHXT90.0°106.8°
H8D1C8DH8D245.8°109.5°
O3DC3DC4D105.6°109.6°
O3DC3DH3D111.6°109.7°
C4DC3DH3D111.1°109.6°
C3DC4DO4D109.0°109.6°
C3DC4DC5D115.2°109.0°
C3DC4DH4D105.5°109.5°
O4DC4DC5D108.3°109.6°
O4DC4DH4D112.8°109.6°
C4DO4DHOD4109.5°106.8°
C5DC4DH4D106.2°109.6°
C4DC5DO5D112.9°109.8°
C4DC5DC6D111.9°109.4°
C4DC5DH5D104.7°109.5°
O5DC5DC6D107.5°109.4°
O5DC5DH5D109.4°109.4°
C6DC5DH5D110.4°109.4°
C5DC6DO6D112.9°109.5°
C5DC6DH6D1108.4°109.5°
C5DC6DH6D2107.6°109.5°
O6DC6DH6D1108.3°109.5°
O6DC6DH6D2107.6°109.5°
C6DO6DHOD6109.5°106.8°
H6D1C6DH6D2112.2°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1'178.7°179.7°
N1C2N3O2178.9°179.4°
N1C2N3C40.4°0.5°
N1C2N3HN3179.6°179.7°
C2N1C6C50.5°0.3°
C2N1C6H6179.5°179.8°
C2N1C1'C2'61.1°63.2°
C2N1C1'O4'179.2°178.9°
C2N1C1'H1'59.0°59.0°
C6N1C2N30.3°0.6°
C6N1C2O2179.2°180.0°
N1C6C5C41.1°0.1°
N1C6C5H6180.0°179.9°
N1C6C5H5178.9°180.0°
C6N1C1'C2'120.2°117.2°
C6N1C1'O4'0.6°1.5°
C6N1C1'H1'119.7°120.6°
C1'N1C2N3179.0°179.8°
C1'N1C2O22.1°0.3°
C1'N1C6C5178.2°180.0°
C1'N1C6H61.8°0.1°
N1C1'C2'O4'124.6°118.9°
N1C1'C2'H1'114.7°122.2°
N1C1'O4'H1'114.7°122.2°
N1C1'C2'O2'84.1°86.8°
N1C1'C2'C3'153.9°155.3°
N1C1'C2'H2'32.6°37.4°
N1C1'O4'C4'137.4°143.3°
C2N3C4HN3180.0°179.7°
C2N3C4C50.3°0.3°
C2N3C4O4180.0°179.7°
O2C2N3C4179.3°180.0°
O2C2N3HN30.7°0.3°
N3C4C5O4179.7°180.0°
N3C4C5C61.0°0.1°
N3C4C5H5179.0°180.0°
HN3N3C4C5179.7°180.0°
HN3N3C4O40.0°0.0°
C4C5C6H5180.0°179.9°
C4C5C6H6178.9°179.9°
O4C4C5C6179.3°180.0°
O4C4C5H50.7°0.0°
H5C5C6H61.1°0.1°
O1APAO2AO3A120.0°120.0°
O1APAO2AO5'121.0°120.0°
O1APAO3AO5'121.5°120.0°
O1APAO2AHOA212.4°180.0°
O1APAO3APB77.8°45.0°
O1APAO5'C5'176.1°54.9°
O2APAO3AO5'118.7°120.0°
O2APAO3APB42.0°75.0°
O2APAO5'C5'55.9°65.0°
O3APAO2AHOA2132.3°60.0°
PAO3APBO1B76.5°40.0°
PAO3APBO2B43.8°80.0°
PAO3APBO1D164.6°160.0°
O3APAO5'C5'63.2°175.0°
O5'PAO2AHOA2108.6°60.0°
O5'PAO3APB160.7°165.0°
PAO5'C5'C4'163.5°180.0°
PAO5'C5'H5'143.5°60.0°
PAO5'C5'H5'277.7°59.9°
O3APBO1BO2B122.0°120.0°
O3APBO1BO1D116.9°120.0°
O3APBO2BO1D118.5°120.0°
O3APBO2BHOB241.4°60.0°
O3APBO1DC1D131.4°175.0°
O1BPBO2BO1D120.6°120.0°
O1BPBO2BHOB2162.3°180.0°
O1BPBO1DC1D109.8°55.0°
O2BPBO1DC1D10.0°65.0°
O1DPBO2BHOB277.1°60.0°
PBO1DC1DC2D149.3°149.7°
PBO1DC1DO5D90.0°90.0°
PBO1DC1DH1D30.3°29.8°
C2'C1'O4'H1'120.6°118.9°
C1'C2'O2'C3'117.1°111.6°
C1'C2'O2'H2'121.6°124.2°
C1'C2'C3'H2'121.6°118.0°
C1'C2'O2'HO'2116.2°180.0°
C1'C2'C3'O3'84.1°84.1°
C1'C2'C3'C4'33.6°34.1°
