UMS
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 14.89Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.45Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.54Å | |
| C5' | C4' | sing | 1.53Å | 1.44Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.51Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.51Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | SE2' | sing | 1.96Å | 2.00Å | |
| C2' | C1' | sing | 1.54Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| SE2' | CA' | sing | 1.96Å | 2.03Å | |
| C1' | N1 | sing | 1.47Å | 1.51Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| CA' | HA' | sing | 1.09Å | 1.10Å | |
| CA' | HA'2 | sing | 1.09Å | 1.10Å | |
| CA' | HA'3 | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.35Å | 1.36Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.35Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.35Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.24Å | |
| C4 | C5 | sing | 1.42Å | 1.44Å | |
| C5 | C6 | doub | 1.35Å | 1.37Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 125.6° | 114.0° |
| OP3 | P | OP1 | 125.6° | 109.5° |
| OP3 | P | OP2 | 66.7° | 109.5° |
| OP3 | P | O5' | 43.5° | 109.5° |
| OP1 | P | OP2 | 117.4° | 109.5° |
| OP1 | P | O5' | 110.9° | 109.4° |
| OP2 | P | O5' | 109.4° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| P | O5' | C5' | 119.5° | 123.0° |
| O5' | C5' | C4' | 105.1° | 109.5° |
| O5' | C5' | H5' | 111.0° | 109.5° |
| O5' | C5' | H5'2 | 111.9° | 109.5° |
| C4' | C5' | H5' | 110.9° | 109.5° |
| C4' | C5' | H5'2 | 111.9° | 109.4° |
| C5' | C4' | O4' | 108.9° | 110.6° |
| C5' | C4' | C3' | 121.4° | 110.6° |
| C5' | C4' | H4' | 98.6° | 110.6° |
| H5' | C5' | H5'2 | 106.2° | 109.5° |
| O4' | C4' | C3' | 97.0° | 103.5° |
| O4' | C4' | H4' | 122.4° | 110.6° |
| C4' | O4' | C1' | 108.6° | 107.0° |
| C3' | C4' | H4' | 110.2° | 110.8° |
| C4' | C3' | O3' | 109.7° | 110.9° |
| C4' | C3' | C2' | 107.3° | 102.1° |
| C4' | C3' | H3' | 111.5° | 110.9° |
| O4' | C1' | C2' | 111.4° | 107.3° |
| O4' | C1' | N1 | 105.9° | 109.8° |
| O4' | C1' | H1' | 111.7° | 109.9° |
| O3' | C3' | C2' | 111.6° | 110.9° |
| O3' | C3' | H3' | 107.2° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| C2' | C3' | H3' | 109.6° | 110.9° |
| C3' | C2' | SE2' | 107.9° | 110.5° |
| C3' | C2' | C1' | 96.6° | 104.1° |
| C3' | C2' | H2' | 117.4° | 110.5° |
| SE2' | C2' | C1' | 106.7° | 110.5° |
| SE2' | C2' | H2' | 108.8° | 110.5° |
| C2' | SE2' | CA' | 93.8° | 101.0° |
| C1' | C2' | H2' | 118.4° | 110.6° |
| C2' | C1' | N1 | 112.6° | 109.8° |
| C2' | C1' | H1' | 104.9° | 109.9° |
| SE2' | CA' | HA' | 109.5° | 109.5° |
| SE2' | CA' | HA'2 | 109.4° | 109.5° |
| SE2' | CA' | HA'3 | 109.5° | 109.5° |
| N1 | C1' | H1' | 110.5° | 110.0° |
| C1' | N1 | C2 | 117.0° | 119.6° |
| C1' | N1 | C6 | 119.5° | 119.7° |
| HA' | CA' | HA'2 | 109.5° | 109.4° |
| HA' | CA' | HA'3 | 109.4° | 109.4° |
| HA'2 | CA' | HA'3 | 109.5° | 109.5° |
