UFR
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3P | P | doub | 1.48Å | 1.60Å | |
| P | O1P | sing | 1.61Å | 1.49Å | |
| P | O2P | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| O1P | HO1P | sing | 0.97Å | 0.95Å | |
| O2P | HO2P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.45Å | 1.44Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C1' | N1 | sing | 1.46Å | 1.47Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.36Å | 1.37Å | |
| C2 | O2 | doub | 1.22Å | 1.21Å | |
| C2 | N3 | sing | 1.34Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.47Å | 1.43Å | |
| C5 | C6 | doub | 1.39Å | 1.34Å | |
| C5 | C7 | sing | 1.46Å | 1.50Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C7 | O5 | doub | 1.21Å | 1.23Å | |
| C7 | H7 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3P | P | O1P | 106.4° | 109.5° |
| O3P | P | O2P | 110.4° | 109.5° |
| O3P | P | O5' | 103.2° | 109.5° |
| O1P | P | O2P | 120.1° | 109.5° |
| O1P | P | O5' | 107.3° | 109.5° |
| P | O1P | HO1P | 109.5° | 106.8° |
| O2P | P | O5' | 108.1° | 109.5° |
| P | O2P | HO2P | 109.5° | 106.8° |
| P | O5' | C5' | 120.3° | 106.8° |
| O5' | C5' | C4' | 109.6° | 109.5° |
| O5' | C5' | H5'1 | 109.4° | 109.5° |
| O5' | C5' | H5'2 | 109.4° | 109.5° |
| C4' | C5' | H5'1 | 109.5° | 109.5° |
| C4' | C5' | H5'2 | 109.4° | 109.4° |
| C5' | C4' | O4' | 109.2° | 110.4° |
| C5' | C4' | C3' | 114.1° | 110.7° |
| C5' | C4' | H4' | 105.4° | 110.3° |
| H5'1 | C5' | H5'2 | 109.5° | 109.4° |
| O4' | C4' | C3' | 106.0° | 104.7° |
| O4' | C4' | H4' | 113.6° | 110.4° |
| C4' | O4' | C1' | 107.8° | 105.4° |
| C3' | C4' | H4' | 108.7° | 110.3° |
| C4' | C3' | O3' | 108.4° | 110.6° |
| C4' | C3' | C2' | 104.8° | 104.2° |
| C4' | C3' | H3' | 114.4° | 110.5° |
| O4' | C1' | C2' | 105.2° | 104.8° |
| O4' | C1' | N1 | 107.4° | 110.5° |
| O4' | C1' | H1' | 115.6° | 110.4° |
| O3' | C3' | C2' | 112.9° | 110.5° |
| O3' | C3' | H3' | 106.5° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 106.9° |
| C2' | C3' | H3' | 110.0° | 110.5° |
| C3' | C2' | C1' | 103.8° | 104.1° |
| C3' | C2' | H2'1 | 111.4° | 110.5° |
| C3' | C2' | H2'2 | 112.6° | 110.5° |
| C1' | C2' | H2'1 | 111.4° | 110.5° |
| C1' | C2' | H2'2 | 112.6° | 110.5° |
| C2' | C1' | N1 | 115.1° | 110.4° |
| C2' | C1' | H1' | 108.0° | 110.3° |
| H2'1 | C2' | H2'2 | 105.2° | 110.6° |
| N1 | C1' | H1' | 105.8° | 110.4° |
| C1' | N1 | C2 | 117.9° | 119.2° |
| C1' | N1 | C6 | 121.1° | 119.2° |
| C2 | N1 | C6 | 121.1° | 121.5° |
| N1 | C2 | O2 | 122.6° | 118.9° |
| N1 | C2 | N3 | 115.0° | 122.3° |
| N1 | C6 | C5 | 123.0° | 119.3° |
| N1 | C6 | H6 | 118.5° | 120.3° |
| O2 | C2 | N3 | 122.4° | 118.8° |
| C2 | N3 | C4 | 127.0° | 120.4° |
| C2 | N3 | HN3 | 116.5° | 119.8° |
