UOA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| OP1 | P | sing | 1.61Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.50Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| OP2 | P | doub | 1.48Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| O5' | C5' | sing | 1.43Å | 1.50Å | |
| C5' | C4' | sing | 1.53Å | 1.48Å | |
| C4' | OCM | sing | 1.43Å | 1.50Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C2' | C1' | sing | 1.55Å | 1.47Å | |
| OCM | CMC | sing | 1.43Å | 1.52Å | |
| O2' | C'' | sing | 1.43Å | 1.41Å | |
| C6 | C5 | doub | 1.35Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.41Å | |
| C1' | O4' | sing | 1.44Å | 1.49Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C5 | C4 | sing | 1.42Å | 1.40Å | |
| N1 | C2 | sing | 1.34Å | 1.33Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.38Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C'' | H'' | sing | 1.09Å | 1.10Å | |
| C'' | H5X | sing | 1.09Å | 1.10Å | |
| C'' | H5W | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | H5S | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CMC | HMC | sing | 1.09Å | 1.10Å | |
| CMC | H5U | sing | 1.09Å | 1.10Å | |
| CMC | H5V | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 111.5° | 110.5° |
| O3' | C3' | C2' | 109.2° | 110.5° |
| O3' | C3' | H3' | 112.0° | 110.5° |
| C3' | O3' | H1 | 109.5° | 114.0° |
| OP1 | P | OP2 | 119.7° | 109.5° |
| OP1 | P | O5' | 111.1° | 109.5° |
| P | OP1 | H2 | 109.5° | 114.0° |
| OP1 | P | OP3 | 104.8° | 109.5° |
| C4' | C3' | C2' | 102.5° | 104.2° |
| C3' | C4' | C5' | 116.6° | 109.9° |
| C3' | C4' | OCM | 106.9° | 109.8° |
| C3' | C4' | O4' | 104.3° | 107.3° |
| C4' | C3' | H3' | 110.7° | 110.5° |
| C3' | C2' | O2' | 111.7° | 110.9° |
| C3' | C2' | C1' | 101.3° | 102.1° |
| C3' | C2' | H2' | 111.3° | 111.0° |
| C2' | C3' | H3' | 110.5° | 110.5° |
| OP2 | P | O5' | 106.3° | 109.5° |
| OP2 | P | OP3 | 110.1° | 109.4° |
| P | O5' | C5' | 122.3° | 123.0° |
| O5' | P | OP3 | 103.8° | 109.5° |
| O5' | C5' | C4' | 101.8° | 109.5° |
| O5' | C5' | H5S | 111.4° | 109.5° |
| O5' | C5' | H5' | 111.3° | 109.5° |
| C5' | C4' | OCM | 103.0° | 109.9° |
| C5' | C4' | O4' | 115.6° | 110.0° |
| C4' | C5' | H5S | 111.3° | 109.5° |
| C4' | C5' | H5' | 111.4° | 109.5° |
| OCM | C4' | O4' | 110.1° | 109.9° |
| C4' | OCM | CMC | 110.2° | 114.0° |
| C4' | O4' | C1' | 106.9° | 107.0° |
| O2' | C2' | C1' | 108.4° | 110.9° |
