UOB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O2 | C2 | doub | 1.22Å | 1.23Å | |
| N3 | C2 | sing | 1.35Å | 1.40Å | |
| N3 | C4 | sing | 1.35Å | 1.40Å | |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| C2 | N1 | sing | 1.35Å | 1.34Å | |
| C4 | C5 | sing | 1.41Å | 1.39Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| N1 | C6 | sing | 1.37Å | 1.40Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C1' | O4' | sing | 1.44Å | 1.45Å | |
| C1' | C2' | sing | 1.55Å | 1.52Å | |
| CM' | O2' | sing | 1.43Å | 1.43Å | |
| O4' | C4' | sing | 1.43Å | 1.46Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| P | OP1 | sing | 1.61Å | 1.60Å | |
| P | OP2 | doub | 1.48Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | OM | sing | 1.43Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| OM | CM | sing | 1.43Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5S | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CM | HM3 | sing | 1.09Å | 1.10Å | |
| CM | HM1 | sing | 1.09Å | 1.10Å | |
| CM | HM2 | sing | 1.09Å | 1.10Å | |
| CM' | HM' | sing | 1.09Å | 1.10Å | |
| CM' | H5T | sing | 1.09Å | 1.10Å | |
| CM' | H5U | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.60Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O2 | C2 | N3 | 119.8° | 119.5° |
| O2 | C2 | N1 | 119.6° | 119.6° |
| C2 | N3 | C4 | 119.8° | 120.2° |
| N3 | C2 | N1 | 120.5° | 120.9° |
| C2 | N3 | H3 | 120.1° | 119.9° |
| N3 | C4 | O4 | 120.0° | 120.3° |
| N3 | C4 | C5 | 119.6° | 119.4° |
| C4 | N3 | H3 | 120.1° | 119.9° |
| O4 | C4 | C5 | 120.4° | 120.3° |
| C2 | N1 | C1' | 118.3° | 119.6° |
| C2 | N1 | C6 | 120.7° | 120.6° |
| C4 | C5 | C6 | 119.6° | 119.1° |
| C4 | C5 | H5 | 120.2° | 120.5° |
| C1' | N1 | C6 | 120.9° | 119.7° |
| N1 | C1' | O4' | 110.6° | 110.2° |
| N1 | C1' | C2' | 116.6° | 110.3° |
| N1 | C1' | H1' | 109.4° | 110.4° |
| N1 | C6 | C5 | 119.9° | 119.7° |
| N1 | C6 | H6 | 120.1° | 120.1° |
| C6 | C5 | H5 | 120.2° | 120.4° |
| C5 | C6 | H6 | 120.1° | 120.2° |
| O4' | C1' | C2' | 101.4° | 105.2° |
| C1' | O4' | C4' | 106.9° | 109.9° |
| O4' | C1' | H1' | 109.8° | 110.4° |
| C1' | C2' | O2' | 109.5° | 111.1° |
| C1' | C2' | C3' | 98.9° | 100.9° |
| C2' | C1' | H1' | 108.8° | 110.3° |
| C1' | C2' | H2' | 111.3° | 111.1° |
| CM' | O2' | C2' | 107.5° | 114.0° |
| O2' | CM' | HM' | 109.5° | 109.4° |
| O2' | CM' | H5T | 109.5° | 109.4° |
| O2' | CM' | H5U | 109.5° | 109.5° |
