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UPF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.34Å1.41Å
N1C6sing1.37Å1.46Å
N1C1Dsing1.46Å1.53Å
C2N3sing1.35Å1.41Å
C2O2doub1.22Å1.23Å
N3C4sing1.35Å1.44Å
N3HN3sing0.97Å1.02Å
C4C5sing1.42Å1.43Å
C4O4doub1.22Å1.22Å
C5C6doub1.35Å1.33Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
C1DC2Dsing1.55Å1.51Å
C1DO4Dsing1.44Å1.41Å
C1DH1Dsing1.09Å1.12Å
C2DO2'sing1.43Å1.42Å
C2DC3Dsing1.55Å1.52Å
C2DH2Dsing1.09Å1.11Å
O2'HO2'sing0.97Å0.95Å
C3DC4Dsing1.54Å1.53Å
C3DO3Dsing1.43Å1.41Å
C3DH3Dsing1.09Å1.11Å
C4DO4Dsing1.44Å1.50Å
C4DC5Dsing1.53Å1.50Å
C4DH4Dsing1.09Å1.11Å
O3DHO3'sing0.97Å0.95Å
C5DO5Dsing1.43Å1.49Å
C5DH5'1sing1.09Å1.12Å
C5DH5'2sing1.09Å1.11Å
O5DPAsing1.61Å1.61Å
PAO1Adoub1.48Å1.47Å
PAO2Asing1.61Å1.49Å
PAO3Asing1.61Å1.60Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.59Å
PBO1Bdoub1.48Å1.48Å
PBO2Bsing1.61Å1.48Å
PBO3Bsing1.61Å1.54Å
O2BHOB2sing0.97Å0.95Å
O3BC1'sing1.43Å1.60Å
C1'C2'sing1.53Å1.54Å
C1'O5'sing1.43Å1.44Å
C1'H1'sing1.09Å1.11Å
C2'C3'sing1.53Å1.61Å
C2'F2'sing1.40Å1.41Å
C2'H2'sing1.09Å1.11Å
C3'C4'sing1.53Å1.58Å
C3'O3'sing1.43Å1.40Å
C3'H3'sing1.09Å1.11Å
C4'C5'sing1.53Å1.61Å
C4'O4'sing1.43Å1.45Å
C4'H4'sing1.09Å1.12Å
C5'C6'sing1.53Å1.54Å
C5'O5'sing1.43Å1.51Å
C5'H5'sing1.09Å1.12Å
C6'O6'sing1.43Å1.40Å
C6'H6'1sing1.09Å1.11Å
C6'H6'2sing1.09Å1.12Å
O3'HO3Asing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6122.0°120.6°
C2N1C1D128.0°119.7°
N1C2N3112.5°120.9°
N1C2O2123.4°119.5°
C6N1C1D110.0°119.7°
N1C6C5123.3°119.7°
N1C6H6123.1°120.2°
N1C1DC2D107.9°110.8°
N1C1DO4D125.3°110.6°
N1C1DH1D98.0°110.5°
N3C2O2124.1°119.5°
C2N3C4127.2°120.3°
C2N3HN3114.9°119.8°
C4N3HN3117.9°119.9°
N3C4C5116.5°119.4°
N3C4O4119.2°120.3°
C5C4O4124.4°120.3°
C4C5C6118.5°119.1°
C4C5H5124.2°120.4°
C6C5H5117.3°120.5°
C5C6H6113.7°120.1°
C2DC1DO4D105.9°103.5°
C2DC1DH1D120.5°110.6°
C1DC2DO2'110.3°111.0°
C1DC2DC3D104.0°102.1°
C1DC2DH2D113.7°110.9°
O4DC1DH1D100.4°110.6°
C1DO4DC4D110.1°107.0°
O2'C2DC3D113.0°110.9°
O2'C2DH2D105.0°110.8°
C2DO2'HO2'110.2°106.7°
C3DC2DH2D111.1°110.9°
C2DC3DC4D100.2°104.0°
C2DC3DO3D119.2°110.5°
C2DC3DH3D109.8°110.5°
C4DC3DO3D110.6°110.8°
C4DC3DH3D118.6°110.5°
C3DC4DO4D102.6°107.4°
C3DC4DC5D128.8°109.9°
C3DC4DH4D97.2°109.9°
O3DC3DH3D99.4°110.4°
C3DO3DHO3'119.2°106.8°
