UMC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | P | sing | 1.61Å | 1.62Å | |
| O2P | P | doub | 1.48Å | 1.50Å | |
| P | O1P | sing | 1.61Å | 1.51Å | |
| P | O3P | sing | 1.61Å | 1.52Å | |
| C2 | N1 | sing | 1.34Å | 1.33Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| N1 | C6 | sing | 1.46Å | 1.46Å | |
| O2 | C2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.34Å | 1.34Å | |
| HN3 | N3 | sing | 0.97Å | 1.00Å | |
| N3 | C4 | sing | 1.35Å | 1.34Å | |
| O4 | C4 | doub | 1.21Å | 1.24Å | |
| C4 | C5 | sing | 1.51Å | 1.51Å | |
| H5A | C5 | sing | 1.09Å | 1.10Å | |
| C5 | C6 | sing | 1.53Å | 1.52Å | |
| C5 | H5 | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H6A | sing | 1.09Å | 1.10Å | |
| H1' | C1' | sing | 1.09Å | 1.10Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| O1P | HO1P | sing | 0.97Å | 0.95Å | |
| H2'A | C2' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| HO3' | O3' | sing | 0.97Å | 0.95Å | |
| O3P | HO3P | sing | 0.97Å | 0.95Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| H4' | C4' | sing | 1.09Å | 1.10Å | |
| C4' | C5' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | P | O2P | 106.0° | 109.5° |
| O5' | P | O1P | 101.6° | 109.5° |
| O5' | P | O3P | 106.2° | 109.5° |
| P | O5' | C5' | 121.6° | 123.0° |
| O2P | P | O1P | 113.2° | 109.5° |
| O2P | P | O3P | 114.2° | 109.5° |
| O1P | P | O3P | 114.1° | 109.5° |
| P | O1P | HO1P | 109.5° | 114.0° |
| P | O3P | HO3P | 109.5° | 114.0° |
| C2 | N1 | C1' | 119.9° | 119.5° |
| C2 | N1 | C6 | 125.1° | 120.9° |
| N1 | C2 | O2 | 121.0° | 119.2° |
| N1 | C2 | N3 | 118.0° | 121.6° |
| C1' | N1 | C6 | 114.9° | 119.6° |
| N1 | C1' | H1' | 108.4° | 109.9° |
| N1 | C1' | C2' | 116.0° | 109.9° |
| N1 | C1' | O4' | 111.2° | 109.9° |
| N1 | C6 | C5 | 111.0° | 109.5° |
| N1 | C6 | H6 | 109.1° | 109.5° |
| N1 | C6 | H6A | 109.1° | 109.4° |
| O2 | C2 | N3 | 121.0° | 119.2° |
| C2 | N3 | HN3 | 117.8° | 119.6° |
| C2 | N3 | C4 | 124.5° | 121.0° |
| HN3 | N3 | C4 | 117.7° | 119.5° |
| N3 | C4 | O4 | 120.1° | 120.0° |
| N3 | C4 | C5 | 120.0° | 120.0° |
| O4 | C4 | C5 | 119.9° | 120.0° |
| C4 | C5 | H5A | 108.7° | 109.5° |
| C4 | C5 | C6 | 112.5° | 109.2° |
| C4 | C5 | H5 | 108.7° | 109.5° |
| H5A | C5 | C6 | 108.7° | 109.5° |
| H5A | C5 | H5 | 109.4° | 109.5° |
| C6 | C5 | H5 | 108.7° | 109.5° |
| C5 | C6 | H6 | 109.1° | 109.5° |
| C5 | C6 | H6A | 109.1° | 109.5° |
| H6 | C6 | H6A | 109.4° | 109.4° |
| H1' | C1' | C2' | 107.7° | 109.8° |
| H1' | C1' | O4' | 109.0° | 110.0° |
| C2' | C1' | O4' | 104.5° | 107.3° |
| C1' | C2' | H2'A | 111.5° | 110.4° |
| C1' | C2' | C3' | 101.2° | 104.2° |
| C1' | C2' | H2' | 111.5° | 110.5° |
| C1' | O4' | C4' | 111.0° | 107.0° |
| H2'A | C2' | C3' | 111.5° | 110.5° |
| H2'A | C2' | H2' | 109.5° | 110.5° |
| C3' | C2' | H2' | 111.5° | 110.5° |
| C2' | C3' | O3' | 111.3° | 111.0° |
| C2' | C3' | H3' | 110.6° | 110.9° |
| C2' | C3' | C4' | 102.2° | 102.1° |
| O3' | C3' | H3' | 112.0° | 110.8° |
| O3' | C3' | C4' | 109.6° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| H3' | C3' | C4' | 110.7° | 110.9° |