| O4' | C4' | C3' | 105.2° | 107.6° |
| O4' | C4' | C5' | 104.1° | 109.8° |
| O4' | C4' | OM | 112.8° | 109.9° |
| O2' | C2' | C3' | 111.8° | 111.2° |
| O2' | C2' | H2' | 112.8° | 111.0° |
| C2' | C3' | C4' | 102.3° | 102.3° |
| C2' | C3' | O3' | 110.5° | 110.8° |
| C3' | C2' | H2' | 111.7° | 111.1° |
| C2' | C3' | H3' | 111.5° | 110.9° |
| O5' | P | OP1 | 112.0° | 109.5° |
| O5' | P | OP2 | 105.2° | 109.5° |
| P | O5' | C5' | 117.3° | 123.0° |
| O5' | P | OP3 | 104.4° | 109.5° |
| OP1 | P | OP2 | 113.0° | 109.4° |
| P | OP1 | H2 | 109.5° | 114.0° |
| OP1 | P | OP3 | 112.1° | 109.5° |
| OP2 | P | OP3 | 109.7° | 109.5° |
| O5' | C5' | C4' | 109.2° | 109.5° |
| O5' | C5' | H5' | 109.6° | 109.5° |
| O5' | C5' | H5S | 109.6° | 109.5° |
| C3' | C4' | C5' | 110.3° | 109.9° |
| C3' | C4' | OM | 109.4° | 109.8° |
| C4' | C3' | O3' | 108.5° | 110.8° |
| C4' | C3' | H3' | 111.2° | 111.0° |
| C5' | C4' | OM | 114.6° | 109.8° |
| C4' | C5' | H5' | 109.5° | 109.5° |
| C4' | C5' | H5S | 109.5° | 109.4° |
| C4' | OM | CM | 117.7° | 114.0° |
| O3' | C3' | H3' | 112.4° | 110.7° |
| C3' | O3' | H1 | 109.5° | 114.0° |
| OM | CM | HM3 | 109.5° | 109.5° |
| OM | CM | HM1 | 109.5° | 109.4° |
| OM | CM | HM2 | 109.5° | 109.4° |
| H5' | C5' | H5S | 109.5° | 109.4° |
| HM3 | CM | HM1 | 109.5° | 109.5° |
| HM3 | CM | HM2 | 109.5° | 109.5° |
| HM1 | CM | HM2 | 109.5° | 109.5° |
| HM' | CM' | H5T | 109.4° | 109.5° |
| HM' | CM' | H5U | 109.5° | 109.5° |
| H5T | CM' | H5U | 109.5° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O2 | C2 | N3 | N1 | 179.1° | 179.8° |
| O2 | C2 | N3 | C4 | 180.0° | 179.7° |
| O2 | C2 | N1 | C1' | 2.3° | 0.2° |
| O2 | C2 | N1 | C6 | 179.1° | 179.7° |
| O2 | C2 | N3 | H3 | 0.1° | 0.2° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.9° | 179.9° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| N3 | C2 | N1 | C1' | 178.6° | 180.0° |
| N3 | C2 | N1 | C6 | 1.8° | 0.1° |
| N3 | C4 | O4 | C5 | 179.9° | 180.0° |
| C4 | N3 | C2 | N1 | 0.9° | 0.1° |
| N3 | C4 | C5 | C6 | 0.1° | 0.0° |
| N3 | C4 | C5 | H5 | 179.9° | 180.0° |
| O4 | C4 | C5 | C6 | 180.0° | 179.9° |
| O4 | C4 | C5 | H5 | 0.0° | 0.0° |
| O4 | C4 | N3 | H3 | 0.1° | 0.0° |
| C2 | N1 | C1' | C6 | 176.8° | 180.0° |
| C2 | N1 | C6 | C5 | 1.9° | 0.0° |
| C2 | N1 | C1' | O4' | 175.9° | 118.0° |
| C2 | N1 | C1' | C2' | 69.0° | 126.3° |
| C2 | N1 | C1' | H1' | 54.9° | 4.2° |
| C2 | N1 | C6 | H6 | 178.1° | 180.0° |