| C4 | N3 | HN3 | 116.5° | 119.8° |
| N3 | C4 | O4 | 119.3° | 120.7° |
| N3 | C4 | C5 | 114.5° | 118.5° |
| O4 | C4 | C5 | 126.1° | 120.7° |
| C4 | C5 | C6 | 119.4° | 118.0° |
| C4 | C5 | C7 | 118.7° | 121.0° |
| C6 | C5 | C7 | 121.8° | 121.0° |
| C5 | C6 | H6 | 118.5° | 120.4° |
| C5 | C7 | O5 | 121.0° | 120.0° |
| C5 | C7 | H7 | 119.5° | 120.0° |
| O5 | C7 | H7 | 119.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3P | P | O1P | O2P | 126.1° | 120.0° |
| O3P | P | O1P | O5' | 110.0° | 120.0° |
| O3P | P | O2P | O5' | 112.2° | 120.0° |
| O3P | P | O1P | HO1P | 8.1° | 180.0° |
| O3P | P | O2P | HO2P | 38.8° | 60.0° |
| O3P | P | O5' | C5' | 54.6° | 55.0° |
| O1P | P | O2P | O5' | 123.5° | 120.0° |
| O1P | P | O2P | HO2P | 85.5° | 60.0° |
| O1P | P | O5' | C5' | 57.6° | 65.0° |
| O2P | P | O1P | HO1P | 118.0° | 60.0° |
| O2P | P | O5' | C5' | 171.5° | 175.0° |
| O5' | P | O1P | HO1P | 118.1° | 60.0° |
| O5' | P | O2P | HO2P | 151.0° | 180.0° |
| P | O5' | C5' | C4' | 170.5° | 180.0° |
| P | O5' | C5' | H5'1 | 69.5° | 59.9° |
| P | O5' | C5' | H5'2 | 50.5° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.1° |
| O5' | C5' | C4' | H5'2 | 120.0° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 120.0° | 120.0° |
| O5' | C5' | C4' | O4' | 65.9° | 66.4° |
| O5' | C5' | C4' | C3' | 52.5° | 178.1° |
| O5' | C5' | C4' | H4' | 171.7° | 55.8° |
| C4' | C5' | H5'1 | H5'2 | 119.9° | 119.9° |
| C5' | C4' | O4' | C3' | 123.4° | 119.1° |
| C5' | C4' | O4' | H4' | 117.3° | 122.2° |
| C5' | C4' | C3' | H4' | 117.3° | 122.3° |
| C5' | C4' | O4' | C1' | 151.6° | 159.5° |
| C5' | C4' | C3' | O3' | 110.8° | 98.5° |
| C5' | C4' | C3' | C2' | 128.4° | 142.7° |
| C5' | C4' | C3' | H3' | 7.9° | 24.0° |
| H5'1 | C5' | C4' | O4' | 174.1° | 173.5° |
| H5'1 | C5' | C4' | C3' | 67.5° | 58.1° |
| H5'1 | C5' | C4' | H4' | 51.7° | 64.3° |
| H5'2 | C5' | C4' | O4' | 54.0° | 53.6° |
| H5'2 | C5' | C4' | C3' | 172.5° | 61.9° |
| H5'2 | C5' | C4' | H4' | 68.4° | 175.8° |
| O4' | C4' | C3' | H4' | 122.5° | 118.7° |
| O4' | C4' | C3' | O3' | 129.0° | 142.5° |
| O4' | C4' | C3' | C2' | 8.2° | 23.8° |
| O4' | C4' | C3' | H3' | 112.4° | 94.9° |
| C4' | O4' | C1' | C2' | 36.7° | 40.4° |
| C4' | O4' | C1' | N1 | 159.8° | 159.3° |
| C4' | O4' | C1' | H1' | 82.3° | 78.3° |
| C3' | C4' | O4' | C1' | 28.2° | 40.3° |
| C4' | C3' | O3' | C2' | 115.6° | 114.8° |
| C4' | C3' | O3' | H3' | 123.6° | 122.6° |
| C4' | C3' | C2' | H3' | 123.4° | 118.7° |
| C4' | C3' | O3' | HO3' | 165.0° | 178.1° |
| C4' | C3' | C2' | C1' | 12.7° | 0.1° |
| C4' | C3' | C2' | H2'1 | 132.7° | 118.5° |
| C4' | C3' | C2' | H2'2 | 109.4° | 118.8° |
| H4' | C4' | O4' | C1' | 91.1° | 78.3° |
| H4' | C4' | C3' | O3' | 6.5° | 23.8° |
| H4' | C4' | C3' | C2' | 114.3° | 94.9° |