| C2 | N1 | C6 | 123.5° | 120.6° |
| N1 | C2 | O2 | 124.3° | 119.6° |
| N1 | C2 | N3 | 111.8° | 120.9° |
| N1 | C6 | C5 | 120.8° | 119.7° |
| N1 | C6 | H6 | 119.6° | 120.2° |
| O2 | C2 | N3 | 123.8° | 119.5° |
| C2 | N3 | C4 | 131.7° | 120.3° |
| C2 | N3 | H3 | 114.2° | 119.9° |
| C4 | N3 | H3 | 114.2° | 119.9° |
| N3 | C4 | O4 | 122.0° | 120.3° |
| N3 | C4 | C5 | 112.6° | 119.4° |
| O4 | C4 | C5 | 125.4° | 120.3° |
| C4 | C5 | C6 | 119.5° | 119.1° |
| C4 | C5 | H5 | 120.3° | 120.4° |
| C6 | C5 | H5 | 120.3° | 120.5° |
| C5 | C6 | H6 | 119.6° | 120.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 79.8° | 120.0° |
| OP3 | P | OP1 | O5' | 47.0° | 120.0° |
| OP3 | P | OP2 | O5' | 8.1° | 120.0° |
| OP3 | P | OP2 | HOP2 | 20.5° | 60.0° |
| OP3 | P | O5' | C5' | 169.8° | 65.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 180.0° |
| HOP3 | OP3 | P | OP2 | 72.1° | 60.0° |
| HOP3 | OP3 | P | O5' | 96.7° | 60.0° |
| OP1 | P | OP2 | O5' | 127.5° | 119.9° |
| OP1 | P | OP2 | HOP2 | 98.9° | 60.0° |
| OP1 | P | O5' | C5' | 49.7° | 55.1° |
| OP2 | P | O5' | C5' | 179.3° | 175.0° |
| O5' | P | OP2 | HOP2 | 28.6° | 180.0° |
| P | O5' | C5' | C4' | 174.4° | 180.0° |
| P | O5' | C5' | H5' | 65.6° | 60.0° |
| P | O5' | C5' | H5'2 | 52.8° | 60.1° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 121.6° | 120.0° |
| O5' | C5' | H5' | H5'2 | 121.8° | 120.0° |
| O5' | C5' | C4' | O4' | 66.4° | 66.5° |
| O5' | C5' | C4' | C3' | 44.8° | 179.5° |
| O5' | C5' | C4' | H4' | 164.9° | 56.4° |
| C4' | C5' | H5' | H5'2 | 121.8° | 120.0° |
| C5' | C4' | O4' | C3' | 126.7° | 118.5° |
| C5' | C4' | O4' | H4' | 113.9° | 122.9° |
| C5' | C4' | C3' | H4' | 114.4° | 123.0° |
| C5' | C4' | O4' | C1' | 152.6° | 158.6° |
| C5' | C4' | C3' | O3' | 78.7° | 86.3° |
| C5' | C4' | C3' | C2' | 159.9° | 155.5° |
| C5' | C4' | C3' | H3' | 39.9° | 37.3° |
| H5' | C5' | C4' | O4' | 173.6° | 53.5° |
| H5' | C5' | C4' | C3' | 75.2° | 60.5° |
| H5' | C5' | C4' | H4' | 44.9° | 176.4° |
| H5'2 | C5' | C4' | O4' | 55.3° | 173.5° |
| H5'2 | C5' | C4' | C3' | 166.4° | 59.5° |
| H5'2 | C5' | C4' | H4' | 73.4° | 63.6° |
| O4' | C4' | C3' | H4' | 128.4° | 118.5° |
| O4' | C4' | C3' | O3' | 164.0° | 155.2° |
| O4' | C4' | C3' | C2' | 42.6° | 37.0° |
| O4' | C4' | C3' | H3' | 77.4° | 81.2° |
| C4' | O4' | C1' | C2' | 1.6° | 26.6° |
| C4' | O4' | C1' | N1 | 124.2° | 145.9° |
| C4' | O4' | C1' | H1' | 115.4° | 92.9° |
| C3' | C4' | O4' | C1' | 25.9° | 40.1° |
| C4' | C3' | O3' | C2' | 118.8° | 112.7° |
| C4' | C3' | O3' | H3' | 121.2° | 123.6° |
| C4' | C3' | C2' | H3' | 121.2° | 118.3° |
| C4' | C3' | O3' | HO3' | 59.7° | 61.5° |
| C4' | C3' | C2' | SE2' | 68.6° | 97.8° |
| C4' | C3' | C2' | C1' | 41.3° | 20.9° |
| C4' | C3' | C2' | H2' | 168.1° | 139.7° |
| H4' | C4' | O4' | C1' | 93.5° | 78.6° |
| H4' | C4' | C3' | O3' | 35.6° | 36.7° |
| H4' | C4' | C3' | C2' | 85.8° | 81.5° |
| H4' | C4' | C3' | H3' | 154.2° | 160.2° |
| O4' | C1' | C2' | C3' | 23.9° | 2.1° |