| C2' | O2' | C'' | 105.0° | 114.0° |
| O2' | C2' | H2' | 111.9° | 110.8° |
| C2' | C1' | O4' | 107.4° | 103.5° |
| C2' | C1' | N1 | 116.9° | 110.6° |
| C2' | C1' | H1' | 109.5° | 110.7° |
| C1' | C2' | H2' | 111.8° | 110.9° |
| OCM | CMC | HMC | 109.5° | 109.5° |
| OCM | CMC | H5U | 109.4° | 109.4° |
| OCM | CMC | H5V | 109.5° | 109.5° |
| O2' | C'' | H'' | 109.5° | 109.5° |
| O2' | C'' | H5X | 109.5° | 109.5° |
| O2' | C'' | H5W | 109.5° | 109.5° |
| C5 | C6 | N1 | 119.8° | 119.6° |
| C6 | C5 | C4 | 118.1° | 119.1° |
| C6 | C5 | H5 | 121.0° | 120.4° |
| C5 | C6 | H6 | 120.1° | 120.2° |
| C6 | N1 | C1' | 122.3° | 119.7° |
| C6 | N1 | C2 | 121.0° | 120.6° |
| N1 | C6 | H6 | 120.1° | 120.2° |
| O4' | C1' | N1 | 104.0° | 110.6° |
| O4' | C1' | H1' | 109.3° | 110.7° |
| C1' | N1 | C2 | 116.6° | 119.7° |
| N1 | C1' | H1' | 109.5° | 110.6° |
| C5 | C4 | O4 | 122.7° | 120.3° |
| C5 | C4 | N3 | 120.2° | 119.4° |
| C4 | C5 | H5 | 121.0° | 120.5° |
| N1 | C2 | N3 | 119.9° | 120.9° |
| N1 | C2 | O2 | 121.4° | 119.5° |
| O4 | C4 | N3 | 117.0° | 120.3° |
| C4 | N3 | C2 | 121.1° | 120.3° |
| C4 | N3 | H3 | 119.5° | 119.9° |
| N3 | C2 | O2 | 118.8° | 119.5° |
| C2 | N3 | H3 | 119.5° | 119.9° |
| H'' | C'' | H5X | 109.5° | 109.5° |
| H'' | C'' | H5W | 109.4° | 109.5° |
| H5X | C'' | H5W | 109.5° | 109.5° |
| H5S | C5' | H5' | 109.5° | 109.5° |
| HMC | CMC | H5U | 109.5° | 109.4° |
| HMC | CMC | H5V | 109.5° | 109.5° |
| H5U | CMC | H5V | 109.5° | 109.5° |
| P | OP3 | HOP3 | 109.5° | 113.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | C2' | 116.7° | 118.7° |
| O3' | C3' | C4' | H3' | 125.4° | 122.6° |
| O3' | C3' | C2' | H3' | 123.6° | 122.7° |
| O3' | C3' | C4' | C5' | 74.9° | 119.7° |
| O3' | C3' | C4' | OCM | 39.7° | 1.3° |
| O3' | C3' | C4' | O4' | 156.3° | 120.7° |
| O3' | C3' | C2' | O2' | 43.6° | 20.4° |
| O3' | C3' | C2' | C1' | 158.7° | 97.8° |
| O3' | C3' | C2' | H2' | 82.3° | 144.0° |
| OP1 | P | OP2 | O5' | 126.7° | 120.0° |
| OP1 | P | OP2 | OP3 | 121.4° | 120.0° |
| OP1 | P | O5' | OP3 | 112.1° | 120.1° |
| OP1 | P | O5' | C5' | 47.9° | 175.0° |
| OP1 | P | OP3 | HOP3 | 130.0° | 60.1° |
| C4' | C3' | C2' | H3' | 118.1° | 118.7° |
| C3' | C4' | C5' | O5' | 65.1° | 174.1° |
| C3' | C4' | C5' | OCM | 116.7° | 121.0° |
| C3' | C4' | C5' | O4' | 123.1° | 117.9° |
| C3' | C4' | OCM | O4' | 112.7° | 117.8° |
| C4' | C3' | C2' | O2' | 74.8° | 139.1° |
| C4' | C3' | C2' | C1' | 40.3° | 20.9° |
