UGB

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1D	N1	sing	1.47Å	1.48Å
C6	N1	sing	1.37Å	1.40Å
N1	C2	sing	1.35Å	1.44Å
C2	O2	doub	1.22Å	1.22Å
C2	N3	sing	1.35Å	1.42Å
C4	N3	sing	1.35Å	1.33Å
C5	C4	sing	1.42Å	1.45Å
C4	O4	doub	1.22Å	1.35Å
C6	C5	doub	1.35Å	1.36Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
O2A	PA	doub	1.48Å	1.58Å
O3A	PA	sing	1.61Å	1.58Å
PA	O1A	sing	1.61Å	1.49Å
PA	O5D	sing	1.61Å	1.66Å
O2B	PB	doub	1.48Å	1.57Å
O3A	PB	sing	1.61Å	1.58Å
O3B	PB	sing	1.61Å	1.65Å
PB	O1B	sing	1.61Å	1.48Å
O'P	C6'	doub	1.21Å	1.21Å
C6'	O'Q	sing	1.34Å	1.35Å
O'Q	HO'Q	sing	0.97Å	0.95Å
O3B	C1'	sing	1.43Å	1.41Å
O5'	C1'	sing	1.43Å	1.41Å
C1'	C2'	sing	1.53Å	1.58Å
C1'	H1'	sing	1.09Å	1.10Å
O1A	HO1A	sing	0.97Å	0.95Å
O1B	HO1B	sing	0.97Å	0.95Å
C2D	C1D	sing	1.55Å	1.57Å
O4D	C1D	sing	1.44Å	1.41Å
C1D	H1D	sing	1.09Å	1.10Å
C3'	C2'	sing	1.53Å	1.59Å
C2'	O2'	sing	1.43Å	1.40Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C3D	C2D	sing	1.55Å	1.58Å
C2D	O2D	sing	1.43Å	1.39Å
C2D	H2D	sing	1.09Å	1.10Å
O2D	HO2D	sing	0.97Å	0.95Å
C4'	C3'	sing	1.53Å	1.56Å
C3'	O3'	sing	1.43Å	1.40Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C3D	O3D	sing	1.43Å	1.39Å
C3D	C4D	sing	1.54Å	1.59Å
C3D	H3D	sing	1.09Å	1.10Å
O3D	HO3D	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.57Å
C4'	O4'	sing	1.43Å	1.40Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	HO4'	sing	0.97Å	0.95Å
C5D	C4D	sing	1.53Å	1.55Å
C4D	O4D	sing	1.44Å	1.42Å
C4D	H4D	sing	1.09Å	1.10Å
C6'	C5'	sing	1.51Å	1.51Å
C5'	O5'	sing	1.43Å	1.41Å
C5'	H5'	sing	1.09Å	1.10Å
O5D	C5D	sing	1.43Å	1.39Å
C5D	H5D	sing	1.09Å	1.10Å
C5D	H5DA	sing	1.09Å	1.10Å
N3	HN3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1D	N1	C6	115.3°	119.7°
C1D	N1	C2	125.0°	119.7°
N1	C1D	C2D	118.0°	110.6°
N1	C1D	O4D	115.1°	110.6°
N1	C1D	H1D	98.7°	110.5°
C6	N1	C2	119.6°	120.7°
N1	C6	C5	122.1°	119.7°
N1	C6	H6	118.9°	120.2°
N1	C2	O2	118.0°	119.6°
N1	C2	N3	118.6°	120.9°
O2	C2	N3	123.4°	119.5°
C2	N3	C4	118.8°	120.2°
C2	N3	HN3	120.6°	119.8°
N3	C4	C5	124.5°	119.4°
N3	C4	O4	119.2°	120.3°
C4	N3	HN3	120.6°	119.9°
C5	C4	O4	116.2°	120.3°
C4	C5	C6	116.4°	119.1°
C4	C5	H5	121.8°	120.5°
C6	C5	H5	121.8°	120.4°
C5	C6	H6	119.0°	120.1°