| O4' | C1' | C2' | SE2' | 87.0° | 120.7° |
| O4' | C1' | C2' | N1 | 118.7° | 119.4° |
| O4' | C1' | C2' | H1' | 121.1° | 119.5° |
| O4' | C1' | C2' | H2' | 150.0° | 116.7° |
| O4' | C1' | N1 | H1' | 121.2° | 121.2° |
| O4' | C1' | N1 | C2 | 151.6° | 126.5° |
| O4' | C1' | N1 | C6 | 27.0° | 53.3° |
| O3' | C3' | C2' | H3' | 118.6° | 123.6° |
| O3' | C3' | C2' | SE2' | 51.6° | 20.4° |
| O3' | C3' | C2' | C1' | 161.5° | 139.0° |
| O3' | C3' | C2' | H2' | 71.7° | 102.1° |
| C2' | C3' | O3' | HO3' | 178.5° | 174.2° |
| C3' | C2' | SE2' | C1' | 102.9° | 114.7° |
| C3' | C2' | SE2' | H2' | 128.3° | 122.5° |
| C3' | C2' | C1' | H2' | 126.1° | 118.7° |
| C3' | C2' | SE2' | CA' | 171.8° | 61.5° |
| C3' | C2' | C1' | N1 | 94.8° | 121.4° |
| C3' | C2' | C1' | H1' | 145.0° | 117.4° |
| H3' | C3' | O3' | HO3' | 61.5° | 62.2° |
| H3' | C3' | C2' | SE2' | 170.2° | 144.0° |
| H3' | C3' | C2' | C1' | 79.9° | 97.4° |
| H3' | C3' | C2' | H2' | 46.9° | 21.5° |
| SE2' | C2' | C1' | H2' | 123.0° | 122.7° |
| SE2' | C2' | C1' | N1 | 154.3° | 119.9° |
| SE2' | C2' | C1' | H1' | 34.1° | 1.2° |
| C2' | SE2' | CA' | HA' | 114.2° | 60.0° |
| C2' | SE2' | CA' | HA'2 | 125.8° | 60.0° |
| C2' | SE2' | CA' | HA'3 | 5.8° | 179.9° |
| C1' | C2' | SE2' | CA' | 85.3° | 176.2° |
| C2' | C1' | N1 | H1' | 116.9° | 121.0° |
| C2' | C1' | N1 | C2 | 86.5° | 115.7° |
| C2' | C1' | N1 | C6 | 94.9° | 64.5° |
| H2' | C2' | SE2' | CA' | 43.4° | 61.1° |
| H2' | C2' | C1' | N1 | 31.3° | 2.7° |
| H2' | C2' | C1' | H1' | 88.9° | 123.8° |
| SE2' | CA' | HA' | HA'2 | 120.0° | 120.0° |
| SE2' | CA' | HA' | HA'3 | 120.0° | 120.0° |
| SE2' | CA' | HA'2 | HA'3 | 120.0° | 120.1° |
| C1' | N1 | C2 | C6 | 178.6° | 179.8° |
| C1' | N1 | C2 | O2 | 0.7° | 0.1° |
| C1' | N1 | C2 | N3 | 177.5° | 180.0° |
| C1' | N1 | C6 | C5 | 179.1° | 179.8° |
| C1' | N1 | C6 | H6 | 0.9° | 0.1° |
| H1' | C1' | N1 | C2 | 30.4° | 5.4° |
| H1' | C1' | N1 | C6 | 148.2° | 174.4° |
| HA' | CA' | HA'2 | HA'3 | 120.0° | 119.9° |
| N1 | C2 | O2 | N3 | 178.1° | 179.9° |
| N1 | C2 | N3 | C4 | 2.5° | 0.1° |
| N1 | C2 | N3 | H3 | 177.5° | 180.0° |
| C2 | N1 | C6 | C5 | 0.6° | 0.5° |
| C2 | N1 | C6 | H6 | 179.4° | 179.7° |
| C6 | N1 | C2 | O2 | 179.3° | 179.7° |
| C6 | N1 | C2 | N3 | 1.0° | 0.2° |
| N1 | C6 | C5 | C4 | 1.2° | 0.5° |
| N1 | C6 | C5 | H6 | 180.0° | 179.8° |
| N1 | C6 | C5 | H5 | 178.8° | 179.7° |
| O2 | C2 | N3 | C4 | 179.2° | 180.0° |
| O2 | C2 | N3 | H3 | 0.8° | 0.1° |
| C2 | N3 | C4 | H3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 177.3° | 180.0° |
| C2 | N3 | C4 | C5 | 2.0° | 0.1° |
| N3 | C4 | O4 | C5 | 179.2° | 179.9° |
| N3 | C4 | C5 | C6 | 0.1° | 0.2° |
| N3 | C4 | C5 | H5 | 179.9° | 180.0° |
| H3 | N3 | C4 | O4 | 2.7° | 0.1° |
| H3 | N3 | C4 | C5 | 178.0° | 180.0° |
| O4 | C4 | C5 | C6 | 179.3° | 179.7° |
| O4 | C4 | C5 | H5 | 0.7° | 0.1° |
| C4 | C5 | C6 | H5 | 180.0° | 179.8° |
| C4 | C5 | C6 | H6 | 178.8° | 179.7° |
| H5 | C5 | C6 | H6 | 1.2° | 0.1° |
