UFB
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CM | OM | sing | 1.43Å | 1.43Å | |
| OM | C4' | sing | 1.43Å | 1.45Å | |
| OP2 | P | doub | 1.48Å | 1.61Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C4' | C3' | sing | 1.55Å | 1.54Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5 | C4 | sing | 1.42Å | 1.39Å | |
| C6 | N1 | sing | 1.37Å | 1.41Å | |
| O4' | C1' | sing | 1.44Å | 1.46Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| P | OP1 | sing | 1.61Å | 1.48Å | |
| O4 | C4 | doub | 1.22Å | 1.23Å | |
| C4 | N3 | sing | 1.35Å | 1.39Å | |
| C3' | O3' | sing | 1.43Å | 1.45Å | |
| C3' | C2' | sing | 1.54Å | 1.49Å | |
| N1 | C1' | sing | 1.47Å | 1.49Å | |
| N1 | C2 | sing | 1.35Å | 1.34Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C2' | F2' | sing | 1.40Å | 1.35Å | |
| N3 | C2 | sing | 1.35Å | 1.40Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| P | OP3 | sing | 1.61Å | 1.61Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5S | sing | 1.09Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| CM | HM3 | sing | 1.09Å | 1.10Å | |
| CM | HM1 | sing | 1.09Å | 1.10Å | |
| CM | HM2 | sing | 1.09Å | 1.10Å | |
| N3 | H3 | sing | 0.97Å | 1.00Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| OP1 | H2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CM | OM | C4' | 113.5° | 114.0° |
| OM | CM | HM3 | 109.5° | 109.5° |
| OM | CM | HM1 | 109.5° | 109.5° |
| OM | CM | HM2 | 109.5° | 109.5° |
| OM | C4' | C5' | 108.3° | 110.4° |
| OM | C4' | O4' | 118.2° | 110.4° |
| OM | C4' | C3' | 108.2° | 110.3° |
| OP2 | P | O5' | 105.3° | 109.5° |
| OP2 | P | OP1 | 112.8° | 109.5° |
| OP2 | P | OP3 | 110.6° | 109.5° |
| C4' | C5' | O5' | 110.9° | 109.5° |
| C5' | C4' | O4' | 104.2° | 110.4° |
| C5' | C4' | C3' | 111.9° | 110.4° |
| C4' | C5' | H5' | 109.1° | 109.5° |
| C4' | C5' | H5S | 109.1° | 109.5° |
| C5' | O5' | P | 119.9° | 123.0° |
| O5' | C5' | H5' | 109.1° | 109.4° |
| O5' | C5' | H5S | 109.1° | 109.5° |
| O4' | C4' | C3' | 106.0° | 104.8° |
| C4' | O4' | C1' | 107.0° | 105.3° |
| C4' | C3' | O3' | 108.3° | 110.5° |
| C4' | C3' | C2' | 101.0° | 104.1° |
| C4' | C3' | H3' | 110.8° | 110.7° |
| C6 | C5 | C4 | 119.6° | 119.1° |
| C5 | C6 | N1 | 120.2° | 119.7° |
| C6 | C5 | H5 | 120.2° | 120.4° |
| C5 | C6 | H6 | 119.9° | 120.2° |
| C5 | C4 | O4 | 120.8° | 120.2° |
| C5 | C4 | N3 | 119.4° | 119.4° |
| C4 | C5 | H5 | 120.2° | 120.5° |
| C6 | N1 | C1' | 120.6° | 119.7° |
| C6 | N1 | C2 | 120.0° | 120.6° |
| N1 | C6 | H6 | 119.9° | 120.1° |
| O4' | C1' | N1 | 105.0° | 110.5° |
| O4' | C1' | C2' | 103.3° | 104.8° |
| O4' | C1' | H1' | 109.6° | 110.4° |
| O5' | P | OP1 | 112.5° | 109.5° |
| O5' | P | OP3 | 104.5° | 109.5° |
| OP1 | P | OP3 | 110.7° | 109.4° |
| P | OP1 | H2 | 109.5° | 114.0° |
| O4 | C4 | N3 | 119.8° | 120.3° |
| C4 | N3 | C2 | 120.2° | 120.3° |
| C4 | N3 | H3 | 119.9° | 119.9° |
| O3' | C3' | C2' | 112.5° | 110.5° |
| O3' | C3' | H3' | 112.2° | 110.5° |
| C3' | O3' | H1 | 109.5° | 114.0° |
| C3' | C2' | C1' | 100.4° | 104.1° |
