UMF

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.34Å	1.42Å	Aromatic
N1	C6	sing	1.37Å	1.45Å	Aromatic
N1	C1'	sing	1.47Å	1.60Å
C2	O2	doub	1.21Å	1.17Å
C2	N3	sing	1.35Å	1.40Å	Aromatic
N3	C4	sing	1.35Å	1.43Å	Aromatic
N3	H3	sing	0.97Å	1.02Å
C4	O4	doub	1.22Å	1.21Å
C4	C5	sing	1.41Å	1.47Å	Aromatic
C5	C6	doub	1.35Å	1.36Å	Aromatic
C5	H5	sing	1.08Å	1.10Å
C6	H6	sing	1.08Å	1.10Å
O5'	C5'	sing	1.43Å	1.57Å
O5'	H5'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.55Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.36Å
C4'	C3'	sing	1.54Å	1.48Å
C4'	H4'	sing	1.09Å	1.12Å
O4'	C1'	sing	1.44Å	1.64Å
C3'	O3'	sing	1.43Å	1.50Å
C3'	C2'	sing	1.55Å	1.63Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	P	sing	1.61Å	1.32Å
C2'	F2'	sing	1.40Å	1.28Å
C2'	C1'	sing	1.55Å	1.63Å
C2'	H2'	sing	1.09Å	1.11Å
C1'	H1'	sing	1.09Å	1.11Å
O3P	P	sing	1.61Å	1.60Å
O3P	H3P	sing	0.97Å	0.95Å
P	O1P	sing	1.61Å	1.51Å
P	O2P	doub	1.48Å	1.48Å
O1P	H1P	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	122.2°	120.6°
C2	N1	C1'	120.8°	119.7°
N1	C2	O2	121.3°	119.6°
N1	C2	N3	113.2°	120.9°
C6	N1	C1'	117.0°	119.7°
N1	C6	C5	122.2°	119.7°
N1	C6	H6	118.9°	120.2°
N1	C1'	O4'	108.2°	110.5°
N1	C1'	C2'	113.1°	110.8°
N1	C1'	H1'	112.1°	110.6°
O2	C2	N3	125.5°	119.6°
C2	N3	C4	128.0°	120.3°
C2	N3	H3	116.0°	119.9°
C4	N3	H3	116.0°	119.8°
N3	C4	O4	117.4°	120.3°
N3	C4	C5	115.2°	119.3°
O4	C4	C5	127.3°	120.4°
C4	C5	C6	119.1°	119.1°
C4	C5	H5	120.4°	120.4°
C6	C5	H5	120.4°	120.5°
C5	C6	H6	118.9°	120.1°
C5'	O5'	H5'	99.0°	106.9°
O5'	C5'	C4'	99.0°	109.6°
O5'	C5'	H5'1	116.2°	109.4°
O5'	C5'	H5'2	116.2°	109.5°
C4'	C5'	H5'1	116.2°	109.4°
C4'	C5'	H5'2	116.2°	109.5°
C5'	C4'	O4'	101.3°	109.9°
C5'	C4'	C3'	140.1°	109.9°
C5'	C4'	H4'	98.7°	109.8°
H5'1	C5'	H5'2	94.2°	109.4°
O4'	C4'	C3'	111.2°	107.4°
O4'	C4'	H4'	98.7°	109.9°
C4'	O4'	C1'	111.1°	106.9°
C3'	C4'	H4'	98.7°	109.9°
C4'	C3'	O3'	133.5°	110.8°
C4'	C3'	C2'	106.4°	104.0°
C4'	C3'	H3'	101.7°	110.5°
O4'	C1'	C2'	98.4°	103.5°
O4'	C1'	H1'	112.1°	110.6°