O2A	PA	O3A	106.2°	109.5°
O2A	PA	O1A	115.0°	109.4°
O2A	PA	O5D	105.4°	109.5°
O3A	PA	O1A	111.6°	109.5°
O3A	PA	O5D	113.5°	109.5°
PA	O3A	PB	133.9°	134.0°
O1A	PA	O5D	105.2°	109.5°
PA	O1A	HO1A	109.5°	114.0°
PA	O5D	C5D	127.2°	123.0°
O2B	PB	O3A	103.7°	109.4°
O2B	PB	O3B	98.5°	109.5°
O2B	PB	O1B	117.7°	109.5°
O3A	PB	O3B	121.5°	109.5°
O3A	PB	O1B	104.4°	109.5°
O3B	PB	O1B	111.6°	109.5°
PB	O3B	C1'	126.7°	123.0°
PB	O1B	HO1B	109.5°	114.0°
O'P	C6'	O'Q	118.1°	120.0°
O'P	C6'	C5'	130.1°	120.0°
C6'	O'Q	HO'Q	109.5°	117.0°
O'Q	C6'	C5'	111.8°	120.0°
O3B	C1'	O5'	107.3°	109.5°
O3B	C1'	C2'	118.1°	109.5°
O3B	C1'	H1'	105.7°	109.5°
O5'	C1'	C2'	111.4°	109.4°
O5'	C1'	H1'	113.2°	109.4°
C1'	O5'	C5'	111.6°	114.1°
C2'	C1'	H1'	101.1°	109.5°
C1'	C2'	C3'	106.6°	109.2°
C1'	C2'	O2'	113.4°	109.5°
C1'	C2'	H2'	110.6°	109.5°
C2D	C1D	O4D	111.3°	103.7°
C2D	C1D	H1D	103.9°	110.6°
C1D	C2D	C3D	98.6°	102.1°
C1D	C2D	O2D	108.1°	110.9°
C1D	C2D	H2D	119.5°	110.9°
O4D	C1D	H1D	107.8°	110.6°
C1D	O4D	C4D	109.1°	106.9°
C3'	C2'	O2'	114.3°	109.5°
C3'	C2'	H2'	109.7°	109.5°
C2'	C3'	C4'	111.0°	109.1°
C2'	C3'	O3'	111.6°	109.6°
C2'	C3'	H3'	106.9°	109.5°
O2'	C2'	H2'	102.3°	109.5°
C2'	O2'	HO2'	109.5°	114.0°
C3D	C2D	O2D	116.1°	110.9°
C3D	C2D	H2D	112.0°	110.9°
C2D	C3D	O3D	115.1°	110.5°
C2D	C3D	C4D	102.0°	104.2°
C2D	C3D	H3D	111.5°	110.5°
O2D	C2D	H2D	103.2°	110.8°
C2D	O2D	HO2D	109.5°	113.9°
C4'	C3'	O3'	109.3°	109.6°
C4'	C3'	H3'	109.3°	109.6°
C3'	C4'	C5'	109.4°	109.2°
C3'	C4'	O4'	111.1°	109.5°
C3'	C4'	H4'	109.0°	109.5°
O3'	C3'	H3'	108.7°	109.5°
C3'	O3'	HO3'	109.5°	114.0°
O3D	C3D	C4D	111.3°	110.5°
O3D	C3D	H3D	102.2°	110.5°
C3D	O3D	HO3D	109.5°	114.0°
C4D	C3D	H3D	115.3°	110.6°
C3D	C4D	C5D	112.9°	109.9°
C3D	C4D	O4D	107.2°	107.4°
C3D	C4D	H4D	112.8°	109.9°
C5'	C4'	O4'	111.3°	109.5°
C5'	C4'	H4'	108.8°	109.6°
C4'	C5'	C6'	110.9°	109.5°
C4'	C5'	O5'	112.1°	109.4°
C4'	C5'	H5'	107.1°	109.5°
O4'	C4'	H4'	107.0°	109.5°
C4'	O4'	HO4'	109.5°	114.0°
C5D	C4D	O4D	119.0°	109.9°
C5D	C4D	H4D	98.9°	110.0°
C4D	C5D	O5D	118.1°	109.5°
C4D	C5D	H5D	106.7°	109.5°
C4D	C5D	H5DA	106.7°	109.4°
O4D	C4D	H4D	105.7°	109.7°
C6'	C5'	O5'	110.6°	109.5°
C6'	C5'	H5'	108.7°	109.5°
O5'	C5'	H5'	107.4°	109.4°
