UPC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1'	N1	sing	1.46Å	1.47Å
N1	C6	sing	1.37Å	1.35Å
N1	C2	sing	1.35Å	1.41Å
O2	C2	doub	1.22Å	1.36Å
C2	N3	sing	1.35Å	1.35Å
N3	C4	sing	1.35Å	1.35Å
C5	C4	sing	1.42Å	1.40Å
C4	O4	doub	1.22Å	1.35Å
C6	C5	doub	1.35Å	1.39Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
O2A	PA	doub	1.48Å	1.51Å
PA	C3A	sing	1.82Å	1.72Å
PA	O5'	sing	1.61Å	1.63Å
PA	O1A	sing	1.61Å	1.49Å
O2B	PB	doub	1.48Å	1.50Å
O3B	PB	sing	1.61Å	1.60Å
PB	O1B	sing	1.61Å	1.51Å
PB	C3A	sing	1.82Å	1.74Å
O2G	PG	doub	1.48Å	1.51Å
O1G	PG	sing	1.61Å	1.51Å
PG	O3B	sing	1.61Å	1.62Å
PG	O3G	sing	1.61Å	1.82Å
O4'	C1'	sing	1.44Å	1.43Å
C2'	C1'	sing	1.54Å	1.53Å
C1'	H1'	sing	1.09Å	1.10Å
O1A	HO1A	sing	0.97Å	0.95Å
O1B	HO1B	sing	0.97Å	0.95Å
O1G	HO1G	sing	0.97Å	0.95Å
C3'	C2'	sing	1.55Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
O3'	C3'	sing	1.43Å	1.43Å
C4'	C3'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C3A	H3A	sing	1.09Å	1.10Å
C3A	H3AA	sing	1.09Å	1.10Å
O3G	HO3G	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.52Å
C4'	O4'	sing	1.45Å	1.44Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
N3	HN3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1'	N1	C6	122.6°	119.7°
C1'	N1	C2	117.5°	119.7°
N1	C1'	O4'	113.1°	109.9°
N1	C1'	C2'	105.6°	109.9°
N1	C1'	H1'	108.6°	109.8°
C6	N1	C2	119.9°	120.6°
N1	C6	C5	120.0°	119.7°
N1	C6	H6	120.0°	120.2°
N1	C2	O2	119.9°	119.6°
N1	C2	N3	120.1°	120.9°
O2	C2	N3	119.9°	119.5°
C2	N3	C4	120.2°	120.3°
C2	N3	HN3	119.9°	119.9°
N3	C4	C5	121.2°	119.4°
N3	C4	O4	118.5°	120.3°
C4	N3	HN3	119.9°	119.9°
C5	C4	O4	120.4°	120.3°
C4	C5	C6	118.5°	119.1°
C4	C5	H5	120.8°	120.5°
C6	C5	H5	120.7°	120.4°
C5	C6	H6	120.0°	120.1°
O2A	PA	C3A	107.8°	109.5°
O2A	PA	O5'	110.8°	109.5°
O2A	PA	O1A	116.1°	109.5°
C3A	PA	O5'	102.5°	109.5°
C3A	PA	O1A	113.4°	109.5°
PA	C3A	PB	119.7°	109.5°
PA	C3A	H3A	106.2°	109.5°
PA	C3A	H3AA	106.2°	109.5°
O5'	PA	O1A	105.3°	109.5°
PA	O5'	C5'	124.0°	123.0°
PA	O1A	HO1A	109.5°	114.0°
O2B	PB	O3B	107.1°	109.5°