| C3' | C4' | O4' | 105.3° | 103.5° |
| C3' | C4' | H4' | 110.3° | 110.6° |
| C3' | C4' | C5' | 111.1° | 110.6° |
| O4' | C4' | H4' | 111.6° | 110.8° |
| O4' | C4' | C5' | 108.1° | 110.6° |
| H4' | C4' | C5' | 110.2° | 110.6° |
| C4' | C5' | H5' | 108.9° | 109.4° |
| C4' | C5' | H5'A | 108.9° | 109.5° |
| C4' | C5' | O5' | 111.7° | 109.5° |
| H5' | C5' | H5'A | 109.5° | 109.4° |
| H5' | C5' | O5' | 108.9° | 109.5° |
| H5'A | C5' | O5' | 108.9° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | P | O2P | O1P | 110.6° | 120.0° |
| O5' | P | O2P | O3P | 116.5° | 120.0° |
| O5' | P | O1P | O3P | 113.8° | 120.0° |
| O5' | P | O1P | HO1P | 113.3° | 60.0° |
| O5' | P | O3P | HO3P | 116.4° | 179.9° |
| P | O5' | C5' | C4' | 137.2° | 180.0° |
| P | O5' | C5' | H5' | 16.9° | 60.0° |
| P | O5' | C5' | H5'A | 102.5° | 60.0° |
| O2P | P | O1P | O3P | 132.9° | 120.0° |
| O2P | P | O1P | HO1P | 0.0° | 180.0° |
| O2P | P | O3P | HO3P | 0.0° | 59.9° |
| O2P | P | O5' | C5' | 61.4° | 55.0° |
| O1P | P | O3P | HO3P | 132.5° | 60.0° |
| O1P | P | O5' | C5' | 180.0° | 65.0° |
| O3P | P | O1P | HO1P | 132.9° | 60.0° |
| O3P | P | O5' | C5' | 60.4° | 175.0° |
| C2 | N1 | C1' | C6 | 178.2° | 179.7° |
| N1 | C2 | O2 | N3 | 179.6° | 179.9° |
| N1 | C2 | N3 | HN3 | 171.8° | 168.0° |
| N1 | C2 | N3 | C4 | 8.2° | 12.1° |
| C2 | N1 | C6 | C5 | 29.6° | 35.9° |
| C2 | N1 | C6 | H6 | 149.9° | 84.1° |
| C2 | N1 | C6 | H6A | 90.7° | 155.9° |
| C2 | N1 | C1' | H1' | 39.3° | 174.3° |
| C2 | N1 | C1' | C2' | 81.9° | 64.7° |
| C2 | N1 | C1' | O4' | 159.0° | 53.1° |
| C1' | N1 | C2 | O2 | 6.5° | 5.5° |
| C1' | N1 | C2 | N3 | 173.1° | 174.6° |
| C1' | N1 | C6 | C5 | 152.3° | 144.4° |
| C1' | N1 | C6 | H6 | 32.1° | 95.6° |
| C1' | N1 | C6 | H6A | 87.4° | 24.4° |
| N1 | C1' | H1' | C2' | 126.2° | 121.0° |
| N1 | C1' | H1' | O4' | 121.1° | 121.1° |
| N1 | C1' | C2' | O4' | 122.7° | 119.5° |
| N1 | C1' | C2' | H2'A | 84.3° | 2.8° |
| N1 | C1' | C2' | C3' | 157.1° | 121.5° |
| N1 | C1' | C2' | H2' | 38.4° | 119.8° |
| N1 | C1' | O4' | C4' | 142.3° | 146.0° |
| C6 | N1 | C2 | O2 | 171.4° | 174.2° |
| C6 | N1 | C2 | N3 | 8.9° | 5.7° |
| N1 | C6 | C5 | C4 | 32.5° | 46.7° |
| N1 | C6 | C5 | H5A | 153.0° | 166.7° |
| N1 | C6 | C5 | H6 | 120.2° | 120.0° |
| N1 | C6 | C5 | H6A | 120.3° | 120.0° |
| N1 | C6 | C5 | H5 | 88.0° | 73.2° |
| N1 | C6 | H6 | H6A | 119.3° | 119.9° |
| C6 | N1 | C1' | H1' | 142.6° | 6.0° |
| C6 | N1 | C1' | C2' | 96.3° | 115.0° |
| C6 | N1 | C1' | O4' | 22.8° | 127.2° |
| O2 | C2 | N3 | HN3 | 8.5° | 11.9° |
| O2 | C2 | N3 | C4 | 171.4° | 168.0° |
| C2 | N3 | HN3 | C4 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 176.6° | 175.6° |
| C2 | N3 | C4 | C5 | 1.1° | 4.4° |
| HN3 | N3 | C4 | O4 | 3.4° | 4.5° |
| HN3 | N3 | C4 | C5 | 178.9° | 175.6° |
| N3 | C4 | O4 | C5 | 177.7° | 180.0° |
| N3 | C4 | C5 | H5A | 140.9° | 154.2° |
| N3 | C4 | C5 | C6 | 20.4° | 34.2° |
| N3 | C4 | C5 | H5 | 100.1° | 85.7° |
| O4 | C4 | C5 | H5A | 41.4° | 25.8° |