| H4' | C4' | C3' | H3' | 125.2° | 146.4° |
| O4' | C1' | C2' | C3' | 30.0° | 24.0° |
| O4' | C1' | C2' | N1 | 118.0° | 119.0° |
| O4' | C1' | C2' | H1' | 124.0° | 118.8° |
| O4' | C1' | C2' | H2'1 | 150.0° | 94.7° |
| O4' | C1' | C2' | H2'2 | 92.1° | 142.6° |
| O4' | C1' | N1 | H1' | 124.0° | 122.4° |
| O4' | C1' | N1 | C2 | 129.6° | 50.1° |
| O4' | C1' | N1 | C6 | 49.5° | 129.6° |
| O3' | C3' | C2' | H3' | 118.8° | 122.5° |
| O3' | C3' | C2' | C1' | 105.0° | 118.7° |
| O3' | C3' | C2' | H2'1 | 15.0° | 122.7° |
| O3' | C3' | C2' | H2'2 | 132.9° | 0.0° |
| C2' | C3' | O3' | HO3' | 49.4° | 63.3° |
| C3' | C2' | C1' | H2'1 | 120.0° | 118.6° |
| C3' | C2' | C1' | H2'2 | 122.1° | 118.7° |
| C3' | C2' | H2'1 | H2'2 | 122.3° | 122.7° |
| C3' | C2' | C1' | N1 | 148.0° | 142.9° |
| C3' | C2' | C1' | H1' | 94.1° | 94.8° |
| H3' | C3' | O3' | HO3' | 71.4° | 59.3° |
| H3' | C3' | C2' | C1' | 136.1° | 118.8° |
| H3' | C3' | C2' | H2'1 | 103.8° | 0.2° |
| H3' | C3' | C2' | H2'2 | 14.0° | 122.5° |
| C1' | C2' | H2'1 | H2'2 | 122.3° | 122.7° |
| C2' | C1' | N1 | H1' | 119.2° | 122.2° |
| C2' | C1' | N1 | C2 | 113.7° | 65.3° |
| C2' | C1' | N1 | C6 | 67.3° | 115.0° |
| H2'1 | C2' | C1' | N1 | 92.0° | 24.3° |
| H2'1 | C2' | C1' | H1' | 25.9° | 146.5° |
| H2'2 | C2' | C1' | N1 | 25.9° | 98.4° |
| H2'2 | C2' | C1' | H1' | 143.9° | 23.8° |
| C1' | N1 | C2 | C6 | 179.1° | 179.7° |
| C1' | N1 | C2 | O2 | 3.1° | 0.3° |
| C1' | N1 | C2 | N3 | 177.1° | 179.8° |
| C1' | N1 | C6 | C5 | 177.2° | 180.0° |
| C1' | N1 | C6 | H6 | 2.8° | 0.1° |
| H1' | C1' | N1 | C2 | 5.5° | 172.5° |
| H1' | C1' | N1 | C6 | 173.6° | 7.2° |
| N1 | C2 | O2 | N3 | 179.8° | 179.5° |
| N1 | C2 | N3 | C4 | 0.6° | 0.6° |
| N1 | C2 | N3 | HN3 | 179.3° | 179.7° |
| C2 | N1 | C6 | C5 | 1.9° | 0.3° |
| C2 | N1 | C6 | H6 | 178.1° | 179.8° |
| C6 | N1 | C2 | O2 | 177.8° | 179.9° |
| C6 | N1 | C2 | N3 | 2.0° | 0.6° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | C7 | 177.4° | 180.0° |
| O2 | C2 | N3 | C4 | 179.2° | 179.9° |
| O2 | C2 | N3 | HN3 | 0.8° | 0.2° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 176.2° | 179.7° |
| C2 | N3 | C4 | C5 | 0.8° | 0.3° |
| N3 | C4 | O4 | C5 | 176.6° | 180.0° |
| N3 | C4 | C5 | C6 | 1.0° | 0.0° |
| N3 | C4 | C5 | C7 | 176.2° | 180.0° |
| HN3 | N3 | C4 | O4 | 3.8° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.2° | 180.0° |
| O4 | C4 | C5 | C6 | 175.7° | 180.0° |
| O4 | C4 | C5 | C7 | 7.1° | 0.0° |
| C4 | C5 | C6 | C7 | 177.1° | 180.0° |
| C4 | C5 | C6 | H6 | 179.7° | 180.0° |
| C4 | C5 | C7 | O5 | 3.1° | 0.1° |
| C4 | C5 | C7 | H7 | 176.9° | 180.0° |
| C6 | C5 | C7 | O5 | 179.8° | 180.0° |
| C6 | C5 | C7 | H7 | 0.2° | 0.1° |
| C7 | C5 | C6 | H6 | 2.6° | 0.1° |
| C5 | C7 | O5 | H7 | 180.0° | 179.9° |
