UMP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.35Å	1.37Å
N1	C6	sing	1.37Å	1.35Å
N1	C1'	sing	1.46Å	1.48Å
C2	N3	sing	1.35Å	1.38Å
C2	O2	doub	1.22Å	1.25Å
N3	C4	sing	1.35Å	1.37Å
N3	HN3	sing	0.97Å	1.00Å
C4	C5	sing	1.42Å	1.41Å
C4	O4	doub	1.22Å	1.25Å
C5	C6	doub	1.35Å	1.38Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C1'	C2'	sing	1.54Å	1.51Å
C1'	O4'	sing	1.44Å	1.42Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	C3'	sing	1.55Å	1.50Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2''	sing	1.09Å	1.10Å
C3'	C4'	sing	1.55Å	1.53Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	H3'	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.44Å
C4'	C5'	sing	1.53Å	1.49Å
C4'	H4'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C5'	O5'	sing	1.43Å	1.40Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
O5'	P	sing	1.61Å	1.58Å
P	OP1	doub	1.48Å	1.50Å
P	OP2	sing	1.61Å	1.50Å
P	OP3	sing	1.61Å	1.49Å
OP2	HOP2	sing	0.97Å	0.95Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	120.2°	120.6°
C2	N1	C1'	120.0°	119.7°
N1	C2	N3	118.0°	120.9°
N1	C2	O2	123.1°	119.6°
C6	N1	C1'	119.7°	119.7°
N1	C6	C5	121.7°	119.7°
N1	C6	H6	119.1°	120.1°
N1	C1'	C2'	112.7°	109.9°
N1	C1'	O4'	107.0°	109.9°
N1	C1'	H1'	109.8°	109.9°
N3	C2	O2	118.9°	119.5°
C2	N3	C4	123.8°	120.2°
C2	N3	HN3	118.1°	119.9°
C4	N3	HN3	118.1°	119.9°
N3	C4	C5	116.5°	119.4°
N3	C4	O4	118.4°	120.3°
C5	C4	O4	125.1°	120.3°
C4	C5	C6	119.7°	119.1°
C4	C5	H5	120.1°	120.4°
C6	C5	H5	120.2°	120.5°
C5	C6	H6	119.1°	120.1°
C2'	C1'	O4'	107.3°	107.3°
C2'	C1'	H1'	109.4°	109.8°
C1'	C2'	C3'	105.7°	104.2°
C1'	C2'	H2'	110.4°	110.5°
C1'	C2'	H2''	110.4°	110.5°
O4'	C1'	H1'	110.6°	110.0°
C1'	O4'	C4'	109.4°	107.0°
C3'	C2'	H2'	110.4°	110.5°
C3'	C2'	H2''	110.4°	110.5°
C2'	C3'	C4'	102.1°	102.1°
C2'	C3'	O3'	113.9°	110.9°
C2'	C3'	H3'	108.7°	110.9°
H2'	C2'	H2''	109.4°	110.5°
C4'	C3'	O3'	113.7°	110.9°
C4'	C3'	H3'	108.4°	110.9°
C3'	C4'	O4'	106.6°	103.5°
C3'	C4'	C5'	116.9°	110.6°
C3'	C4'	H4'	107.7°	110.6°
O3'	C3'	H3'	109.6°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
O4'	C4'	C5'	108.5°	110.6°
O4'	C4'	H4'	108.8°	110.6°
C5'	C4'	H4'	108.1°	110.7°
C4'	C5'	O5'	109.9°	109.5°
C4'	C5'	H5'	109.3°	109.4°
C4'	C5'	H5''	109.3°	109.5°
O5'	C5'	H5'	109.4°	109.5°
O5'	C5'	H5''	109.4°	109.5°
C5'	O5'	P	120.9°	123.0°
H5'	C5'	H5''	109.5°	109.5°
O5'	P	OP1	105.8°	109.5°
O5'	P	OP2	108.5°	109.5°
O5'	P	OP3	106.9°	109.4°
OP1	P	OP2	112.0°	109.5°
OP1	P	OP3	109.9°	109.5°
OP2	P	OP3	113.4°	109.4°
P	OP2	HOP2	109.5°	114.0°
P	OP3	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	177.5°	179.7°
N1	C2	N3	O2	179.2°	180.0°
N1	C2	N3	C4	1.0°	0.0°
N1	C2	N3	HN3	178.9°	180.0°
C2	N1	C6	C5	3.3°	0.0°
C2	N1	C6	H6	176.7°	180.0°
C2	N1	C1'	C2'	118.3°	115.0°
C2	N1	C1'	O4'	124.0°	127.2°
C2	N1	C1'	H1'	3.9°	5.9°
C6	N1	C2	N3	2.0°	0.0°
C6	N1	C2	O2	178.9°	180.0°
N1	C6	C5	C4	3.5°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	176.5°	180.0°
C6	N1	C1'	C2'	64.2°	65.3°
C6	N1	C1'	O4'	53.5°	52.6°
C6	N1	C1'	H1'	173.6°	173.8°
