UMO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| OP1 | P | sing | 1.61Å | 1.50Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | C4' | sing | 1.54Å | 1.55Å | |
| OP2 | P | doub | 1.48Å | 1.45Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C2' | F2' | sing | 1.40Å | 1.35Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C4' | OM1 | sing | 1.43Å | 1.43Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| OM1 | CM1 | sing | 1.43Å | 1.41Å | |
| C6 | C5 | doub | 1.35Å | 1.33Å | |
| C6 | N1 | sing | 1.37Å | 1.37Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C5 | C4 | sing | 1.42Å | 1.43Å | |
| C1' | N1 | sing | 1.46Å | 1.46Å | |
| N1 | C2 | sing | 1.35Å | 1.37Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.38Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CM1 | H6M | sing | 1.09Å | 1.10Å | |
| CM1 | HM1 | sing | 1.09Å | 1.10Å | |
| CM1 | H6L | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| OP3 | H4 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 113.8° | 110.5° |
| O3' | C3' | C4' | 111.6° | 110.5° |
| O3' | C3' | H3' | 110.1° | 110.6° |
| C3' | O3' | H1 | 109.5° | 114.0° |
| OP1 | P | OP2 | 122.1° | 109.5° |
| OP1 | P | O5' | 115.5° | 109.5° |
| P | OP1 | H2 | 109.5° | 114.0° |
| OP1 | P | OP3 | 96.5° | 109.5° |
| C2' | C3' | C4' | 103.7° | 104.2° |
| C3' | C2' | F2' | 112.8° | 110.9° |
| C3' | C2' | C1' | 103.5° | 102.1° |
| C3' | C2' | H2' | 109.7° | 111.0° |
| C2' | C3' | H3' | 108.8° | 110.4° |
| C3' | C4' | C5' | 109.5° | 109.9° |
| C3' | C4' | OM1 | 101.4° | 109.8° |
| C3' | C4' | O4' | 96.0° | 107.3° |
| C4' | C3' | H3' | 108.5° | 110.5° |
| OP2 | P | O5' | 115.2° | 109.5° |
| OP2 | P | OP3 | 100.5° | 109.5° |
| P | O5' | C5' | 121.4° | 123.0° |
| O5' | P | OP3 | 99.8° | 109.5° |
| O5' | C5' | C4' | 111.7° | 109.4° |
| O5' | C5' | H5' | 108.9° | 109.5° |
| O5' | C5' | H5'' | 108.9° | 109.5° |
| C5' | C4' | OM1 | 119.4° | 109.9° |
| C5' | C4' | O4' | 114.6° | 110.1° |
| C4' | C5' | H5' | 108.9° | 109.4° |
| C4' | C5' | H5'' | 108.9° | 109.5° |
| F2' | C2' | C1' | 108.6° | 110.9° |
| F2' | C2' | H2' | 112.2° | 110.8° |
| C2' | C1' | O4' | 101.1° | 103.6° |
| C2' | C1' | N1 | 111.9° | 110.6° |
| C2' | C1' | H1' | 109.8° | 110.6° |
| C1' | C2' | H2' | 109.7° | 110.9° |
| OM1 | C4' | O4' | 112.2° | 109.8° |
| C4' | OM1 | CM1 | 106.6° | 114.0° |
| C4' | O4' | C1' | 119.4° | 107.0° |
| OM1 | CM1 | H6M | 109.5° | 109.4° |
| OM1 | CM1 | HM1 | 109.5° | 109.5° |
| OM1 | CM1 | H6L | 109.4° | 109.5° |
| C5 | C6 | N1 | 122.1° | 119.7° |
| C6 | C5 | C4 | 121.1° | 119.1° |
| C6 | C5 | H5 | 119.4° | 120.4° |
| C5 | C6 | H6 | 118.9° | 120.2° |
| C6 | N1 | C1' | 123.0° | 119.7° |
| C6 | N1 | C2 | 119.4° | 120.6° |
| N1 | C6 | H6 | 119.0° | 120.1° |
| O4' | C1' | N1 | 111.6° | 110.7° |
| O4' | C1' | H1' | 111.6° | 110.6° |
| C5 | C4 | O4 | 126.0° | 120.3° |
| C5 | C4 | N3 | 114.7° | 119.4° |
| C4 | C5 | H5 | 119.4° | 120.4° |