C1'C2'C3'H3'156.2°152.3°
C2'C1'O4'C4'12.8°24.4°
O4'C1'C2'O2'151.3°154.4°
O4'C1'C2'C3'29.3°36.5°
O4'C1'C2'H2'92.0°81.5°
C1'O4'C4'C3'8.7°1.7°
C1'O4'C4'C5'116.8°117.8°
C1'O4'C4'H4'126.9°121.3°
H1'C1'C2'O2'30.5°35.4°
H1'C1'C2'C3'91.4°82.5°
H1'C1'C2'H2'147.3°159.6°
H1'C1'O4'C4'107.8°94.5°
O2'C2'C3'H2'116.8°124.1°
O2'C2'C3'O3'37.5°33.9°
O2'C2'C3'C4'155.2°152.1°
O2'C2'C3'H3'82.2°89.8°
C3'C2'O2'HO'20.8°68.4°
C2'C3'O3'C4'111.5°112.9°
C2'C3'O3'H3'125.1°123.6°
C2'C3'C4'H3'124.5°118.2°
C2'C3'O3'HO'3142.7°61.4°
C2'C3'C4'O4'26.5°21.3°
C2'C3'C4'C5'95.6°140.9°
C2'C3'C4'H4'148.3°98.2°
H2'C2'O2'HO'2122.2°55.8°
H2'C2'C3'O3'154.3°158.0°
H2'C2'C3'C4'88.0°83.8°
H2'C2'C3'H3'34.5°34.4°
O3'C3'C4'H3'120.0°123.6°
O3'C3'C4'O4'88.9°96.9°
O3'C3'C4'C5'148.9°22.6°
O3'C3'C4'H4'32.9°143.6°
C4'C3'O3'HO'331.1°174.2°
C3'C4'O4'C5'125.5°119.5°
C3'C4'O4'H4'118.2°119.5°
C3'C4'C5'H4'117.8°120.9°
C3'C4'C5'O5'63.4°175.4°
C3'C4'C5'H5'1176.6°64.6°
C3'C4'C5'H5'255.4°55.4°
H3'C3'O3'HO'392.2°62.2°
H3'C3'C4'O4'151.1°139.5°
H3'C3'C4'C5'28.9°100.9°
H3'C3'C4'H4'87.1°20.0°
O4'C4'C5'H4'121.7°121.0°
O4'C4'C5'O5'57.2°66.4°
O4'C4'C5'H5'162.9°53.5°
O4'C4'C5'H5'2175.9°173.5°
C4'C5'O5'H5'1120.0°119.9°
C4'C5'O5'H5'2118.8°120.1°
C4'C5'H5'1H5'2118.8°120.0°
H4'C4'C5'O5'178.8°54.5°
H4'C4'C5'H5'158.8°174.5°
H4'C4'C5'H5'262.4°65.5°
O5'C5'H5'1H5'2118.9°120.0°
C19C18C20O3D123.6°120.0°
C19C18C20H18116.2°120.0°
C19C18O3DH18116.2°120.1°
C18C19O18O1178.7°179.9°
C19C18C20H201136.6°175.4°
C19C18C20H202103.4°64.5°
C19C18C20H20316.6°55.4°
C19C18O3DC3D126.7°90.2°
C18C19O1HO1178.7°179.9°
C20C18O3DH18119.3°120.0°
C20C18C19O1868.7°115.0°
C20C18C19O1112.6°65.1°
C18C20H201H202120.0°120.0°
C18C20H201H203120.0°120.0°
C18C20H202H203120.0°120.0°
C20C18O3DC3D108.8°149.9°
O3DC18C19O18170.2°4.9°
O3DC18C19O18.5°175.0°
O3DC18C20H20113.0°55.5°
O3DC18C20H202133.0°175.5°
O3DC18C20H203107.0°64.5°
C18O3DC3DC2D84.2°151.7°
C18O3DC3DC4D153.9°89.1°
C18O3DC3DH3D33.1°31.2°
H18C18C19O1850.3°125.0°
H18C18C19O1128.4°54.9°
H18C18C20H201107.2°64.5°
H18C18C20H20212.8°55.5°
H18C18C20H203132.8°175.5°
H18C18O3DC3D10.5°29.9°
O18C19O1HO10.0°0.0°
H201C20H202H203120.0°120.1°
O1DC1DC2DO5D120.2°120.1°
O1DC1DC2DH1D119.6°119.9°
O1DC1DO5DH1D119.6°119.9°
O1DC1DC2DN2D62.0°61.5°
O1DC1DC2DC3D61.4°178.6°
O1DC1DC2DH2D179.7°58.8°
O1DC1DO5DC5D60.6°172.3°
C2DC1DO5DH1D119.1°120.0°
C1DC2DN2DC3D122.6°119.5°
C1DC2DN2DH2D119.3°120.2°
C1DC2DC3DH2D119.2°119.9°
C1DC2DN2DC7D115.1°85.1°