| C3' | C4' | OCM | CMC | 157.2° | 176.3° |
| C3' | C4' | O4' | C1' | 22.7° | 26.6° |
| C4' | C3' | C2' | H2' | 159.3° | 97.3° |
| C3' | C4' | C5' | H5S | 53.7° | 65.9° |
| C3' | C4' | C5' | H5' | 176.2° | 54.1° |
| C4' | C3' | O3' | H1 | 180.0° | 180.0° |
| C2' | C3' | C4' | C5' | 168.4° | 121.6° |
| C2' | C3' | C4' | OCM | 77.0° | 117.4° |
| C2' | C3' | C4' | O4' | 39.6° | 2.0° |
| C3' | C2' | O2' | C1' | 110.7° | 112.7° |
| C3' | C2' | O2' | H2' | 125.5° | 123.7° |
| C3' | C2' | C1' | H2' | 118.6° | 118.3° |
| C3' | C2' | O2' | C'' | 169.2° | 155.8° |
| C3' | C2' | C1' | O4' | 27.0° | 37.1° |
| C3' | C2' | C1' | N1 | 89.2° | 155.5° |
| C3' | C2' | C1' | H1' | 145.6° | 81.5° |
| C2' | C3' | O3' | H1 | 67.4° | 65.2° |
| OP2 | P | O5' | OP3 | 116.1° | 120.0° |
| OP2 | P | O5' | C5' | 179.6° | 55.0° |
| OP2 | P | OP1 | H2 | 0.0° | 60.1° |
| OP2 | P | OP3 | HOP3 | 0.0° | 180.0° |
| P | O5' | C5' | C4' | 160.4° | 180.0° |
| P | O5' | C5' | H5S | 80.9° | 60.0° |
| P | O5' | C5' | H5' | 41.6° | 60.0° |
| O5' | P | OP1 | H2 | 124.5° | 180.0° |
| O5' | P | OP3 | HOP3 | 113.4° | 60.0° |
| O5' | C5' | C4' | H5S | 118.7° | 120.0° |
| O5' | C5' | C4' | H5' | 118.7° | 120.0° |
| O5' | C5' | C4' | OCM | 178.2° | 64.9° |
| O5' | C5' | C4' | O4' | 58.1° | 56.2° |
| O5' | C5' | H5S | H5' | 123.6° | 120.0° |
| C5' | O5' | P | OP3 | 64.3° | 65.0° |
| C5' | C4' | OCM | O4' | 123.9° | 121.2° |
| C5' | C4' | OCM | CMC | 79.4° | 62.7° |
| C5' | C4' | O4' | C1' | 152.1° | 146.0° |
| C5' | C4' | C3' | H3' | 50.5° | 2.9° |
| C4' | C5' | H5S | H5' | 123.6° | 120.0° |
| OCM | C4' | O4' | C1' | 91.7° | 92.8° |
| OCM | C4' | C3' | H3' | 165.0° | 123.9° |
| OCM | C4' | C5' | H5S | 63.1° | 55.0° |
| OCM | C4' | C5' | H5' | 59.4° | 175.0° |
| C4' | OCM | CMC | HMC | 180.0° | 172.8° |
| C4' | OCM | CMC | H5U | 60.0° | 67.3° |
| C4' | OCM | CMC | H5V | 60.0° | 52.7° |
| C4' | O4' | C1' | C2' | 3.1° | 40.1° |
| O4' | C4' | OCM | CMC | 44.5° | 58.5° |
| C4' | O4' | C1' | N1 | 121.3° | 158.6° |
| C4' | O4' | C1' | H1' | 121.8° | 78.5° |
| O4' | C4' | C3' | H3' | 78.4° | 116.6° |
| O4' | C4' | C5' | H5S | 176.8° | 176.2° |
| O4' | C4' | C5' | H5' | 60.7° | 63.8° |
| O2' | C2' | C1' | H2' | 123.8° | 123.6° |
| O2' | C2' | C1' | O4' | 90.5° | 155.2° |
| O2' | C2' | C1' | N1 | 153.2° | 86.3° |
| C2' | O2' | C'' | H'' | 180.0° | 180.0° |
| C2' | O2' | C'' | H5X | 60.0° | 60.0° |
| C2' | O2' | C'' | H5W | 60.0° | 60.0° |