| C3' | C2' | F2' | 110.2° | 110.6° |
| C3' | C2' | H2' | 111.6° | 110.6° |
| C2' | C3' | H3' | 111.5° | 110.5° |
| C1' | N1 | C2 | 119.3° | 119.7° |
| N1 | C1' | C2' | 120.5° | 110.4° |
| N1 | C1' | H1' | 109.2° | 110.3° |
| N1 | C2 | N3 | 120.7° | 120.9° |
| N1 | C2 | O2 | 120.5° | 119.5° |
| C1' | C2' | F2' | 108.4° | 110.5° |
| C2' | C1' | H1' | 108.7° | 110.4° |
| C1' | C2' | H2' | 111.1° | 110.5° |
| F2' | C2' | H2' | 114.2° | 110.4° |
| N3 | C2 | O2 | 118.9° | 119.6° |
| C2 | N3 | H3 | 119.9° | 119.8° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| H5' | C5' | H5S | 109.5° | 109.5° |
| HM3 | CM | HM1 | 109.5° | 109.5° |
| HM3 | CM | HM2 | 109.5° | 109.4° |
| HM1 | CM | HM2 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CM | OM | C4' | C5' | 68.3° | 67.7° |
| CM | OM | C4' | O4' | 49.7° | 54.7° |
| CM | OM | C4' | C3' | 170.1° | 170.1° |
| OM | CM | HM3 | HM1 | 120.0° | 120.1° |
| OM | CM | HM3 | HM2 | 120.0° | 120.0° |
| OM | CM | HM1 | HM2 | 120.0° | 120.0° |
| OM | C4' | C5' | O4' | 126.6° | 122.4° |
| OM | C4' | C5' | C3' | 119.3° | 122.3° |
| OM | C4' | C5' | O5' | 176.8° | 64.5° |
| OM | C4' | O4' | C3' | 121.6° | 118.8° |
| OM | C4' | O4' | C1' | 123.3° | 78.3° |
| OM | C4' | C3' | O3' | 84.4° | 146.5° |
| OM | C4' | C3' | C2' | 157.3° | 94.9° |
| OM | C4' | C3' | H3' | 39.1° | 23.8° |
| OM | C4' | C5' | H5' | 56.6° | 175.5° |
| OM | C4' | C5' | H5S | 63.0° | 55.5° |
| C4' | OM | CM | HM3 | 180.0° | 172.7° |
| C4' | OM | CM | HM1 | 60.0° | 52.6° |
| C4' | OM | CM | HM2 | 60.0° | 67.4° |
| OP2 | P | O5' | C5' | 1.5° | 55.0° |
| OP2 | P | O5' | OP1 | 123.2° | 120.0° |
| OP2 | P | O5' | OP3 | 116.6° | 120.0° |
| OP2 | P | OP1 | OP3 | 124.5° | 119.9° |
| OP2 | P | OP1 | H2 | 0.0° | 60.0° |
| OP2 | P | OP3 | HOP3 | 0.0° | 180.0° |
| C4' | C5' | O5' | H5' | 120.2° | 120.0° |
| C4' | C5' | O5' | H5S | 120.2° | 120.0° |
| C5' | C4' | O4' | C3' | 118.3° | 118.8° |
| C5' | C4' | O4' | C1' | 116.6° | 159.3° |
| C4' | C5' | O5' | P | 165.9° | 180.0° |
| C5' | C4' | C3' | O3' | 34.9° | 24.2° |
| C5' | C4' | C3' | C2' | 83.4° | 142.8° |
| C5' | C4' | C3' | H3' | 158.4° | 98.5° |
| C4' | C5' | H5' | H5S | 119.4° | 120.0° |
| O5' | C5' | C4' | O4' | 56.5° | 57.8° |
| O5' | C5' | C4' | C3' | 57.6° | 173.2° |
| C5' | O5' | P | OP1 | 124.7° | 175.0° |
| C5' | O5' | P | OP3 | 115.1° | 65.0° |
| O5' | C5' | H5' | H5S | 119.3° | 120.0° |
| O4' | C4' | C3' | O3' | 147.9° | 94.6° |
| O4' | C4' | C3' | C2' | 29.5° | 23.9° |
| C4' | O4' | C1' | N1 | 100.8° | 78.4° |
| C4' | O4' | C1' | C2' | 26.3° | 40.5° |
| C4' | O4' | C1' | H1' | 142.0° | 159.4° |
| O4' | C4' | C3' | H3' | 88.6° | 142.7° |
| O4' | C4' | C5' | H5' | 176.8° | 62.1° |
| O4' | C4' | C5' | H5S | 63.6° | 177.8° |
| C3' | C4' | O4' | C1' | 1.7° | 40.5° |
| C4' | C3' | O3' | C2' | 110.8° | 114.6° |
| C4' | C3' | O3' | H3' | 122.6° | 122.8° |
| C4' | C3' | C2' | H3' | 117.7° | 118.8° |
| C4' | C3' | C2' | C1' | 44.4° | 0.0° |
| C4' | C3' | C2' | F2' | 69.8° | 118.6° |
| C4' | C3' | C2' | H2' | 162.2° | 118.7° |
