UMX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP2	P	doub	1.48Å	1.56Å
O5'	P	sing	1.61Å	1.58Å
P	OP1	sing	1.61Å	1.57Å
P	OP3	sing	1.61Å	1.61Å
C2	N1	sing	1.35Å	1.36Å
C6	N1	sing	1.37Å	1.35Å
N1	C1'	sing	1.47Å	1.47Å
N3	C2	sing	1.35Å	1.36Å
C2	O2	doub	1.22Å	1.27Å
C4	N3	sing	1.35Å	1.32Å
O4	C4	doub	1.22Å	1.23Å
C4	C5	sing	1.42Å	1.44Å
C5	C6	doub	1.35Å	1.36Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C2'	C1'	sing	1.56Å	1.52Å
C1'	O4'	sing	1.44Å	1.43Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	C3'	sing	1.57Å	1.48Å
C2'	C6'	sing	1.56Å	1.51Å
C2'	H2'	sing	1.09Å	1.10Å
O3'	C3'	sing	1.43Å	1.47Å
C3'	C4'	sing	1.57Å	1.51Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
O4'	C4'	sing	1.45Å	1.44Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	C8'	sing	1.56Å	1.53Å
O5'	C5'	sing	1.43Å	1.45Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C7'	C6'	sing	1.53Å	1.50Å
C6'	C8'	sing	1.55Å	1.54Å
C6'	H6'	sing	1.09Å	1.10Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C7'	H7'B	sing	1.09Å	1.10Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
OP1	HOP1	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å
N3	HN3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP2	P	O5'	103.3°	109.5°
OP2	P	OP1	117.7°	109.5°
OP2	P	OP3	112.8°	109.5°
O5'	P	OP1	109.7°	109.5°
O5'	P	OP3	103.5°	109.4°
P	O5'	C5'	120.1°	123.0°
OP1	P	OP3	108.7°	109.5°
P	OP1	HOP1	109.5°	114.0°
P	OP3	HOP3	109.5°	114.0°
C2	N1	C6	119.0°	120.6°
C2	N1	C1'	118.5°	119.7°
N1	C2	N3	121.7°	121.0°
N1	C2	O2	118.8°	119.5°
C6	N1	C1'	122.5°	119.7°
N1	C6	C5	120.9°	119.7°
N1	C6	H6	119.6°	120.1°
N1	C1'	C2'	115.8°	110.2°
N1	C1'	O4'	109.2°	110.2°
N1	C1'	H1'	104.1°	110.2°
N3	C2	O2	119.5°	119.5°
C2	N3	C4	120.9°	120.2°
C2	N3	HN3	119.5°	119.9°
N3	C4	O4	120.6°	120.3°
N3	C4	C5	118.7°	119.4°
C4	N3	HN3	119.6°	119.8°
O4	C4	C5	120.7°	120.3°
C4	C5	C6	118.8°	119.1°
C4	C5	H5	120.6°	120.4°
C6	C5	H5	120.6°	120.5°
C5	C6	H6	119.5°	120.2°
C2'	C1'	O4'	105.3°	105.6°
C2'	C1'	H1'	108.0°	110.3°
C1'	C2'	C3'	96.7°	98.8°