| C1' | N1 | C2 | 117.3° | 119.7° |
| N1 | C1' | H1' | 110.6° | 110.6° |
| N1 | C2 | N3 | 117.9° | 121.0° |
| N1 | C2 | O2 | 119.2° | 119.5° |
| O4 | C4 | N3 | 119.3° | 120.3° |
| C4 | N3 | C2 | 124.8° | 120.2° |
| C4 | N3 | H3 | 117.6° | 119.9° |
| N3 | C2 | O2 | 122.9° | 119.5° |
| C2 | N3 | H3 | 117.6° | 119.9° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| H6M | CM1 | HM1 | 109.5° | 109.5° |
| H6M | CM1 | H6L | 109.5° | 109.5° |
| HM1 | CM1 | H6L | 109.5° | 109.5° |
| P | OP3 | H4 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 121.5° | 118.7° |
| O3' | C3' | C2' | H3' | 123.2° | 122.7° |
| O3' | C3' | C4' | H3' | 121.5° | 122.7° |
| O3' | C3' | C4' | C5' | 81.5° | 119.7° |
| O3' | C3' | C2' | F2' | 43.6° | 20.3° |
| O3' | C3' | C2' | C1' | 160.8° | 97.8° |
| O3' | C3' | C4' | OM1 | 45.6° | 1.3° |
| O3' | C3' | C4' | O4' | 159.7° | 120.6° |
| O3' | C3' | C2' | H2' | 82.2° | 144.0° |
| OP1 | P | OP2 | O5' | 149.1° | 120.0° |
| OP1 | P | OP2 | OP3 | 104.7° | 120.0° |
| OP1 | P | O5' | OP3 | 102.1° | 120.0° |
| OP1 | P | O5' | C5' | 29.3° | 65.0° |
| OP1 | P | OP3 | H4 | 124.5° | 60.0° |
| C2' | C3' | C4' | H3' | 115.6° | 118.6° |
| C2' | C3' | C4' | C5' | 155.6° | 121.6° |
| C3' | C2' | F2' | C1' | 114.1° | 112.7° |
| C3' | C2' | F2' | H2' | 124.5° | 123.7° |
| C3' | C2' | C1' | H2' | 117.0° | 118.3° |
| C2' | C3' | C4' | OM1 | 77.3° | 117.4° |
| C2' | C3' | C4' | O4' | 36.8° | 1.8° |
| C3' | C2' | C1' | O4' | 23.8° | 37.0° |
| C3' | C2' | C1' | N1 | 95.0° | 155.6° |
| C3' | C2' | C1' | H1' | 141.7° | 81.6° |
| C2' | C3' | O3' | H1 | 180.0° | 61.5° |
| C3' | C4' | C5' | O5' | 64.6° | 174.1° |
| C3' | C4' | C5' | OM1 | 116.1° | 121.0° |
| C3' | C4' | C5' | O4' | 106.5° | 118.0° |
| C4' | C3' | C2' | F2' | 77.8° | 139.1° |
| C4' | C3' | C2' | C1' | 39.3° | 20.9° |
| C3' | C4' | OM1 | O4' | 101.4° | 117.8° |
| C3' | C4' | OM1 | CM1 | 163.0° | 176.3° |
| C3' | C4' | O4' | C1' | 24.3° | 26.2° |
| C4' | C3' | C2' | H2' | 156.3° | 97.3° |
| C3' | C4' | C5' | H5' | 55.7° | 65.9° |
| C3' | C4' | C5' | H5'' | 175.0° | 54.1° |
| C4' | C3' | O3' | H1 | 63.1° | 176.3° |
| OP2 | P | O5' | OP3 | 106.7° | 120.0° |
| OP2 | P | O5' | C5' | 179.5° | 55.0° |
| OP2 | P | OP1 | H2 | 0.0° | 180.0° |
| OP2 | P | OP3 | H4 | 0.0° | 60.0° |
| P | O5' | C5' | C4' | 165.7° | 180.0° |
| P | O5' | C5' | H5' | 74.0° | 60.0° |
| P | O5' | C5' | H5'' | 45.4° | 60.0° |
| O5' | P | OP1 | H2 | 149.0° | 60.0° |
| O5' | P | OP3 | H4 | 118.2° | 180.0° |
| O5' | C5' | C4' | H5' | 120.3° | 120.0° |
| O5' | C5' | C4' | H5'' | 120.4° | 120.0° |
| O5' | C5' | C4' | OM1 | 179.3° | 65.0° |
| O5' | C5' | C4' | O4' | 41.9° | 56.1° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.0° |
| C5' | O5' | P | OP3 | 72.9° | 175.0° |
| C5' | C4' | OM1 | O4' | 138.3° | 121.2° |
| C5' | C4' | OM1 | CM1 | 76.7° | 62.7° |
| C5' | C4' | O4' | C1' | 139.0° | 145.8° |
| C5' | C4' | C3' | H3' | 40.0° | 2.9° |