| C3' | C4' | C5' | H5' | 62.6° | 53.2° |
| C3' | C4' | C5' | H5S | 177.8° | 66.8° |
| C4' | C3' | O3' | H1 | 180.0° | 176.1° |
| C6 | C5 | C4 | H5 | 180.0° | 179.7° |
| C5 | C6 | N1 | H6 | 180.0° | 179.8° |
| C6 | C5 | C4 | O4 | 179.9° | 179.8° |
| C6 | C5 | C4 | N3 | 0.0° | 0.3° |
| C5 | C6 | N1 | C1' | 178.2° | 180.0° |
| C5 | C6 | N1 | C2 | 2.1° | 0.0° |
| C4 | C5 | C6 | N1 | 1.0° | 0.3° |
| C5 | C4 | O4 | N3 | 179.9° | 180.0° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| C4 | C5 | C6 | H6 | 179.0° | 180.0° |
| C5 | C4 | N3 | H3 | 179.9° | 179.9° |
| C6 | N1 | C1' | O4' | 10.1° | 89.6° |
| C6 | N1 | C1' | C2 | 176.1° | 180.0° |
| C6 | N1 | C1' | C2' | 105.6° | 25.8° |
| C6 | N1 | C2 | N3 | 2.1° | 0.3° |
| C6 | N1 | C2 | O2 | 178.9° | 179.9° |
| C6 | N1 | C1' | H1' | 127.5° | 148.1° |
| N1 | C6 | C5 | H5 | 178.9° | 180.0° |
| O4' | C1' | C2' | C3' | 44.7° | 24.0° |
| O4' | C1' | N1 | C2' | 115.7° | 115.4° |
| O4' | C1' | N1 | H1' | 117.5° | 122.3° |
| O4' | C1' | N1 | C2 | 166.1° | 90.4° |
| O4' | C1' | C2' | H1' | 116.3° | 118.8° |
| O4' | C1' | C2' | F2' | 70.8° | 94.7° |
| O4' | C1' | C2' | H2' | 162.9° | 142.8° |
| O5' | P | OP1 | OP3 | 116.5° | 120.0° |
| P | O5' | C5' | H5' | 73.9° | 60.0° |
| P | O5' | C5' | H5S | 45.7° | 60.0° |
| O5' | P | OP1 | H2 | 119.0° | 180.0° |
| O5' | P | OP3 | HOP3 | 112.9° | 59.9° |
| OP1 | P | OP3 | HOP3 | 125.7° | 60.1° |
| O4 | C4 | N3 | C2 | 180.0° | 180.0° |
| O4 | C4 | C5 | H5 | 0.1° | 0.0° |
| O4 | C4 | N3 | H3 | 0.0° | 0.1° |
| C4 | N3 | C2 | N1 | 1.0° | 0.3° |
| C4 | N3 | C2 | H3 | 180.0° | 179.9° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| N3 | C4 | C5 | H5 | 180.0° | 180.0° |
| O3' | C3' | C2' | H3' | 127.0° | 122.6° |
| O3' | C3' | C2' | C1' | 159.7° | 118.6° |
| O3' | C3' | C2' | F2' | 45.5° | 0.0° |
| O3' | C3' | C2' | H2' | 82.5° | 122.7° |
| C3' | C2' | C1' | N1 | 71.9° | 94.9° |
| C3' | C2' | C1' | F2' | 115.5° | 118.7° |
| C3' | C2' | C1' | H2' | 118.2° | 118.8° |
| C3' | C2' | F2' | H2' | 126.6° | 122.8° |
| C3' | C2' | C1' | H1' | 161.0° | 142.8° |
| C2' | C3' | O3' | H1 | 69.3° | 61.5° |
| N1 | C1' | C2' | H1' | 127.0° | 122.3° |
| N1 | C1' | C2' | F2' | 172.6° | 146.4° |
| C1' | N1 | C2 | N3 | 178.2° | 179.7° |
| C1' | N1 | C2 | O2 | 2.7° | 0.1° |
| N1 | C1' | C2' | H2' | 46.3° | 23.9° |
| C1' | N1 | C6 | H6 | 1.8° | 0.2° |
| C2 | N1 | C1' | C2' | 78.2° | 154.2° |
| N1 | C2 | N3 | O2 | 179.1° | 179.8° |
| C2 | N1 | C1' | H1' | 48.6° | 31.9° |
| C2 | N1 | C6 | H6 | 177.9° | 179.8° |
| N1 | C2 | N3 | H3 | 179.0° | 179.7° |
| C1' | C2' | F2' | H2' | 124.5° | 122.5° |
| C1' | C2' | C3' | H3' | 73.3° | 118.8° |
| F2' | C2' | C1' | H1' | 45.5° | 24.1° |
| F2' | C2' | C3' | H3' | 172.5° | 122.6° |
| O2 | C2 | N3 | H3 | 0.1° | 0.1° |
| OP3 | P | OP1 | H2 | 124.5° | 60.0° |
| H1' | C1' | C2' | H2' | 80.7° | 98.4° |
| H2' | C2' | C3' | H3' | 44.5° | 0.1° |
| H3' | C3' | O3' | H1 | 57.3° | 61.1° |
| H5 | C5 | C6 | H6 | 1.0° | 0.2° |
| HM3 | CM | HM1 | HM2 | 120.0° | 119.9° |