C1'	C2'	C6'	101.8°	103.6°
C1'	C2'	H2'	120.3°	116.7°
O4'	C1'	H1'	114.8°	110.2°
C1'	O4'	C4'	104.9°	107.9°
C3'	C2'	C6'	106.1°	100.4°
C3'	C2'	H2'	116.8°	117.0°
C2'	C3'	O3'	114.9°	112.3°
C2'	C3'	C4'	94.7°	94.7°
C2'	C3'	H3'	115.8°	112.3°
C6'	C2'	H2'	112.7°	117.3°
C2'	C6'	C7'	115.1°	110.5°
C2'	C6'	C8'	103.9°	103.8°
C2'	C6'	H6'	110.4°	110.6°
O3'	C3'	C4'	110.2°	112.3°
O3'	C3'	H3'	101.8°	112.0°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	120.1°	112.3°
C3'	C4'	O4'	100.7°	101.4°
C3'	C4'	C5'	114.8°	115.9°
C3'	C4'	C8'	103.0°	100.8°
O4'	C4'	C5'	110.5°	116.2°
O4'	C4'	C8'	107.9°	104.7°
C5'	C4'	C8'	118.3°	115.6°
C4'	C5'	O5'	108.2°	109.5°
C4'	C5'	H5'	109.9°	109.5°
C4'	C5'	H5'A	109.9°	109.5°
C4'	C8'	C6'	100.7°	104.4°
C4'	C8'	H8'	112.5°	110.5°
C4'	C8'	H8'A	112.5°	110.5°
O5'	C5'	H5'	109.9°	109.5°
O5'	C5'	H5'A	109.9°	109.4°
H5'	C5'	H5'A	109.0°	109.5°
C7'	C6'	C8'	111.7°	110.5°
C7'	C6'	H6'	102.3°	110.6°
C6'	C7'	H7'	109.5°	109.5°
C6'	C7'	H7'A	109.5°	109.4°
C6'	C7'	H7'B	109.5°	109.4°
C8'	C6'	H6'	113.8°	110.6°
C6'	C8'	H8'	112.5°	110.4°
C6'	C8'	H8'A	112.5°	110.4°
H7'	C7'	H7'A	109.5°	109.5°
H7'	C7'	H7'B	109.5°	109.5°
H7'A	C7'	H7'B	109.5°	109.4°
H8'	C8'	H8'A	106.3°	110.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP2	P	O5'	OP1	126.4°	120.0°
OP2	P	O5'	OP3	117.7°	120.0°
OP2	P	OP1	OP3	129.8°	120.0°
OP2	P	O5'	C5'	170.9°	55.0°
OP2	P	OP1	HOP1	0.0°	180.0°
OP2	P	OP3	HOP3	0.0°	60.0°
O5'	P	OP1	OP3	112.6°	120.0°
P	O5'	C5'	C4'	161.1°	180.0°
P	O5'	C5'	H5'	41.1°	60.0°
P	O5'	C5'	H5'A	78.9°	60.0°
O5'	P	OP1	HOP1	117.6°	60.0°
O5'	P	OP3	HOP3	110.9°	180.0°
OP1	P	O5'	C5'	44.5°	65.0°
OP1	P	OP3	HOP3	132.5°	60.0°
OP3	P	O5'	C5'	71.4°	175.0°
OP3	P	OP1	HOP1	129.8°	60.0°
C2	N1	C6	C1'	177.9°	179.7°
N1	C2	N3	O2	179.6°	180.0°
N1	C2	N3	C4	1.0°	0.0°
C2	N1	C6	C5	0.5°	0.6°
C2	N1	C6	H6	179.5°	180.0°
C2	N1	C1'	C2'	83.1°	85.5°
C2	N1	C1'	O4'	158.3°	158.3°
C2	N1	C1'	H1'	35.3°	36.4°
N1	C2	N3	HN3	179.0°	180.0°
C6	N1	C2	N3	0.9°	0.3°
C6	N1	C2	O2	179.5°	179.7°
N1	C6	C5	C4	1.8°	0.5°
N1	C6	C5	H6	180.0°	179.4°