O4DC4DC5D84.0°109.9°
O4DC4DH4D136.0°109.9°
C5DC4DH4D112.8°109.9°
C4DC5DO5D120.3°109.5°
C4DC5DH5'1108.3°109.5°
C4DC5DH5'2108.3°109.5°
O5DC5DH5'1108.3°109.4°
O5DC5DH5'2108.3°109.4°
C5DO5DPA140.5°106.9°
H5'1C5DH5'2101.6°109.5°
O5DPAO1A113.5°109.4°
O5DPAO2A111.5°109.5°
O5DPAO3A80.9°109.5°
O1APAO2A113.6°109.5°
O1APAO3A116.7°109.4°
O2APAO3A116.4°109.5°
PAO2AHOA2111.5°106.8°
PAO3APB134.7°106.8°
O3APBO1B102.7°109.5°
O3APBO2B107.9°109.4°
O3APBO3B109.2°109.5°
O1BPBO2B112.0°109.5°
O1BPBO3B110.3°109.5°
O2BPBO3B114.0°109.4°
PBO2BHOB2108.0°106.8°
PBO3BC1'146.2°106.9°
O3BC1'C2'104.2°109.4°
O3BC1'O5'94.6°109.4°
O3BC1'H1'121.4°109.4°
C2'C1'O5'109.7°109.8°
C2'C1'H1'108.8°109.4°
C1'C2'C3'118.2°109.0°
C1'C2'F2'111.9°109.5°
C1'C2'H2'100.9°109.6°
O5'C1'H1'116.8°109.4°
C1'O5'C5'112.2°107.6°
C3'C2'F2'108.9°109.6°
C3'C2'H2'104.4°109.6°
C2'C3'C4'109.2°108.6°
C2'C3'O3'107.1°109.6°
C2'C3'H3'111.0°109.6°
F2'C2'H2'112.0°109.5°
C4'C3'O3'108.8°109.7°
C4'C3'H3'109.3°109.7°
C3'C4'C5'106.4°109.0°
C3'C4'O4'108.8°109.5°
C3'C4'H4'112.7°109.5°
O3'C3'H3'111.4°109.5°
C3'O3'HO3A107.1°106.9°
C5'C4'O4'111.8°109.8°
C5'C4'H4'109.8°109.4°
C4'C5'C6'110.4°109.4°
C4'C5'O5'115.2°109.7°
C4'C5'H5'102.3°109.5°
O4'C4'H4'107.4°109.6°
C4'O4'HO4'108.8°106.9°
C6'C5'O5'99.5°109.4°
C6'C5'H5'117.3°109.4°
C5'C6'O6'128.9°109.5°
C5'C6'H6'1105.5°109.5°
C5'C6'H6'2105.5°109.5°
O5'C5'H5'112.7°109.4°
O6'C6'H6'1105.4°109.4°
O6'C6'H6'2105.4°109.5°
C6'O6'HO6'128.9°106.8°
H6'1C6'H6'2103.8°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1D180.0°179.7°
N1C2N3O2179.1°179.5°
N1C2N3C40.7°0.5°
N1C2N3HN3179.3°179.8°
C2N1C6C50.9°0.3°
C2N1C6H6179.1°179.8°
C2N1C1DC2D72.0°55.9°
C2N1C1DO4D162.5°58.3°
C2N1C1DH1D53.7°178.8°
C6N1C2N31.0°0.5°
C6N1C2O2179.9°180.0°
N1C6C5C40.4°0.0°
N1C6C5H6180.0°179.9°
N1C6C5H5179.6°180.0°
C6N1C1DC2D108.0°124.3°
C6N1C1DO4D17.6°121.4°
C6N1C1DH1D126.3°1.4°
C1DN1C2N3179.1°179.8°
C1DN1C2O20.0°0.3°
C1DN1C6C5179.1°180.0°
C1DN1C6H60.9°0.1°
N1C1DC2DO4D136.3°118.6°
N1C1DC2DH1D111.1°122.9°
N1C1DO4DH1D107.6°122.8°
N1C1DC2DO2'128.8°86.1°
N1C1DC2DC3D109.8°155.7°
N1C1DC2DH2D11.3°37.4°
N1C1DO4DC4D124.6°158.7°
C2N3C4HN3180.0°179.8°
C2N3C4C50.2°0.2°
C2N3C4O4179.9°179.7°
O2C2N3C4179.7°180.0°
O2C2N3HN30.2°0.3°
N3C4C5O4179.7°179.9°
N3C4C5C60.0°0.0°
N3C4C5H5180.0°180.0°