C1DC2DN2DHND264.9°95.0°
C1DC2DC3DO3D167.9°173.4°
C1DC2DC3DC4D49.8°53.7°
C1DC2DC3DH3D71.0°66.1°
C2DC1DO5DC5D60.7°67.6°
O5DC1DC2DN2D177.8°58.6°
O5DC1DC2DC3D58.8°61.3°
O5DC1DC2DH2D59.4°178.9°
C1DO5DC5DC4D50.1°67.6°
C1DO5DC5DC6D174.1°172.3°
C1DO5DC5DH5D66.0°52.5°
H1DC1DC2DN2D57.5°178.6°
H1DC1DC2DC3D179.0°58.8°
H1DC1DC2DH2D60.8°61.1°
H1DC1DO5DC5D179.8°52.4°
N2DC2DC3DH2D118.2°120.3°
C2DN2DC7DHND2180.0°179.9°
C2DN2DC7DO7D11.9°0.1°
C2DN2DC7DC8D168.7°180.0°
N2DC2DC3DO3D69.5°53.6°
N2DC2DC3DC4D172.3°66.1°
N2DC2DC3DH3D51.6°174.1°
C3DC2DN2DC7D122.3°155.4°
C3DC2DN2DHND257.7°24.5°
C2DC3DO3DC4D121.9°119.2°
C2DC3DO3DH3D117.3°120.5°
C2DC3DC4DH3D117.2°119.9°
C2DC3DC4DO4D162.5°66.2°
C2DC3DC4DC5D40.6°53.7°
C2DC3DC4DH4D76.2°173.6°
H2DC2DN2DC7D4.1°35.2°
H2DC2DN2DHND2175.9°144.7°
H2DC2DC3DO3D48.7°66.7°
H2DC2DC3DC4D69.5°173.6°
H2DC2DC3DH3D169.8°53.8°
N2DC7DO7DC8D179.4°179.9°
N2DC7DC8DOXT70.1°179.9°
N2DC7DC8DH8D149.9°60.0°
N2DC7DC8DH8D2167.1°60.1°
HND2N2DC7DO7D168.1°180.0°
HND2N2DC7DC8D11.3°0.1°
O7DC7DC8DOXT110.4°0.1°
O7DC7DC8DH8D1129.5°119.9°
O7DC7DC8DH8D212.3°120.1°
C7DC8DOXTH8D1120.0°120.0°
C7DC8DOXTH8D2122.8°120.0°
C7DC8DH8D1H8D2146.8°120.0°
C7DC8DOXTHXT90.0°180.0°
OXTC8DH8D1H8D2146.8°120.0°
H8D1C8DOXTHXT90.0°60.0°
H8D2C8DOXTHXT90.0°59.9°
O3DC3DC4DH3D121.1°120.4°
O3DC3DC4DO4D75.9°53.6°
O3DC3DC4DC5D162.2°173.5°
O3DC3DC4DH4D45.5°66.6°
C3DC4DO4DC5D126.0°119.5°
C3DC4DO4DH4D116.8°120.2°
C3DC4DC5DH4D116.4°119.9°
C3DC4DO4DHOD4157.8°180.0°
C3DC4DC5DO5D38.9°61.3°
C3DC4DC5DC6D160.4°178.7°
C3DC4DC5DH5D79.9°58.8°
H3DC3DC4DO4D45.2°174.0°
H3DC3DC4DC5D76.6°66.2°
H3DC3DC4DH4D166.6°53.8°
O4DC4DC5DH4D121.4°120.3°
O4DC4DC5DO5D161.2°58.6°
O4DC4DC5DC6D77.3°61.5°
O4DC4DC5DH5D42.3°178.7°
C5DC4DO4DHOD431.8°60.5°
C4DC5DO5DC6D124.0°120.1°
C4DC5DO5DH5D116.2°120.1°
C4DC5DC6DH5D116.2°119.9°
C4DC5DC6DO6D71.6°175.0°
C4DC5DC6DH6D1168.4°55.0°
C4DC5DC6DH6D246.9°65.0°
H4DC4DO4DHOD485.4°59.9°
H4DC4DC5DO5D77.4°178.9°
H4DC4DC5DC6D44.1°58.8°
H4DC4DC5DH5D163.7°61.1°
O5DC5DC6DH5D119.2°119.8°
O5DC5DC6DO6D52.9°64.7°
O5DC5DC6DH6D167.1°175.3°
O5DC5DC6DH6D2171.4°55.3°
C5DC6DO6DH6D1120.0°120.0°
C5DC6DO6DH6D2118.5°120.0°
C5DC6DH6D1H6D2118.6°120.0°
C5DC6DO6DHOD619.6°180.0°
H5DC5DC6DO6D172.1°55.1°
H5DC5DC6DH6D152.1°64.9°
H5DC5DC6DH6D269.3°175.1°
O6DC6DH6D1H6D2118.6°119.9°
H6D1C6DO6DHOD6100.5°59.9°
H6D2C6DO6DHOD6138.1°60.0°

223532

PDB entries from 2024-08-07

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