N1	C6	C5	H5	178.2°	179.6°
C6	N1	C1'	C2'	99.0°	94.8°
C6	N1	C1'	O4'	19.6°	21.3°
C6	N1	C1'	H1'	142.6°	143.2°
C1'	N1	C2	N3	177.1°	180.0°
C1'	N1	C2	O2	2.5°	0.0°
C1'	N1	C6	C5	178.4°	179.7°
C1'	N1	C6	H6	1.6°	0.3°
N1	C1'	C2'	O4'	120.7°	119.0°
N1	C1'	C2'	H1'	116.2°	121.9°
N1	C1'	O4'	H1'	116.4°	121.9°
N1	C1'	C2'	C3'	82.4°	86.8°
N1	C1'	C2'	C6'	169.6°	170.2°
N1	C1'	C2'	H2'	44.2°	39.6°
N1	C1'	O4'	C4'	121.9°	120.4°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	O4	178.2°	180.0°
C2	N3	C4	C5	0.3°	0.1°
O2	C2	N3	C4	179.4°	180.0°
O2	C2	N3	HN3	0.6°	0.0°
N3	C4	O4	C5	177.9°	179.9°
N3	C4	C5	C6	1.6°	0.2°
N3	C4	C5	H5	178.4°	180.0°
O4	C4	C5	C6	179.6°	179.7°
O4	C4	C5	H5	0.4°	0.1°
O4	C4	N3	HN3	1.8°	0.1°
C4	C5	C6	H5	180.0°	179.8°
C4	C5	C6	H6	178.2°	179.9°
C5	C4	N3	HN3	179.7°	180.0°
H5	C5	C6	H6	1.8°	0.3°
C2'	C1'	O4'	H1'	118.7°	119.1°
C1'	C2'	C3'	C6'	104.4°	105.7°
C1'	C2'	C3'	H2'	129.0°	126.1°
C1'	C2'	C6'	H2'	130.3°	130.2°
C1'	C2'	C3'	O3'	170.7°	166.4°
C1'	C2'	C3'	C4'	55.8°	50.0°
C1'	C2'	C3'	H3'	71.0°	66.4°
C2'	C1'	O4'	C4'	3.1°	1.4°
C1'	C2'	C6'	C7'	162.0°	175.8°
C1'	C2'	C6'	C8'	75.5°	65.6°
C1'	C2'	C6'	H6'	46.9°	53.0°
O4'	C1'	C2'	C3'	38.3°	32.2°
O4'	C1'	C2'	C6'	69.7°	70.8°
O4'	C1'	C2'	H2'	164.9°	158.6°
C1'	O4'	C4'	C3'	33.0°	34.9°
C1'	O4'	C4'	C5'	154.8°	161.6°
C1'	O4'	C4'	C8'	74.6°	69.5°
H1'	C1'	C2'	C3'	161.4°	151.3°
H1'	C1'	C2'	C6'	53.4°	48.3°
H1'	C1'	C2'	H2'	72.0°	82.3°
H1'	C1'	O4'	C4'	121.7°	117.7°
C3'	C2'	C6'	H2'	129.0°	128.0°
C2'	C3'	O3'	C4'	105.5°	105.2°
C2'	C3'	O3'	H3'	126.0°	127.4°
C2'	C3'	C4'	H3'	123.5°	116.4°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	56.5°	52.7°
C2'	C3'	C4'	C5'	175.2°	179.5°
C2'	C3'	C4'	C8'	54.8°	54.8°
C3'	C2'	C6'	C7'	97.4°	82.4°
C3'	C2'	C6'	C8'	25.1°	36.1°
C3'	C2'	C6'	H6'	147.5°	154.7°
C6'	C2'	C3'	O3'	66.2°	60.7°
C6'	C2'	C3'	C4'	48.6°	55.7°
C6'	C2'	C3'	H3'	175.4°	172.1°
C2'	C6'	C8'	C4'	9.6°	1.4°
C2'	C6'	C7'	C8'	118.2°	114.4°
C2'	C6'	C7'	H6'	119.7°	122.8°
C2'	C6'	C8'	H6'	120.1°	118.6°
C2'	C6'	C7'	H7'	180.0°	60.0°
C2'	C6'	C7'	H7'A	60.0°	180.0°