O2B	PB	O1B	115.8°	109.5°
O2B	PB	C3A	111.5°	109.5°
O3B	PB	O1B	107.2°	109.5°
O3B	PB	C3A	104.9°	109.5°
PB	O3B	PG	123.1°	134.0°
O1B	PB	C3A	109.7°	109.5°
PB	O1B	HO1B	109.5°	114.0°
PB	C3A	H3A	106.2°	109.5°
PB	C3A	H3AA	106.2°	109.5°
O2G	PG	O1G	116.4°	109.4°
O2G	PG	O3B	102.9°	109.5°
O2G	PG	O3G	107.2°	109.5°
O1G	PG	O3B	107.8°	109.5°
O1G	PG	O3G	111.9°	109.5°
PG	O1G	HO1G	109.5°	114.0°
O3B	PG	O3G	110.2°	109.5°
PG	O3G	HO3G	109.5°	114.0°
O4'	C1'	C2'	106.2°	107.4°
O4'	C1'	H1'	108.1°	109.9°
C1'	O4'	C4'	110.0°	106.8°
C2'	C1'	H1'	115.3°	109.9°
C1'	C2'	C3'	103.1°	104.2°
C1'	C2'	H2'	111.6°	110.4°
C1'	C2'	H2'A	111.7°	110.5°
C3'	C2'	H2'	111.7°	110.5°
C3'	C2'	H2'A	111.6°	110.6°
C2'	C3'	O3'	111.5°	110.9°
C2'	C3'	C4'	101.4°	102.1°
C2'	C3'	H3'	115.4°	110.9°
H2'	C2'	H2'A	107.2°	110.5°
O3'	C3'	C4'	114.8°	110.9°
O3'	C3'	H3'	102.2°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	112.1°	110.9°
C3'	C4'	C5'	114.7°	110.6°
C3'	C4'	O4'	105.0°	103.6°
C3'	C4'	H4'	109.0°	110.7°
H3A	C3A	H3AA	112.5°	109.4°
C5'	C4'	O4'	109.5°	110.6°
C5'	C4'	H4'	104.5°	110.7°
C4'	C5'	O5'	110.6°	109.5°
C4'	C5'	H5'	109.1°	109.5°
C4'	C5'	H5'A	109.1°	109.5°
O4'	C4'	H4'	114.3°	110.5°
O5'	C5'	H5'	109.1°	109.4°
O5'	C5'	H5'A	109.1°	109.5°
H5'	C5'	H5'A	109.9°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1'	N1	C6	C2	178.8°	179.7°
C1'	N1	C2	O2	0.9°	0.3°
C1'	N1	C2	N3	179.0°	179.7°
C1'	N1	C6	C5	178.7°	179.7°
C1'	N1	C6	H6	1.4°	0.3°
N1	C1'	O4'	C2'	115.4°	119.5°
N1	C1'	O4'	H1'	120.4°	121.0°
N1	C1'	C2'	H1'	119.9°	121.0°
N1	C1'	C2'	C3'	97.0°	121.5°
N1	C1'	C2'	H2'	143.0°	119.9°
N1	C1'	C2'	H2'A	23.0°	2.6°
N1	C1'	O4'	C4'	114.7°	145.9°
C6	N1	C2	O2	179.8°	180.0°
C6	N1	C2	N3	0.2°	0.0°
N1	C6	C5	C4	0.1°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	180.0°	180.0°
C6	N1	C1'	O4'	20.4°	126.7°
C6	N1	C1'	C2'	95.3°	115.3°
C6	N1	C1'	H1'	140.5°	5.7°
N1	C2	O2	N3	180.0°	180.0°
N1	C2	N3	C4	0.5°	0.1°
C2	N1	C6	C5	0.1°	0.0°
C2	N1	C6	H6	179.9°	180.0°
C2	N1	C1'	O4'	160.8°	53.6°
C2	N1	C1'	C2'	83.5°	64.4°