| O4 | C4 | C5 | C6 | 161.9° | 145.7° |
| O4 | C4 | C5 | H5 | 77.6° | 94.3° |
| C4 | C5 | H5A | C6 | 122.8° | 119.7° |
| C4 | C5 | H5A | H5 | 118.6° | 120.1° |
| C4 | C5 | C6 | H5 | 120.5° | 119.9° |
| C4 | C5 | C6 | H6 | 152.8° | 73.3° |
| C4 | C5 | C6 | H6A | 87.7° | 166.7° |
| H5A | C5 | C6 | H5 | 119.0° | 120.1° |
| H5A | C5 | C6 | H6 | 86.7° | 46.6° |
| H5A | C5 | C6 | H6A | 32.7° | 73.4° |
| C5 | C6 | H6 | H6A | 119.3° | 120.0° |
| H5 | C5 | C6 | H6 | 32.3° | 166.7° |
| H5 | C5 | C6 | H6A | 151.8° | 46.8° |
| H1' | C1' | C2' | O4' | 115.7° | 119.5° |
| H1' | C1' | C2' | H2'A | 37.2° | 123.8° |
| H1' | C1' | C2' | C3' | 81.4° | 117.6° |
| H1' | C1' | C2' | H2' | 160.0° | 1.2° |
| H1' | C1' | O4' | C4' | 98.3° | 92.9° |
| C1' | C2' | H2'A | C3' | 112.3° | 114.7° |
| C1' | C2' | H2'A | H2' | 123.9° | 122.6° |
| C1' | C2' | C3' | H2' | 118.6° | 118.7° |
| C1' | C2' | C3' | O3' | 78.1° | 139.1° |
| C1' | C2' | C3' | H3' | 156.7° | 97.2° |
| C1' | C2' | C3' | C4' | 38.8° | 20.9° |
| C2' | C1' | O4' | C4' | 16.5° | 26.5° |
| O4' | C1' | C2' | H2'A | 153.0° | 116.6° |
| O4' | C1' | C2' | C3' | 34.4° | 2.0° |
| O4' | C1' | C2' | H2' | 84.3° | 120.7° |
| C1' | O4' | C4' | C3' | 8.6° | 40.0° |
| C1' | O4' | C4' | H4' | 128.3° | 78.5° |
| C1' | O4' | C4' | C5' | 110.3° | 158.5° |
| H2'A | C2' | C3' | H2' | 122.7° | 122.7° |
| H2'A | C2' | C3' | O3' | 40.6° | 102.2° |
| H2'A | C2' | C3' | H3' | 84.6° | 21.4° |
| H2'A | C2' | C3' | C4' | 157.5° | 139.5° |
| C2' | C3' | O3' | H3' | 124.4° | 123.7° |
| C2' | C3' | O3' | C4' | 112.4° | 112.7° |
| C2' | C3' | H3' | C4' | 112.6° | 112.7° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.4° |
| C2' | C3' | C4' | O4' | 30.0° | 37.0° |
| C2' | C3' | C4' | H4' | 150.6° | 81.7° |
| C2' | C3' | C4' | C5' | 86.8° | 155.5° |
| H2' | C2' | C3' | O3' | 163.3° | 20.4° |
| H2' | C2' | C3' | H3' | 38.1° | 144.0° |
| H2' | C2' | C3' | C4' | 79.8° | 97.8° |
| O3' | C3' | H3' | C4' | 122.6° | 123.6° |
| O3' | C3' | C4' | O4' | 88.1° | 155.3° |
| O3' | C3' | C4' | H4' | 32.4° | 36.6° |
| O3' | C3' | C4' | C5' | 155.0° | 86.2° |
| H3' | C3' | O3' | HO3' | 55.6° | 62.3° |
| H3' | C3' | C4' | O4' | 147.9° | 81.2° |
| H3' | C3' | C4' | H4' | 91.6° | 160.1° |
| H3' | C3' | C4' | C5' | 31.0° | 37.3° |
| C4' | C3' | O3' | HO3' | 67.6° | 174.1° |
| C3' | C4' | O4' | H4' | 119.7° | 118.5° |
| C3' | C4' | O4' | C5' | 118.9° | 118.5° |
| C3' | C4' | H4' | C5' | 123.1° | 122.9° |
| C3' | C4' | C5' | H5' | 44.1° | 55.0° |
| C3' | C4' | C5' | H5'A | 163.4° | 65.0° |
| C3' | C4' | C5' | O5' | 76.2° | 175.0° |
| O4' | C4' | H4' | C5' | 120.2° | 123.0° |
| O4' | C4' | C5' | H5' | 71.0° | 169.0° |
| O4' | C4' | C5' | H5'A | 48.3° | 49.1° |
| O4' | C4' | C5' | O5' | 168.7° | 71.0° |
| H4' | C4' | C5' | H5' | 166.7° | 67.9° |
| H4' | C4' | C5' | H5'A | 73.9° | 172.2° |
| H4' | C4' | C5' | O5' | 46.4° | 52.1° |
| C4' | C5' | H5' | H5'A | 119.0° | 120.0° |
| C4' | C5' | H5' | O5' | 122.0° | 120.0° |
| C4' | C5' | H5'A | O5' | 122.0° | 120.0° |
| H5' | C5' | H5'A | O5' | 119.0° | 120.0° |