C2'	C6'	C7'	H7'B	60.0°	60.1°
C2'	C6'	C8'	H8'	110.4°	120.1°
C2'	C6'	C8'	H8'A	129.6°	117.4°
H2'	C2'	C3'	O3'	60.3°	67.5°
H2'	C2'	C3'	C4'	175.2°	176.1°
H2'	C2'	C3'	H3'	58.0°	59.7°
H2'	C2'	C6'	C7'	31.6°	45.6°
H2'	C2'	C6'	C8'	154.1°	164.1°
H2'	C2'	C6'	H6'	83.5°	77.3°
O3'	C3'	C4'	H3'	117.7°	127.2°
O3'	C3'	C4'	O4'	175.3°	169.1°
O3'	C3'	C4'	C5'	66.1°	64.1°
O3'	C3'	C4'	C8'	63.9°	61.6°
C4'	C3'	O3'	HO3'	74.5°	166.7°
C3'	C4'	O4'	C5'	121.8°	126.6°
C3'	C4'	O4'	C8'	107.5°	104.5°
C3'	C4'	C5'	C8'	122.1°	117.7°
C3'	C4'	C5'	O5'	53.9°	175.0°
C3'	C4'	C5'	H5'	173.9°	55.0°
C3'	C4'	C5'	H5'A	66.0°	65.0°
C3'	C4'	C8'	C6'	40.7°	34.0°
C3'	C4'	C8'	H8'	79.3°	84.8°
C3'	C4'	C8'	H8'A	160.7°	152.7°
H3'	C3'	O3'	HO3'	54.0°	65.9°
H3'	C3'	C4'	O4'	67.0°	63.7°
H3'	C3'	C4'	C5'	51.6°	63.1°
H3'	C3'	C4'	C8'	178.4°	171.2°
O4'	C4'	C5'	C8'	124.9°	123.4°
O4'	C4'	C5'	O5'	59.1°	66.1°
O4'	C4'	C5'	H5'	60.9°	173.9°
O4'	C4'	C5'	H5'A	179.0°	53.9°
O4'	C4'	C8'	C6'	65.2°	71.0°
O4'	C4'	C8'	H8'	174.8°	170.3°
O4'	C4'	C8'	H8'A	54.8°	47.8°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	120.6°	120.0°
C5'	C4'	C8'	C6'	168.6°	159.8°
C5'	C4'	C8'	H8'	48.6°	41.1°
C5'	C4'	C8'	H8'A	71.4°	81.4°
C8'	C4'	C5'	O5'	176.0°	57.3°
C8'	C4'	C5'	H5'	64.0°	62.7°
C8'	C4'	C5'	H5'A	56.0°	177.3°
C4'	C8'	C6'	C7'	134.3°	117.2°
C4'	C8'	C6'	H8'	120.0°	118.8°
C4'	C8'	C6'	H8'A	120.0°	118.7°
C4'	C8'	C6'	H6'	110.5°	120.0°
C4'	C8'	H8'	H8'A	123.5°	122.5°
O5'	C5'	H5'	H5'A	120.5°	120.0°
C7'	C6'	C8'	H6'	115.2°	122.8°
C6'	C7'	H7'	H7'A	120.0°	120.0°
C6'	C7'	H7'	H7'B	120.0°	120.0°
C6'	C7'	H7'A	H7'B	120.0°	119.9°
C7'	C6'	C8'	H8'	14.3°	1.6°
C7'	C6'	C8'	H8'A	105.7°	124.1°
C8'	C6'	C7'	H7'	61.9°	54.4°
C8'	C6'	C7'	H7'A	178.2°	65.6°
C8'	C6'	C7'	H7'B	58.2°	174.5°
C6'	C8'	H8'	H8'A	123.5°	122.5°
H6'	C6'	C7'	H7'	60.3°	177.2°
H6'	C6'	C7'	H7'A	59.7°	57.2°
H6'	C6'	C7'	H7'B	179.7°	62.7°
H6'	C6'	C8'	H8'	129.5°	121.3°
H6'	C6'	C8'	H8'A	9.5°	1.2°
H7'	C7'	H7'A	H7'B	120.0°	120.1°

Definition date:	2010-10-11
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3OZ5