| C4' | C5' | H5' | H5'' | 119.0° | 120.0° |
| F2' | C2' | C1' | H2' | 122.9° | 123.6° |
| F2' | C2' | C1' | O4' | 96.3° | 155.1° |
| F2' | C2' | C1' | N1 | 144.9° | 86.3° |
| F2' | C2' | C1' | H1' | 21.6° | 36.6° |
| F2' | C2' | C3' | H3' | 166.9° | 102.3° |
| C2' | C1' | O4' | C4' | 1.1° | 39.8° |
| C2' | C1' | N1 | C6 | 99.6° | 117.2° |
| C2' | C1' | O4' | N1 | 119.1° | 118.6° |
| C2' | C1' | O4' | H1' | 116.6° | 118.5° |
| C2' | C1' | N1 | H1' | 122.8° | 122.9° |
| C2' | C1' | N1 | C2 | 87.3° | 62.8° |
| C1' | C2' | C3' | H3' | 76.0° | 139.5° |
| OM1 | C4' | O4' | C1' | 80.6° | 93.1° |
| OM1 | C4' | C3' | H3' | 167.1° | 124.0° |
| OM1 | C4' | C5' | H5' | 60.4° | 55.0° |
| OM1 | C4' | C5' | H5'' | 58.9° | 175.0° |
| C4' | OM1 | CM1 | H6M | 180.0° | 67.2° |
| C4' | OM1 | CM1 | HM1 | 60.0° | 52.8° |
| C4' | OM1 | CM1 | H6L | 60.0° | 172.8° |
| O4' | C4' | OM1 | CM1 | 61.6° | 58.5° |
| C4' | O4' | C1' | N1 | 120.1° | 158.4° |
| C4' | O4' | C1' | H1' | 115.6° | 78.7° |
| O4' | C4' | C3' | H3' | 78.8° | 116.8° |
| O4' | C4' | C5' | H5' | 162.2° | 176.1° |
| O4' | C4' | C5' | H5'' | 78.5° | 63.9° |
| OM1 | CM1 | H6M | HM1 | 120.0° | 120.0° |
| OM1 | CM1 | H6M | H6L | 120.0° | 120.0° |
| OM1 | CM1 | HM1 | H6L | 119.9° | 120.0° |
| C5 | C6 | N1 | H6 | 180.0° | 179.2° |
| C6 | C5 | C4 | H5 | 180.0° | 179.4° |
| C5 | C6 | N1 | C1' | 174.6° | 179.4° |
| C5 | C6 | N1 | C2 | 1.6° | 0.5° |
| C6 | C5 | C4 | O4 | 178.8° | 179.5° |
| C6 | C5 | C4 | N3 | 0.5° | 0.6° |
| C6 | N1 | C1' | O4' | 12.8° | 128.6° |
| N1 | C6 | C5 | C4 | 0.9° | 0.8° |
| C6 | N1 | C1' | C2 | 173.1° | 180.0° |
| C6 | N1 | C2 | N3 | 2.0° | 0.0° |
| C6 | N1 | C2 | O2 | 179.0° | 179.8° |
| C6 | N1 | C1' | H1' | 137.6° | 5.7° |
| N1 | C6 | C5 | H5 | 179.1° | 179.8° |
| O4' | C1' | N1 | H1' | 124.8° | 122.9° |
| O4' | C1' | N1 | C2 | 160.3° | 51.4° |
| O4' | C1' | C2' | H2' | 140.8° | 81.3° |
| C5 | C4 | O4 | N3 | 179.3° | 179.9° |
| C5 | C4 | N3 | C2 | 1.0° | 0.1° |
| C4 | C5 | C6 | H6 | 179.1° | 179.9° |
| C5 | C4 | N3 | H3 | 179.0° | 180.0° |
| C1' | N1 | C2 | N3 | 175.3° | 180.0° |
| C1' | N1 | C2 | O2 | 5.6° | 0.2° |
| N1 | C1' | C2' | H2' | 21.9° | 37.3° |
| C1' | N1 | C6 | H6 | 5.4° | 0.2° |
| N1 | C2 | N3 | C4 | 1.7° | 0.2° |
| N1 | C2 | N3 | O2 | 179.0° | 179.8° |
| C2 | N1 | C1' | H1' | 35.5° | 174.3° |
| C2 | N1 | C6 | H6 | 178.4° | 179.8° |
| N1 | C2 | N3 | H3 | 178.3° | 179.7° |
| O4 | C4 | N3 | C2 | 178.4° | 180.0° |
| O4 | C4 | C5 | H5 | 1.2° | 0.1° |
| O4 | C4 | N3 | H3 | 1.6° | 0.1° |
| C4 | N3 | C2 | H3 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.3° | 180.0° |
| N3 | C4 | C5 | H5 | 179.5° | 180.0° |
| O2 | C2 | N3 | H3 | 0.7° | 0.1° |
| H1' | C1' | C2' | H2' | 101.3° | 160.2° |
| H2' | C2' | C3' | H3' | 41.0° | 21.3° |
| H3' | C3' | O3' | H1 | 57.5° | 61.1° |
| H5 | C5 | C6 | H6 | 0.9° | 0.6° |
| H6M | CM1 | HM1 | H6L | 120.0° | 120.0° |
| H2 | OP1 | P | OP3 | 106.8° | 60.0° |