C2	N1	C1'	H1'	40.7°	174.6°
N1	C2	N3	HN3	179.5°	179.9°
O2	C2	N3	C4	179.4°	180.0°
O2	C2	N3	HN3	0.6°	0.1°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	C5	0.6°	0.1°
C2	N3	C4	O4	179.4°	180.0°
N3	C4	C5	O4	179.9°	179.9°
N3	C4	C5	C6	0.3°	0.0°
N3	C4	C5	H5	179.7°	180.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.9°	180.0°
C5	C4	N3	HN3	179.4°	179.9°
O4	C4	C5	C6	179.7°	179.9°
O4	C4	C5	H5	0.4°	0.1°
O4	C4	N3	HN3	0.6°	0.1°
H5	C5	C6	H6	0.1°	0.0°
O2A	PA	C3A	O5'	116.9°	120.0°
O2A	PA	C3A	O1A	130.0°	120.0°
O2A	PA	O5'	O1A	126.3°	120.0°
O2A	PA	C3A	PB	51.2°	60.0°
O2A	PA	O1A	HO1A	0.0°	180.0°
O2A	PA	C3A	H3A	171.2°	60.0°
O2A	PA	C3A	H3AA	68.8°	179.9°
O2A	PA	O5'	C5'	15.6°	55.0°
C3A	PA	O5'	O1A	118.9°	120.0°
PA	C3A	PB	O2B	17.8°	60.0°
PA	C3A	PB	O3B	133.3°	180.0°
PA	C3A	PB	O1B	111.8°	60.0°
PA	C3A	PB	H3A	120.0°	120.0°
PA	C3A	PB	H3AA	120.0°	120.0°
C3A	PA	O1A	HO1A	125.7°	60.0°
PA	C3A	H3A	H3AA	115.8°	120.0°
C3A	PA	O5'	C5'	99.2°	175.0°
O5'	PA	C3A	PB	65.7°	180.0°
O5'	PA	O1A	HO1A	123.0°	60.0°
O5'	PA	C3A	H3A	54.3°	60.0°
O5'	PA	C3A	H3AA	174.3°	60.0°
PA	O5'	C5'	C4'	151.7°	180.0°
PA	O5'	C5'	H5'	88.3°	60.0°
PA	O5'	C5'	H5'A	31.7°	59.9°
O1A	PA	C3A	PB	178.7°	60.0°
O1A	PA	C3A	H3A	58.7°	180.0°
O1A	PA	C3A	H3AA	61.3°	60.1°
O1A	PA	O5'	C5'	141.9°	65.0°
O2B	PB	O3B	O1B	124.9°	120.0°
O2B	PB	O3B	C3A	118.6°	120.0°
O2B	PB	O1B	C3A	127.3°	120.0°
O2B	PB	O3B	PG	61.8°	60.0°
O2B	PB	O1B	HO1B	0.0°	180.0°
O2B	PB	C3A	H3A	137.8°	180.0°
O2B	PB	C3A	H3AA	102.2°	60.0°
O3B	PB	O1B	C3A	113.3°	120.0°
PB	O3B	PG	O2G	142.4°	45.0°
PB	O3B	PG	O1G	18.8°	75.0°
PB	O3B	PG	O3G	103.6°	165.0°
O3B	PB	O1B	HO1B	119.4°	60.0°
O3B	PB	C3A	H3A	106.6°	60.0°
O3B	PB	C3A	H3AA	13.3°	60.0°
O1B	PB	O3B	PG	173.4°	60.0°
O1B	PB	C3A	H3A	8.2°	60.0°
O1B	PB	C3A	H3AA	128.2°	180.0°
C3A	PB	O3B	PG	56.8°	180.0°
C3A	PB	O1B	HO1B	127.3°	60.0°
PB	C3A	H3A	H3AA	115.8°	120.0°
O2G	PG	O1G	O3B	114.9°	120.0°
O2G	PG	O1G	O3G	123.8°	120.0°
O2G	PG	O3B	O3G	114.0°	120.0°
O2G	PG	O1G	HO1G	0.0°	180.0°
O2G	PG	O3G	HO3G	0.0°	59.9°