O5D	C5D	H5D	106.7°	109.5°
O5D	C5D	H5DA	106.7°	109.5°
H5D	C5D	H5DA	112.1°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1D	N1	C6	C2	178.8°	179.8°
C1D	N1	C2	O2	1.4°	0.1°
C1D	N1	C2	N3	178.5°	179.7°
C1D	N1	C6	C5	178.8°	179.8°
C1D	N1	C6	H6	1.2°	0.2°
N1	C1D	C2D	O4D	136.3°	118.6°
N1	C1D	C2D	H1D	107.9°	122.8°
N1	C1D	O4D	H1D	109.0°	122.8°
N1	C1D	C2D	C3D	162.0°	155.5°
N1	C1D	C2D	O2D	76.9°	86.3°
N1	C1D	C2D	H2D	40.5°	37.3°
N1	C1D	O4D	C4D	144.4°	158.5°
C6	N1	C2	O2	179.9°	180.0°
C6	N1	C2	N3	0.2°	0.1°
N1	C6	C5	C4	0.4°	0.0°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	H5	179.6°	180.0°
C6	N1	C1D	C2D	67.7°	63.1°
C6	N1	C1D	O4D	67.0°	51.2°
C6	N1	C1D	H1D	178.6°	174.0°
N1	C2	O2	N3	179.9°	179.8°
N1	C2	N3	C4	0.0°	0.1°
C2	N1	C6	C5	0.0°	0.1°
C2	N1	C6	H6	180.0°	180.0°
C2	N1	C1D	C2D	113.5°	117.1°
C2	N1	C1D	O4D	111.7°	128.6°
C2	N1	C1D	H1D	2.6°	5.8°
N1	C2	N3	HN3	180.0°	180.0°
O2	C2	N3	C4	179.9°	179.9°
O2	C2	N3	HN3	0.1°	0.1°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	C5	0.4°	0.0°
C2	N3	C4	O4	179.7°	180.0°
N3	C4	C5	O4	179.3°	180.0°
N3	C4	C5	C6	0.6°	0.0°
N3	C4	C5	H5	179.4°	180.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.6°	179.9°
C5	C4	N3	HN3	179.6°	180.0°
O4	C4	C5	C6	179.9°	180.0°
O4	C4	C5	H5	0.1°	0.0°
O4	C4	N3	HN3	0.3°	0.1°
H5	C5	C6	H6	0.4°	0.0°
O2A	PA	O3A	O1A	126.0°	120.0°
O2A	PA	O3A	O5D	115.3°	120.0°
O2A	PA	O1A	O5D	115.5°	120.0°
O2A	PA	O3A	PB	137.1°	45.0°
O2A	PA	O1A	HO1A	0.0°	179.9°
O2A	PA	O5D	C5D	36.6°	55.0°
O3A	PA	O1A	O5D	123.5°	120.0°
PA	O3A	PB	O2B	136.6°	40.0°
PA	O3A	PB	O3B	114.2°	160.0°
PA	O3A	PB	O1B	12.8°	80.0°
O3A	PA	O1A	HO1A	121.0°	60.0°
O3A	PA	O5D	C5D	79.2°	175.0°
O1A	PA	O3A	PB	96.8°	75.0°
O1A	PA	O5D	C5D	158.5°	64.9°
O5D	PA	O3A	PB	21.8°	165.0°
O5D	PA	O1A	HO1A	115.5°	60.1°
PA	O5D	C5D	C4D	136.4°	180.0°
PA	O5D	C5D	H5D	103.6°	60.0°
PA	O5D	C5D	H5DA	16.4°	60.0°
O2B	PB	O3A	O3B	109.2°	120.0°
O2B	PB	O3A	O1B	123.8°	120.0°
O2B	PB	O3B	O1B	124.4°	120.0°
O2B	PB	O3B	C1'	159.2°	55.0°
O2B	PB	O1B	HO1B	0.0°	180.0°
O3A	PB	O3B	O1B	123.7°	120.0°
O3A	PB	O3B	C1'	88.9°	175.0°
O3A	PB	O1B	HO1B	114.3°	60.0°
PB	O3B	C1'	O5'	108.2°	90.0°
PB	O3B	C1'	C2'	124.9°	150.0°
PB	O3B	C1'	H1'	12.8°	29.9°