O3'	C3'	C2'	107.3°	110.5°
O3'	C3'	H3'	101.7°	110.4°
C3'	O3'	P	130.0°	106.9°
C2'	C3'	H3'	101.8°	110.5°
C3'	C2'	F2'	96.2°	110.9°
C3'	C2'	C1'	105.1°	102.1°
C3'	C2'	H2'	108.7°	110.9°
O3'	P	O3P	100.1°	109.5°
O3'	P	O1P	122.0°	109.4°
O3'	P	O2P	99.4°	109.5°
F2'	C2'	C1'	127.5°	110.9°
F2'	C2'	H2'	108.8°	110.8°
C1'	C2'	H2'	108.8°	110.9°
C2'	C1'	H1'	112.1°	110.7°
P	O3P	H3P	100.1°	106.8°
O3P	P	O1P	107.7°	109.5°
O3P	P	O2P	116.5°	109.5°
O1P	P	O2P	111.2°	109.5°
P	O1P	H1P	122.0°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	179.9°	179.9°
N1	C2	O2	N3	179.6°	179.5°
N1	C2	N3	C4	0.3°	0.5°
N1	C2	N3	H3	179.7°	179.8°
C2	N1	C6	C5	0.6°	0.2°
C2	N1	C6	H6	179.4°	179.8°
C2	N1	C1'	O4'	176.1°	58.4°
C2	N1	C1'	C2'	68.2°	55.8°
C2	N1	C1'	H1'	59.8°	178.8°
C6	N1	C2	O2	179.7°	180.0°
C6	N1	C2	N3	0.6°	0.5°
N1	C6	C5	C4	0.1°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	179.9°	180.0°
C6	N1	C1'	O4'	4.0°	121.5°
C6	N1	C1'	C2'	111.9°	124.4°
C6	N1	C1'	H1'	120.1°	1.3°
C1'	N1	C2	O2	0.4°	0.2°
C1'	N1	C2	N3	179.3°	179.7°
C1'	N1	C6	C5	179.4°	179.9°
C1'	N1	C6	H6	0.6°	0.0°
N1	C1'	O4'	C4'	145.6°	158.7°
N1	C1'	O4'	C2'	117.8°	118.7°
N1	C1'	O4'	H1'	124.1°	122.8°
N1	C1'	C2'	C3'	130.1°	155.6°
N1	C1'	C2'	F2'	119.6°	86.2°
N1	C1'	C2'	H1'	128.0°	123.0°
N1	C1'	C2'	H2'	13.9°	37.4°
O2	C2	N3	C4	180.0°	180.0°
O2	C2	N3	H3	0.0°	0.3°
C2	N3	C4	H3	180.0°	179.7°
C2	N3	C4	O4	179.8°	179.7°
C2	N3	C4	C5	0.1°	0.3°
N3	C4	O4	C5	179.9°	179.9°
N3	C4	C5	C6	0.2°	0.1°
N3	C4	C5	H5	179.8°	179.9°
H3	N3	C4	O4	0.2°	0.1°
H3	N3	C4	C5	179.9°	180.0°
O4	C4	C5	C6	179.7°	180.0°
O4	C4	C5	H5	0.3°	0.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.9°	180.0°
H5	C5	C6	H6	0.1°	0.0°
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.1°
O5'	C5'	H5'1	H5'2	122.0°	119.9°
O5'	C5'	C4'	O4'	81.6°	61.6°
O5'	C5'	C4'	C3'	62.8°	179.7°
O5'	C5'	C4'	H4'	177.7°	59.3°
H5'	O5'	C5'	C4'	180.0°	180.0°
H5'	O5'	C5'	H5'1	54.7°	60.1°
H5'	O5'	C5'	H5'2	54.8°	59.8°
C4'	C5'	H5'1	H5'2	122.0°	120.0°