O1G	PG	O3B	O3G	122.4°	120.0°
O1G	PG	O3G	HO3G	128.8°	60.0°
O3B	PG	O1G	HO1G	114.9°	60.0°
O3B	PG	O3G	HO3G	111.2°	180.0°
O3G	PG	O1G	HO1G	123.8°	60.0°
O4'	C1'	C2'	H1'	119.7°	119.5°
O4'	C1'	C2'	C3'	23.4°	2.0°
O4'	C1'	C2'	H2'	96.6°	120.7°
O4'	C1'	C2'	H2'A	143.4°	116.8°
C1'	O4'	C4'	C3'	22.3°	39.9°
C1'	O4'	C4'	C5'	146.0°	158.5°
C1'	O4'	C4'	H4'	97.2°	78.6°
C1'	C2'	C3'	H2'	120.0°	118.6°
C1'	C2'	C3'	H2'A	120.0°	118.7°
C1'	C2'	H2'	H2'A	122.6°	122.5°
C1'	C2'	C3'	O3'	158.1°	139.1°
C1'	C2'	C3'	C4'	35.5°	20.9°
C1'	C2'	C3'	H3'	85.9°	97.3°
C2'	C1'	O4'	C4'	0.7°	26.4°
H1'	C1'	C2'	C3'	143.1°	117.5°
H1'	C1'	C2'	H2'	23.1°	1.1°
H1'	C1'	C2'	H2'A	96.9°	123.6°
H1'	C1'	O4'	C4'	125.0°	93.2°
C3'	C2'	H2'	H2'A	122.6°	122.7°
C2'	C3'	O3'	C4'	114.6°	112.7°
C2'	C3'	O3'	H3'	123.8°	123.6°
C2'	C3'	C4'	H3'	123.6°	118.2°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	C5'	156.2°	155.5°
C2'	C3'	C4'	O4'	35.9°	37.0°
C2'	C3'	C4'	H4'	87.0°	81.5°
H2'	C2'	C3'	O3'	38.1°	20.5°
H2'	C2'	C3'	C4'	84.5°	97.8°
H2'	C2'	C3'	H3'	154.1°	144.0°
H2'A	C2'	C3'	O3'	81.9°	102.2°
H2'A	C2'	C3'	C4'	155.5°	139.6°
H2'A	C2'	C3'	H3'	34.1°	21.4°
O3'	C3'	C4'	H3'	116.0°	123.6°
O3'	C3'	C4'	C5'	83.5°	86.3°
O3'	C3'	C4'	O4'	156.2°	155.2°
O3'	C3'	C4'	H4'	33.3°	36.7°
C4'	C3'	O3'	HO3'	65.4°	174.2°
C3'	C4'	C5'	O4'	117.8°	114.2°
C3'	C4'	C5'	H4'	119.3°	123.0°
C3'	C4'	O4'	H4'	119.5°	118.6°
C3'	C4'	C5'	O5'	51.2°	175.0°
C3'	C4'	C5'	H5'	171.2°	55.0°
C3'	C4'	C5'	H5'A	68.8°	65.0°
H3'	C3'	O3'	HO3'	56.3°	62.1°
H3'	C3'	C4'	C5'	32.6°	37.3°
H3'	C3'	C4'	O4'	87.8°	81.2°
H3'	C3'	C4'	H4'	149.3°	160.3°
C5'	C4'	O4'	H4'	116.8°	122.9°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.1°
C4'	C5'	H5'	H5'A	119.6°	120.0°
O4'	C4'	C5'	O5'	66.6°	70.8°
O4'	C4'	C5'	H5'	53.4°	169.2°
O4'	C4'	C5'	H5'A	173.4°	49.2°
H4'	C4'	C5'	O5'	170.5°	51.9°
H4'	C4'	C5'	H5'	69.5°	68.0°
H4'	C4'	C5'	H5'A	50.5°	172.0°
O5'	C5'	H5'	H5'A	119.5°	120.0°

Definition date:	2011-07-11
Last modified:	2011-10-07
Release status:	REL
Processing site:	RCSB
Derived from:	3SPY