O3B	PB	O1B	HO1B	112.8°	60.0°
O1B	PB	O3B	C1'	34.8°	65.0°
O'P	C6'	O'Q	C5'	179.6°	180.0°
O'P	C6'	O'Q	HO'Q	0.0°	0.0°
O'P	C6'	C5'	C4'	26.6°	115.0°
O'P	C6'	C5'	O5'	151.5°	4.9°
O'P	C6'	C5'	H5'	90.8°	124.9°
O'Q	C6'	C5'	C4'	153.8°	65.0°
O'Q	C6'	C5'	O5'	28.9°	175.0°
O'Q	C6'	C5'	H5'	88.8°	55.1°
HO'Q	O'Q	C6'	C5'	179.7°	180.0°
O3B	C1'	O5'	C2'	130.7°	120.0°
O3B	C1'	O5'	H1'	116.2°	120.0°
O3B	C1'	C2'	H1'	114.6°	120.0°
O3B	C1'	C2'	C3'	65.4°	62.4°
O3B	C1'	C2'	O2'	61.2°	57.5°
O3B	C1'	C2'	H2'	175.4°	177.6°
O3B	C1'	O5'	C5'	64.4°	58.9°
O5'	C1'	C2'	H1'	120.5°	120.0°
O5'	C1'	C2'	C3'	59.4°	57.6°
O5'	C1'	C2'	O2'	174.0°	177.5°
O5'	C1'	C2'	H2'	59.7°	62.3°
C1'	O5'	C5'	C4'	62.9°	61.1°
C1'	O5'	C5'	C6'	172.9°	178.9°
C1'	O5'	C5'	H5'	54.4°	58.8°
C1'	C2'	C3'	O2'	126.1°	119.9°
C1'	C2'	C3'	H2'	119.7°	119.9°
C1'	C2'	O2'	H2'	119.1°	120.1°
C1'	C2'	O2'	HO2'	180.0°	60.0°
C1'	C2'	C3'	C4'	52.0°	56.9°
C1'	C2'	C3'	O3'	174.2°	176.9°
C1'	C2'	C3'	H3'	67.1°	63.0°
C2'	C1'	O5'	C5'	66.3°	61.2°
H1'	C1'	C2'	C3'	179.9°	177.5°
H1'	C1'	C2'	O2'	53.5°	62.5°
H1'	C1'	C2'	H2'	60.8°	57.6°
H1'	C1'	O5'	C5'	179.4°	178.9°
C2D	C1D	O4D	H1D	113.3°	118.6°
C1D	C2D	C3D	O2D	115.1°	118.2°
C1D	C2D	C3D	H2D	126.8°	118.2°
C1D	C2D	O2D	H2D	127.5°	123.6°
C1D	C2D	O2D	HO2D	180.0°	180.0°
C1D	C2D	C3D	O3D	88.5°	97.8°
C1D	C2D	C3D	C4D	32.1°	20.9°
C1D	C2D	C3D	H3D	155.6°	139.7°
C2D	C1D	O4D	C4D	6.8°	39.8°
O4D	C1D	C2D	C3D	25.6°	36.9°
O4D	C1D	C2D	O2D	146.8°	155.1°
O4D	C1D	C2D	H2D	95.8°	81.3°
C1D	O4D	C4D	C3D	15.7°	26.3°
C1D	O4D	C4D	C5D	113.8°	145.8°
C1D	O4D	C4D	H4D	136.3°	93.1°
H1D	C1D	C2D	C3D	90.1°	81.6°
H1D	C1D	C2D	O2D	31.0°	36.6°
H1D	C1D	C2D	H2D	148.5°	160.1°
H1D	C1D	O4D	C4D	106.5°	78.8°
C3'	C2'	O2'	H2'	118.4°	120.2°
C3'	C2'	O2'	HO2'	57.5°	179.7°
C2'	C3'	C4'	O3'	123.5°	119.9°
C2'	C3'	C4'	H3'	117.7°	119.9°
C2'	C3'	O3'	H3'	117.7°	120.1°
C2'	C3'	O3'	HO3'	180.0°	60.0°
C2'	C3'	C4'	C5'	50.2°	56.9°
C2'	C3'	C4'	O4'	73.2°	63.0°
C2'	C3'	C4'	H4'	169.1°	177.0°
O2'	C2'	C3'	C4'	178.1°	176.9°
O2'	C2'	C3'	O3'	59.7°	63.2°
O2'	C2'	C3'	H3'	59.0°	56.9°
H2'	C2'	O2'	HO2'	60.9°	60.2°
H2'	C2'	C3'	C4'	67.7°	63.0°
H2'	C2'	C3'	O3'	54.4°	56.9°
H2'	C2'	C3'	H3'	173.2°	177.1°
C3D	C2D	O2D	H2D	122.9°	123.7°