C5'	C4'	O4'	C3'	156.4°	119.5°
C5'	C4'	O4'	H4'	100.7°	120.9°
C5'	C4'	C3'	H4'	114.9°	121.0°
C5'	C4'	O4'	C1'	174.8°	146.0°
C5'	C4'	C3'	O3'	66.8°	119.8°
C5'	C4'	C3'	C2'	158.3°	121.5°
C5'	C4'	C3'	H3'	52.1°	2.9°
H5'1	C5'	C4'	O4'	43.6°	58.3°
H5'1	C5'	C4'	C3'	172.0°	59.7°
H5'1	C5'	C4'	H4'	57.1°	179.3°
H5'2	C5'	C4'	O4'	153.1°	178.3°
H5'2	C5'	C4'	C3'	62.5°	60.3°
H5'2	C5'	C4'	H4'	52.4°	60.7°
O4'	C4'	C3'	H4'	102.9°	119.5°
O4'	C4'	C3'	O3'	150.9°	120.7°
O4'	C4'	C3'	C2'	16.0°	1.9°
O4'	C4'	C3'	H3'	90.1°	116.7°
C4'	O4'	C1'	C2'	27.8°	40.1°
C4'	O4'	C1'	H1'	90.3°	78.5°
C3'	C4'	O4'	C1'	28.8°	26.4°
C4'	C3'	O3'	C2'	134.6°	114.7°
C4'	C3'	O3'	H3'	118.9°	122.7°
C4'	C3'	C2'	H3'	106.2°	118.6°
C4'	C3'	O3'	P	121.9°	123.8°
C4'	C3'	C2'	F2'	134.1°	139.2°
C4'	C3'	C2'	C1'	2.6°	21.0°
C4'	C3'	C2'	H2'	113.7°	97.2°
H4'	C4'	O4'	C1'	74.1°	93.1°
H4'	C4'	C3'	O3'	48.1°	1.1°
H4'	C4'	C3'	C2'	86.8°	117.6°
H4'	C4'	C3'	H3'	167.0°	123.8°
O4'	C1'	C2'	C3'	16.2°	37.1°
O4'	C1'	C2'	F2'	126.4°	155.3°
O4'	C1'	C2'	H1'	118.1°	118.5°
O4'	C1'	C2'	H2'	100.1°	81.1°
O3'	C3'	C2'	H3'	106.4°	122.5°
O3'	C3'	C2'	F2'	13.3°	20.3°
O3'	C3'	C2'	C1'	144.8°	97.9°
O3'	C3'	C2'	H2'	98.9°	143.8°
C3'	O3'	P	O3P	69.3°	180.0°
C3'	O3'	P	O1P	49.0°	60.0°
C3'	O3'	P	O2P	171.4°	60.0°
C2'	C3'	O3'	P	103.4°	121.5°
C3'	C2'	F2'	C1'	114.3°	112.7°
C3'	C2'	F2'	H2'	112.2°	123.6°
C3'	C2'	C1'	H2'	116.3°	118.2°
C3'	C2'	C1'	H1'	101.9°	81.4°
H3'	C3'	O3'	P	3.0°	1.1°
H3'	C3'	C2'	F2'	119.7°	102.2°
H3'	C3'	C2'	C1'	108.8°	139.6°
H3'	C3'	C2'	H2'	7.5°	21.3°
O3'	P	O3P	O1P	128.4°	120.0°
O3'	P	O3P	O2P	105.9°	120.0°
O3'	P	O3P	H3P	180.0°	180.0°
O3'	P	O1P	O2P	116.6°	120.0°
O3'	P	O1P	H1P	180.0°	60.0°
F2'	C2'	C1'	H2'	133.5°	123.6°
F2'	C2'	C1'	H1'	8.3°	36.8°
H2'	C2'	C1'	H1'	141.8°	160.4°
O3P	P	O1P	O2P	128.8°	120.0°
O3P	P	O1P	H1P	65.5°	60.0°
H3P	O3P	P	O1P	51.6°	60.0°
H3P	O3P	P	O2P	74.1°	60.0°
O2P	P	O1P	H1P	63.3°	180.0°

Definition date:	2004-07-27
Last modified:	2021-03-13
Release status:	REL
Processing site:	RCSB
Derived from:	1W4Q