| O2' | C2' | C1' | H1' | 28.0° | 36.7° |
| O2' | C2' | C3' | H3' | 167.1° | 102.3° |
| C1' | C2' | O2' | C'' | 80.1° | 91.5° |
| C2' | C1' | N1 | C6 | 97.5° | 119.5° |
| C2' | C1' | O4' | N1 | 124.4° | 118.5° |
| C2' | C1' | O4' | H1' | 118.7° | 118.6° |
| C2' | C1' | N1 | H1' | 125.2° | 123.0° |
| C2' | C1' | N1 | C2 | 85.3° | 60.5° |
| C1' | C2' | C3' | H3' | 77.7° | 139.6° |
| OCM | CMC | HMC | H5U | 120.0° | 120.0° |
| OCM | CMC | HMC | H5V | 120.0° | 120.1° |
| OCM | CMC | H5U | H5V | 120.0° | 120.0° |
| O2' | C'' | H'' | H5X | 120.0° | 120.0° |
| O2' | C'' | H'' | H5W | 120.0° | 120.0° |
| O2' | C'' | H5X | H5W | 120.0° | 120.0° |
| C'' | O2' | C2' | H2' | 43.6° | 32.1° |
| C5 | C6 | N1 | H6 | 180.0° | 179.2° |
| C5 | C6 | N1 | C1' | 177.2° | 179.5° |
| C6 | C5 | C4 | H5 | 180.0° | 179.5° |
| C5 | C6 | N1 | C2 | 0.1° | 0.5° |
| C6 | C5 | C4 | O4 | 179.0° | 179.5° |
| C6 | C5 | C4 | N3 | 0.1° | 0.5° |
| C6 | N1 | C1' | O4' | 20.6° | 126.5° |
| C6 | N1 | C1' | C2 | 177.2° | 180.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.8° |
| C6 | N1 | C2 | N3 | 0.0° | 0.0° |
| C6 | N1 | C2 | O2 | 179.9° | 179.8° |
| C6 | N1 | C1' | H1' | 137.3° | 3.5° |
| N1 | C6 | C5 | H5 | 179.8° | 179.7° |
| O4' | C1' | N1 | H1' | 116.7° | 123.0° |
| O4' | C1' | N1 | C2 | 156.7° | 53.5° |
| O4' | C1' | C2' | H2' | 145.6° | 81.2° |
| C1' | N1 | C2 | N3 | 177.3° | 180.0° |
| C1' | N1 | C2 | O2 | 2.8° | 0.2° |
| N1 | C1' | C2' | H2' | 29.4° | 37.3° |
| C1' | N1 | C6 | H6 | 2.8° | 0.3° |
| C5 | C4 | O4 | N3 | 179.2° | 179.9° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| C4 | C5 | C6 | H6 | 179.8° | 180.0° |
| C5 | C4 | N3 | H3 | 179.9° | 180.0° |
| N1 | C2 | N3 | C4 | 0.0° | 0.2° |
| N1 | C2 | N3 | O2 | 179.9° | 179.8° |
| C2 | N1 | C1' | H1' | 39.9° | 176.5° |
| C2 | N1 | C6 | H6 | 179.9° | 179.7° |
| N1 | C2 | N3 | H3 | 180.0° | 179.7° |
| O4 | C4 | N3 | C2 | 179.2° | 180.0° |
| O4 | C4 | C5 | H5 | 1.0° | 0.0° |
| O4 | C4 | N3 | H3 | 0.9° | 0.1° |
| C4 | N3 | C2 | H3 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| N3 | C4 | C5 | H5 | 179.8° | 179.9° |
| O2 | C2 | N3 | H3 | 0.1° | 0.1° |
| H'' | C'' | H5X | H5W | 120.0° | 120.0° |
| H1' | C1' | C2' | H2' | 95.8° | 160.2° |
| H2' | C2' | C3' | H3' | 41.2° | 21.3° |
| H3' | C3' | O3' | H1 | 55.4° | 57.4° |
| H5 | C5 | C6 | H6 | 0.2° | 0.5° |
| HMC | CMC | H5U | H5V | 120.0° | 120.0° |
| H2 | OP1 | P | OP3 | 124.0° | 59.9° |