HN3N3C4C5179.8°180.0°
HN3N3C4O40.0°0.1°
C4C5C6H5180.0°180.0°
C4C5C6H6179.7°180.0°
O4C4C5C6179.7°179.9°
O4C4C5H50.3°0.1°
H5C5C6H60.3°0.0°
C2DC1DO4DH1D126.1°118.5°
C1DC2DO2'C3D115.9°112.7°
C1DC2DO2'H2D122.9°123.6°
C1DC2DC3DH2D122.8°118.2°
C1DC2DO2'HO2'180.0°180.0°
C1DC2DC3DC4D39.7°20.9°
C1DC2DC3DO3D160.5°98.0°
C1DC2DC3DH3D85.9°139.5°
C2DC1DO4DC4D1.7°40.0°
O4DC1DC2DO2'94.9°155.3°
O4DC1DC2DC3D26.5°37.1°
O4DC1DC2DH2D147.6°81.2°
C1DO4DC4DC3D23.4°26.4°
C1DO4DC4DC5D151.9°145.9°
C1DO4DC4DH4D91.2°93.1°
H1DC1DC2DO2'17.8°36.7°
H1DC1DC2DC3D139.2°81.5°
H1DC1DC2DH2D99.8°160.3°
H1DC1DO4DC4D127.8°78.5°
O2'C2DC3DH2D117.7°123.6°
O2'C2DC3DC4D79.9°139.2°
O2'C2DC3DO3D40.9°20.3°
O2'C2DC3DH3D154.5°102.2°
C3DC2DO2'HO2'64.1°67.3°
C2DC3DC4DO3D126.8°118.7°
C2DC3DC4DH3D119.4°118.6°
C2DC3DO3DH3D119.1°122.5°
C2DC3DC4DO4D37.9°1.9°
C2DC3DC4DC5D130.3°121.5°
C2DC3DC4DH4D102.5°117.6°
C2DC3DO3DHO3'180.0°61.5°
H2DC2DO2'HO2'57.1°56.4°
H2DC2DC3DC4D162.5°97.2°
H2DC2DC3DO3D76.8°143.8°
H2DC2DC3DH3D36.8°21.4°
C4DC3DO3DH3D125.5°122.7°
C3DC4DO4DC5D128.5°119.5°
C3DC4DO4DH4D114.6°119.5°
C3DC4DC5DH4D121.0°121.0°
C4DC3DO3DHO3'64.6°176.2°
C3DC4DC5DO5D16.3°179.7°
C3DC4DC5DH5'1108.9°59.7°
C3DC4DC5DH5'2141.7°60.3°
O3DC3DC4DO4D164.7°120.6°
O3DC3DC4DC5D102.9°119.8°
O3DC3DC4DH4D24.3°1.1°
H3DC3DC4DO4D81.5°116.7°
H3DC3DC4DC5D10.9°2.8°
H3DC3DC4DH4D138.1°123.8°
H3DC3DO3DHO3'60.9°61.1°
O4DC4DC5DH4D137.7°121.0°
O4DC4DC5DO5D117.7°61.7°
O4DC4DC5DH5'17.5°58.3°
O4DC4DC5DH5'2117.0°178.3°
C4DC5DO5DH5'1125.2°120.0°
C4DC5DO5DH5'2125.3°120.1°
C4DC5DH5'1H5'2114.0°120.1°
C4DC5DO5DPA34.8°180.0°
H4DC4DC5DO5D104.6°59.3°
H4DC4DC5DH5'1130.2°179.3°
H4DC4DC5DH5'220.7°60.7°
O5DC5DH5'1H5'2114.0°119.9°
C5DO5DPAO1A1.6°60.0°
C5DO5DPAO2A131.4°60.0°
C5DO5DPAO3A113.7°180.0°
H5'1C5DO5DPA160.0°60.0°
H5'2C5DO5DPA90.5°60.0°
O5DPAO1AO2A128.8°120.0°
O5DPAO1AO3A91.5°120.0°
O5DPAO2AO3A90.3°120.0°
O5DPAO2AHOA2180.0°60.0°
O5DPAO3APB179.6°180.0°
O1APAO2AO3A139.9°120.0°
O1APAO2AHOA250.2°180.0°
O1APAO3APB67.7°60.0°
O2APAO3APB70.9°60.0°
O3APAO2AHOA289.7°60.1°
PAO3APBO1B47.5°60.0°
PAO3APBO2B70.9°60.0°
PAO3APBO3B164.6°179.9°
O3APBO1BO2B115.6°119.9°
O3APBO1BO3B116.3°120.1°
O3APBO2BO3B121.5°120.0°
O3APBO2BHOB2180.0°60.0°
O3APBO3BC1'110.1°180.0°
O1BPBO2BO3B126.2°120.0°
O1BPBO2BHOB267.7°180.0°
O1BPBO3BC1'2.1°59.9°