C3D	C2D	O2D	HO2D	70.4°	67.3°
C2D	C3D	O3D	C4D	115.4°	114.7°
C2D	C3D	O3D	H3D	121.0°	122.5°
C2D	C3D	C4D	H3D	121.0°	118.7°
C2D	C3D	O3D	HO3D	180.0°	61.5°
C2D	C3D	C4D	C5D	101.5°	121.5°
C2D	C3D	C4D	O4D	31.4°	1.9°
C2D	C3D	C4D	H4D	147.4°	117.4°
O2D	C2D	C3D	O3D	26.6°	20.4°
O2D	C2D	C3D	C4D	147.2°	139.1°
O2D	C2D	C3D	H3D	89.3°	102.1°
H2D	C2D	O2D	HO2D	52.5°	56.4°
H2D	C2D	C3D	O3D	144.7°	144.0°
H2D	C2D	C3D	C4D	94.7°	97.3°
H2D	C2D	C3D	H3D	28.9°	21.5°
C4'	C3'	O3'	H3'	119.2°	120.3°
C4'	C3'	O3'	HO3'	56.8°	179.6°
C3'	C4'	C5'	O4'	123.2°	119.9°
C3'	C4'	C5'	H4'	119.0°	120.0°
C3'	C4'	O4'	H4'	118.9°	120.1°
C3'	C4'	O4'	HO4'	180.0°	180.0°
C3'	C4'	C5'	C6'	178.4°	177.6°
C3'	C4'	C5'	O5'	54.3°	57.6°
C3'	C4'	C5'	H5'	63.2°	62.4°
O3'	C3'	C4'	C5'	173.7°	176.9°
O3'	C3'	C4'	O4'	50.3°	57.0°
O3'	C3'	C4'	H4'	67.4°	63.1°
H3'	C3'	O3'	HO3'	62.3°	60.2°
H3'	C3'	C4'	C5'	67.5°	63.0°
H3'	C3'	C4'	O4'	169.2°	177.2°
H3'	C3'	C4'	H4'	51.4°	57.1°
O3D	C3D	C4D	H3D	115.8°	122.7°
O3D	C3D	C4D	C5D	135.3°	119.9°
O3D	C3D	C4D	O4D	91.8°	120.6°
O3D	C3D	C4D	H4D	24.2°	1.3°
C4D	C3D	O3D	HO3D	64.6°	176.2°
C3D	C4D	C5D	O4D	126.9°	118.0°
C3D	C4D	C5D	H4D	119.5°	121.1°
C3D	C4D	O4D	H4D	120.6°	119.4°
C3D	C4D	C5D	O5D	68.1°	175.0°
C3D	C4D	C5D	H5D	171.9°	55.0°
C3D	C4D	C5D	H5DA	51.9°	65.0°
H3D	C3D	O3D	HO3D	59.0°	61.0°
H3D	C3D	C4D	C5D	19.5°	2.8°
H3D	C3D	C4D	O4D	152.4°	116.8°
H3D	C3D	C4D	H4D	91.6°	123.9°
C5'	C4'	O4'	H4'	118.8°	120.2°
C5'	C4'	O4'	HO4'	57.8°	60.3°
C4'	C5'	C6'	O5'	124.9°	120.0°
C4'	C5'	C6'	H5'	117.4°	120.0°
C4'	C5'	O5'	H5'	117.3°	120.0°
O4'	C4'	C5'	C6'	55.2°	57.7°
O4'	C4'	C5'	O5'	68.9°	62.3°
O4'	C4'	C5'	H5'	173.6°	177.7°
H4'	C4'	O4'	HO4'	61.0°	59.9°
H4'	C4'	C5'	C6'	62.5°	62.4°
H4'	C4'	C5'	O5'	173.4°	177.6°
H4'	C4'	C5'	H5'	55.9°	57.6°
C5D	C4D	O4D	H4D	109.9°	121.1°
C4D	C5D	O5D	H5D	120.0°	120.0°
C4D	C5D	O5D	H5DA	120.0°	120.0°
C4D	C5D	H5D	H5DA	116.5°	119.9°
O4D	C4D	C5D	O5D	58.8°	67.1°
O4D	C4D	C5D	H5D	61.2°	173.0°
O4D	C4D	C5D	H5DA	178.8°	53.0°
H4D	C4D	C5D	O5D	172.4°	53.9°
H4D	C4D	C5D	H5D	52.4°	66.1°
H4D	C4D	C5D	H5DA	67.6°	173.9°
C6'	C5'	O5'	H5'	118.4°	120.0°
O5D	C5D	H5D	H5DA	116.5°	120.1°

Definition date:	2010-08-24
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	3OH1