C1'	N1	C2	N3	179.5°	179.7°
C1'	N1	C2	O2	1.3°	0.3°
C1'	N1	C6	C5	179.2°	179.7°
C1'	N1	C6	H6	0.8°	0.2°
N1	C1'	C2'	O4'	117.6°	119.5°
N1	C1'	C2'	H1'	122.4°	121.0°
N1	C1'	O4'	H1'	119.5°	121.1°
N1	C1'	C2'	C3'	99.8°	121.5°
N1	C1'	C2'	H2'	140.7°	119.8°
N1	C1'	C2'	H2''	19.6°	2.8°
N1	C1'	O4'	C4'	122.0°	145.9°
C2	N3	C4	HN3	180.0°	180.0°
C2	N3	C4	C5	1.2°	0.1°
C2	N3	C4	O4	178.9°	180.0°
O2	C2	N3	C4	179.8°	180.0°
O2	C2	N3	HN3	0.2°	0.0°
N3	C4	C5	O4	177.5°	179.9°
N3	C4	C5	C6	2.3°	0.0°
N3	C4	C5	H5	177.7°	180.0°
HN3	N3	C4	C5	178.8°	180.0°
HN3	N3	C4	O4	1.0°	0.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	176.5°	180.0°
O4	C4	C5	C6	179.9°	180.0°
O4	C4	C5	H5	0.1°	0.1°
H5	C5	C6	H6	3.5°	0.0°
C2'	C1'	O4'	H1'	119.2°	119.5°
C1'	C2'	C3'	H2'	119.4°	118.7°
C1'	C2'	C3'	H2''	119.4°	118.7°
C1'	C2'	H2'	H2''	121.7°	122.6°
C1'	C2'	C3'	C4'	27.8°	20.9°
C1'	C2'	C3'	O3'	150.8°	139.1°
C1'	C2'	C3'	H3'	86.7°	97.3°
C2'	C1'	O4'	C4'	0.8°	26.5°
O4'	C1'	C2'	C3'	17.7°	2.0°
O4'	C1'	C2'	H2'	101.7°	120.7°
O4'	C1'	C2'	H2''	137.1°	116.7°
C1'	O4'	C4'	C3'	18.8°	40.0°
C1'	O4'	C4'	C5'	145.5°	158.6°
C1'	O4'	C4'	H4'	97.1°	78.4°
H1'	C1'	C2'	C3'	137.7°	117.5°
H1'	C1'	C2'	H2'	18.3°	1.1°
H1'	C1'	C2'	H2''	102.9°	123.8°
H1'	C1'	O4'	C4'	118.4°	92.9°
C3'	C2'	H2'	H2''	121.8°	122.7°
C2'	C3'	C4'	O3'	123.1°	118.2°
C2'	C3'	C4'	H3'	114.6°	118.2°
C2'	C3'	O3'	H3'	122.0°	123.6°
C2'	C3'	C4'	O4'	28.7°	37.0°
C2'	C3'	C4'	C5'	150.2°	155.5°
C2'	C3'	C4'	H4'	87.9°	81.5°
C2'	C3'	O3'	HO3'	180.0°	61.4°
H2'	C2'	C3'	C4'	91.6°	97.8°
H2'	C2'	C3'	O3'	31.4°	20.4°
H2'	C2'	C3'	H3'	153.9°	144.0°
H2''	C2'	C3'	C4'	147.2°	139.6°
H2''	C2'	C3'	O3'	89.8°	102.2°
H2''	C2'	C3'	H3'	32.7°	21.3°
C4'	C3'	O3'	H3'	121.6°	123.6°
C3'	C4'	O4'	C5'	126.7°	118.5°
C3'	C4'	O4'	H4'	115.9°	118.5°
C3'	C4'	C5'	H4'	121.7°	123.0°
C4'	C3'	O3'	HO3'	63.5°	174.2°
C3'	C4'	C5'	O5'	59.0°	175.0°
C3'	C4'	C5'	H5'	179.1°	55.0°
C3'	C4'	C5'	H5''	61.1°	65.0°
O3'	C3'	C4'	O4'	151.9°	155.2°
O3'	C3'	C4'	C5'	86.7°	86.3°
O3'	C3'	C4'	H4'	35.2°	36.8°
H3'	C3'	C4'	O4'	85.9°	81.2°
H3'	C3'	C4'	C5'	35.6°	37.3°
H3'	C3'	C4'	H4'	157.5°	160.3°
H3'	C3'	O3'	HO3'	58.0°	62.2°
O4'	C4'	C5'	H4'	117.8°	123.0°
O4'	C4'	C5'	O5'	61.5°	70.9°
O4'	C4'	C5'	H5'	58.6°	169.1°
O4'	C4'	C5'	H5''	178.4°	49.1°
C4'	C5'	O5'	H5'	120.1°	120.0°
C4'	C5'	O5'	H5''	120.1°	120.0°
C4'	C5'	H5'	H5''	119.8°	120.0°
C4'	C5'	O5'	P	174.4°	180.0°
H4'	C4'	C5'	O5'	179.3°	52.0°
H4'	C4'	C5'	H5'	59.2°	68.0°
H4'	C4'	C5'	H5''	60.6°	172.0°
O5'	C5'	H5'	H5''	119.8°	120.0°
C5'	O5'	P	OP1	175.6°	55.0°
C5'	O5'	P	OP2	55.2°	65.0°
C5'	O5'	P	OP3	67.4°	175.0°
H5'	C5'	O5'	P	65.5°	60.0°
H5''	C5'	O5'	P	54.3°	60.0°
O5'	P	OP1	OP2	118.0°	120.1°
O5'	P	OP1	OP3	115.1°	120.0°
O5'	P	OP2	OP3	118.6°	120.0°
O5'	P	OP2	HOP2	116.4°	60.0°
O5'	P	OP3	HOP3	114.4°	180.0°
OP1	P	OP2	OP3	125.0°	120.0°
OP1	P	OP2	HOP2	0.0°	180.0°
OP1	P	OP3	HOP3	0.0°	60.0°
OP2	P	OP3	HOP3	126.1°	60.0°
OP3	P	OP2	HOP2	125.0°	60.0°

Definition date:	1999-07-08
Last modified:	2020-06-17
Release status:	REL
Processing site:	RCSB