O2BPBO3BC1'129.1°60.1°
O3BPBO2BHOB258.5°60.0°
PBO3BC1'C2'41.3°149.7°
PBO3BC1'O5'152.9°90.1°
PBO3BC1'H1'81.7°29.8°
O3BC1'C2'O5'100.3°120.0°
O3BC1'C2'H1'130.8°119.9°
O3BC1'O5'H1'128.7°119.8°
O3BC1'C2'C3'48.9°58.7°
O3BC1'C2'F2'78.8°61.2°
O3BC1'C2'H2'161.9°178.7°
O3BC1'O5'C5'52.5°52.4°
C2'C1'O5'H1'124.4°120.1°
C1'C2'C3'F2'129.1°119.8°
C1'C2'C3'H2'111.1°120.0°
C1'C2'F2'H2'112.4°120.2°
C1'C2'C3'C4'49.4°53.8°
C1'C2'C3'O3'167.0°173.7°
C1'C2'C3'H3'71.2°66.0°
C2'C1'O5'C5'54.4°67.6°
O5'C1'C2'C3'51.4°61.3°
O5'C1'C2'F2'179.1°178.8°
O5'C1'C2'H2'61.7°58.7°
C1'O5'C5'C4'62.1°67.7°
C1'O5'C5'C6'179.9°172.3°
C1'O5'C5'H5'54.8°52.4°
H1'C1'C2'C3'179.7°178.6°
H1'C1'C2'F2'52.0°58.7°
H1'C1'C2'H2'67.2°61.4°
H1'C1'O5'C5'178.8°172.3°
C3'C2'F2'H2'115.0°120.2°
C2'C3'C4'O3'116.6°119.8°
C2'C3'C4'H3'121.6°119.8°
C2'C3'O3'H3'121.5°120.3°
C2'C3'C4'C5'47.3°53.9°
C2'C3'C4'O4'73.2°66.2°
C2'C3'C4'H4'167.7°173.6°
C2'C3'O3'HO3A180.0°60.0°
F2'C2'C3'C4'178.5°173.7°
F2'C2'C3'O3'63.8°66.5°
F2'C2'C3'H3'57.9°53.8°
H2'C2'C3'C4'61.7°66.1°
H2'C2'C3'O3'55.9°53.7°
H2'C2'C3'H3'177.7°174.0°
C4'C3'O3'H3'120.6°120.5°
C3'C4'C5'O4'118.6°119.9°
C3'C4'C5'H4'122.3°119.8°
C3'C4'O4'H4'122.3°120.2°
C3'C4'C5'C6'168.7°178.6°
C3'C4'C5'O5'57.0°61.4°
C3'C4'C5'H5'65.7°58.7°
C4'C3'O3'HO3A62.1°179.2°
C3'C4'O4'HO4'180.0°60.0°
O3'C3'C4'C5'163.9°173.7°
O3'C3'C4'O4'43.4°53.6°
O3'C3'C4'H4'75.7°66.6°
H3'C3'C4'C5'74.2°66.0°
H3'C3'C4'O4'165.2°174.0°
H3'C3'C4'H4'46.1°53.7°
H3'C3'O3'HO3A58.5°60.3°
C5'C4'O4'H4'120.5°120.2°
C4'C5'C6'O5'121.6°120.2°
C4'C5'C6'H5'116.6°119.9°
C4'C5'O5'H5'116.9°120.1°
C4'C5'C6'O6'59.9°179.9°
C4'C5'C6'H6'165.4°60.1°
C4'C5'C6'H6'2174.9°59.9°
C5'C4'O4'HO4'62.8°179.6°
O4'C4'C5'C6'50.1°61.5°
O4'C4'C5'O5'61.7°58.6°
O4'C4'C5'H5'175.7°178.6°
H4'C4'C5'C6'69.0°58.9°
H4'C4'C5'O5'179.2°178.9°
H4'C4'C5'H5'56.6°61.0°
H4'C4'O4'HO4'57.7°60.1°
C6'C5'O5'H5'125.1°119.9°
C5'C6'O6'H6'1125.3°120.0°
C5'C6'O6'H6'2125.2°120.0°
C5'C6'H6'1H6'2110.7°120.0°
C5'C6'O6'HO6'179.9°179.9°
O5'C5'C6'O6'178.5°59.9°
O5'C5'C6'H6'156.2°60.1°
O5'C5'C6'H6'253.3°179.9°
H5'C5'C6'O6'56.7°60.0°
H5'C5'C6'H6'1178.0°180.0°
H5'C5'C6'H6'268.5°60.0°
O6'C6'H6'1H6'2110.6°120.0°
H6'1C6'O6'HO6'54.8°60.0°
H6'2C6'O6'HO6'54.7°59.9°

246704

PDB entries from 2025-12-24

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