| N1 | C2 | N3 | H3 | 179.1° | 180.0° |
| C4 | C5 | C6 | N1 | 1.0° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 180.0° |
| C4 | C5 | C6 | H6 | 179.0° | 180.0° |
| C5 | C4 | N3 | H3 | 180.0° | 180.0° |
| C1' | N1 | C6 | C5 | 178.6° | 180.0° |
| N1 | C1' | O4' | C2' | 124.3° | 118.9° |
| N1 | C1' | O4' | H1' | 120.8° | 122.2° |
| N1 | C1' | C2' | H1' | 124.2° | 122.2° |
| N1 | C1' | O4' | C4' | 88.7° | 143.3° |
| N1 | C1' | C2' | O2' | 172.0° | 86.8° |
| N1 | C1' | C2' | C3' | 71.0° | 155.3° |
| N1 | C1' | C2' | H2' | 46.6° | 37.4° |
| C1' | N1 | C6 | H6 | 1.4° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C1' | O4' | 0.9° | 62.1° |
| C6 | N1 | C1' | C2' | 114.3° | 53.6° |
| C6 | N1 | C1' | H1' | 121.9° | 175.8° |
| N1 | C6 | C5 | H5 | 179.0° | 180.0° |
| O4' | C1' | C2' | H1' | 115.7° | 119.0° |
| O4' | C1' | C2' | O2' | 67.8° | 154.4° |
| O4' | C1' | C2' | C3' | 49.2° | 36.5° |
| C1' | O4' | C4' | C3' | 7.8° | 1.8° |
| C1' | O4' | C4' | C5' | 123.8° | 117.8° |
| C1' | O4' | C4' | OM | 111.3° | 121.3° |
| O4' | C1' | C2' | H2' | 166.7° | 81.4° |
| C1' | C2' | O2' | CM' | 91.0° | 91.5° |
| C2' | C1' | O4' | C4' | 35.6° | 24.5° |
| C1' | C2' | O2' | C3' | 108.6° | 111.6° |
| C1' | C2' | O2' | H2' | 124.5° | 124.2° |
| C1' | C2' | C3' | H2' | 117.3° | 117.9° |
| C1' | C2' | C3' | C4' | 43.9° | 34.1° |
| C1' | C2' | C3' | O3' | 159.2° | 84.0° |
| C1' | C2' | C3' | H3' | 75.0° | 152.5° |
| CM' | O2' | C2' | C3' | 160.4° | 157.0° |
| CM' | O2' | C2' | H2' | 33.5° | 32.7° |
| O2' | CM' | HM' | H5T | 120.0° | 119.9° |
| O2' | CM' | HM' | H5U | 120.0° | 120.0° |
| O2' | CM' | H5T | H5U | 120.0° | 120.0° |
| O4' | C4' | C3' | C2' | 23.4° | 21.3° |
| O4' | C4' | C5' | O5' | 63.8° | 66.0° |
| O4' | C4' | C3' | C5' | 111.7° | 119.5° |
| O4' | C4' | C3' | OM | 121.4° | 119.6° |
| O4' | C4' | C5' | OM | 123.6° | 120.9° |
| O4' | C4' | C3' | O3' | 140.3° | 96.9° |
| O4' | C4' | OM | CM | 135.4° | 52.2° |
| C4' | O4' | C1' | H1' | 150.5° | 94.5° |
| O4' | C4' | C3' | H3' | 95.6° | 139.6° |
| O4' | C4' | C5' | H5' | 176.2° | 54.1° |
| O4' | C4' | C5' | H5S | 56.1° | 174.0° |
| O2' | C2' | C3' | H2' | 127.5° | 124.2° |
| O2' | C2' | C3' | C4' | 71.3° | 152.0° |
| O2' | C2' | C3' | O3' | 44.0° | 33.9° |
| O2' | C2' | C1' | H1' | 47.8° | 35.4° |
| O2' | C2' | C3' | H3' | 169.8° | 89.5° |
| C2' | O2' | CM' | HM' | 180.0° | 60.0° |
| C2' | O2' | CM' | H5T | 60.0° | 60.0° |
