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SummaryGeometryRelated PDB entries

UHL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
N09C08sing1.38Å1.45Å
N07C08doub1.31Å1.32ÅAromatic
N07N06sing1.29Å1.36ÅAromatic
C08O10sing1.35Å1.34ÅAromatic
N06C05doub1.30Å1.32ÅAromatic
O10C05sing1.35Å1.34ÅAromatic
C05C04sing1.51Å1.52Å
O02C01sing1.43Å1.40Å
O02C03sing1.43Å1.40Å
C04C03sing1.53Å1.52Å
C01H1sing1.09Å1.10Å
C01H2sing1.09Å1.10Å
C01H3sing1.09Å1.10Å
C03H4sing1.09Å1.10Å
C03H5sing1.09Å1.10Å
C04H6sing1.09Å1.10Å
C04H7sing1.09Å1.10Å
N09H8sing0.97Å1.00Å
N09H9sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
N09C08N07125.3°126.4°
N09C08O10126.7°126.3°
C08N09H8109.5°120.1°
C08N09H9109.5°119.9°
C08N07N06108.4°109.3°
N07C08O10108.1°107.3°
N07N06C05107.1°109.6°
C08O10C05107.5°106.3°
N06C05O10108.9°107.6°
N06C05C04124.4°126.2°
O10C05C04126.7°126.2°
C05C04C03109.4°109.4°
C05C04H6109.5°109.5°
C05C04H7109.5°109.5°
C01O02C03114.1°114.0°
O02C01H1109.5°109.5°
O02C01H2109.5°109.5°
O02C01H3109.5°109.4°
O02C03C04108.7°109.5°
O02C03H4109.7°109.4°
O02C03H5109.7°109.5°
C04C03H4109.7°109.5°
C04C03H5109.7°109.5°
C03C04H6109.5°109.4°
C03C04H7109.5°109.5°
H1C01H2109.5°109.5°
H1C01H3109.5°109.5°
H2C01H3109.5°109.5°
H4C03H5109.5°109.5°
H6C04H7109.5°109.5°
H8N09H9109.5°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
N09C08N07O10179.9°179.6°
N09C08N07N06180.0°179.9°
N09C08O10C05179.9°180.0°
C08N09H8H9120.0°179.9°
C08N07N06C050.0°0.0°
N07C08O10C050.2°0.4°
N07C08N09H80.0°179.6°
N07C08N09H9120.0°0.5°
N06N07C08O100.1°0.2°
N07N06C05O100.1°0.2°
N07N06C05C04179.9°180.0°
C08O10C05N060.2°0.4°
C08O10C05C04179.8°179.9°
O10C08N09H8179.9°0.0°
O10C08N09H959.8°179.9°
N06C05O10C04180.0°179.7°
N06C05C04C0316.9°90.0°
N06C05C04H6103.1°29.9°
N06C05C04H7136.8°150.0°
O10C05C04C03163.1°90.3°
O10C05C04H676.9°149.8°
O10C05C04H743.2°29.7°
C05C04C03O02109.6°180.0°
C05C04C03H6120.0°120.0°
C05C04C03H7120.0°120.0°
C05C04C03H410.3°60.0°
C05C04C03H5130.5°60.0°
C05C04H6H7120.0°120.1°
C01O02C03C04157.2°179.9°
O02C01H1H2120.0°120.0°
O02C01H1H3120.0°120.0°
O02C01H2H3120.0°119.9°
C01O02C03H482.9°60.1°
C01O02C03H537.3°59.9°
O02C03C04H4119.9°120.0°
O02C03C04H5119.9°120.0°
C03O02C01H1180.0°59.9°
C03O02C01H260.0°180.0°
C03O02C01H360.0°60.1°
O02C03H4H5120.3°120.0°
O02C03C04H610.4°60.0°
O02C03C04H7130.4°60.0°
C04C03H4H5120.4°120.0°
C03C04H6H7120.1°120.0°
H1C01H2H3120.0°120.0°
H4C03C04H6130.3°60.0°
H4C03C04H7109.7°180.0°
H5C03C04H6109.5°180.0°
H5C03C04H710.6°60.0°

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PDB entries from 2026-02-04

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