| C2' | O2' | CM' | H5U | 60.0° | 180.0° |
| C2' | C3' | C4' | O3' | 116.8° | 118.2° |
| C2' | C3' | C4' | H3' | 119.1° | 118.3° |
| C2' | C3' | C4' | C5' | 88.2° | 140.8° |
| C2' | C3' | C4' | OM | 144.8° | 98.3° |
| C2' | C3' | O3' | H3' | 125.3° | 123.5° |
| C3' | C2' | C1' | H1' | 164.8° | 82.5° |
| C2' | C3' | O3' | H1 | 180.0° | 61.5° |
| O5' | P | OP1 | OP2 | 118.6° | 120.0° |
| O5' | P | OP1 | OP3 | 116.9° | 120.0° |
| O5' | P | OP2 | OP3 | 111.8° | 120.1° |
| P | O5' | C5' | C4' | 162.0° | 180.0° |
| P | O5' | C5' | H5' | 78.0° | 60.0° |
| P | O5' | C5' | H5S | 42.1° | 60.0° |
| O5' | P | OP1 | H2 | 118.6° | 60.0° |
| O5' | P | OP3 | HOP3 | 112.3° | 180.0° |
| OP1 | P | OP2 | OP3 | 125.8° | 120.0° |
| OP1 | P | O5' | C5' | 153.6° | 65.0° |
| OP1 | P | OP3 | HOP3 | 126.3° | 59.9° |
| OP2 | P | O5' | C5' | 30.5° | 55.0° |
| OP2 | P | OP1 | H2 | 0.0° | 180.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 60.0° |
| O5' | C5' | C4' | C3' | 176.2° | 175.8° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5S | 120.0° | 120.0° |
| O5' | C5' | C4' | OM | 59.8° | 54.9° |
| O5' | C5' | H5' | H5S | 120.2° | 120.0° |
| C5' | O5' | P | OP3 | 85.0° | 175.0° |
| C3' | C4' | C5' | OM | 124.0° | 120.9° |
| C4' | C3' | O3' | H3' | 123.3° | 123.7° |
| C3' | C4' | OM | CM | 108.0° | 66.0° |
| C4' | C3' | C2' | H2' | 161.1° | 83.8° |
| C3' | C4' | C5' | H5' | 63.8° | 64.1° |
| C3' | C4' | C5' | H5S | 56.2° | 55.8° |
| C4' | C3' | O3' | H1 | 68.6° | 174.3° |
| C5' | C4' | C3' | O3' | 28.6° | 22.7° |
| C5' | C4' | OM | CM | 16.5° | 173.1° |
| C5' | C4' | C3' | H3' | 152.7° | 100.8° |
| C4' | C5' | H5' | H5S | 120.1° | 120.0° |
| OM | C4' | C3' | O3' | 98.4° | 143.6° |
| OM | C4' | C3' | H3' | 25.7° | 20.1° |
| OM | C4' | C5' | H5' | 60.1° | 175.0° |
| OM | C4' | C5' | H5S | 179.8° | 65.1° |
| C4' | OM | CM | HM3 | 180.0° | 52.6° |
| C4' | OM | CM | HM1 | 60.0° | 67.4° |
| C4' | OM | CM | HM2 | 60.0° | 172.6° |
| O3' | C3' | C2' | H2' | 83.5° | 158.1° |
| OM | CM | HM3 | HM1 | 120.0° | 120.0° |
| OM | CM | HM3 | HM2 | 120.0° | 120.0° |
| OM | CM | HM1 | HM2 | 120.0° | 119.9° |
| H1' | C1' | C2' | H2' | 77.6° | 159.6° |
| H2' | C2' | C3' | H3' | 42.3° | 34.7° |
| H3' | C3' | O3' | H1 | 54.7° | 62.0° |
| H5 | C5 | C6 | H6 | 1.0° | 0.0° |
| HM3 | CM | HM1 | HM2 | 120.0° | 120.0° |
| HM' | CM' | H5T | H5U | 120.0° | 120.0° |
| H2 | OP1 | P | OP3 | 124.5° | 60.1° |
