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UDN

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4doub1.22Å1.20Å
N3C4sing1.35Å1.33Å
N3C2sing1.35Å1.34Å
C4C5sing1.42Å1.39Å
O2C2doub1.22Å1.21Å
C2N1sing1.35Å1.37Å
O2'C2Dsing1.43Å1.41Å
C5C6doub1.35Å1.38Å
N1C6sing1.37Å1.33Å
N1C1Dsing1.46Å1.48Å
C2DC1Dsing1.55Å1.43Å
C2DC3Dsing1.55Å1.40Å
C1DO4Dsing1.44Å1.29Å
C3DO3Dsing1.43Å1.40Å
C3DC4Dsing1.54Å1.41Å
O4DC4Dsing1.43Å1.29Å
C4DC5Dsing1.53Å1.51Å
C5DO5Dsing1.43Å1.40Å
O5DPAsing1.61Å1.64Å
O2APAdoub1.48Å1.48Å
PAO1Asing1.61Å1.47Å
PAO3Asing1.61Å1.68Å
O3APBsing1.61Å1.66Å
PBO1Bdoub1.48Å1.44Å
PBO2Bsing1.61Å1.46Å
PBCBsing1.82Å1.68Å
C6'C5'sing1.53Å1.49Å
C6'O6'sing1.43Å1.42Å
CBC1'sing1.53Å1.39Å
C5'O5'sing1.43Å1.51Å
C5'C4'sing1.53Å1.52Å
O5'C1'sing1.43Å1.48Å
C1'C2'sing1.53Å1.52Å
C4'C3'sing1.53Å1.51Å
C4'O4'sing1.43Å1.43Å
C3'C2'sing1.53Å1.52Å
C3'O3'sing1.43Å1.44Å
C2'N2'sing1.46Å1.50Å
N2'C7'sing1.35Å1.45Å
C7'C8'sing1.51Å1.53Å
C7'O7'doub1.21Å1.20Å
C1'H1sing1.09Å1.10Å
C2'H2sing1.09Å1.10Å
C3'H3sing1.09Å1.10Å
C4'H4sing1.09Å1.10Å
C5'H5sing1.09Å1.10Å
C6'H6sing1.09Å1.10Å
C6'H7sing1.09Å1.10Å
C8'H8sing1.09Å1.10Å
C8'H9sing1.09Å1.10Å
C8'H10sing1.09Å1.10Å
N2'H11sing0.97Å1.00Å
CBH12sing1.09Å1.10Å
CBH13sing1.09Å1.10Å
O3'H14sing0.97Å0.95Å
O4'H15sing0.97Å0.95Å
O6'H16sing0.97Å0.95Å
N3H17sing0.97Å1.00Å
C5H18sing1.08Å1.08Å
C6H19sing1.08Å1.08Å
C1DH20sing1.09Å1.10Å
C2DH21sing1.09Å1.10Å
O2'H22sing0.97Å0.95Å
C3DH23sing1.09Å1.10Å
C4DH24sing1.09Å1.10Å
O3DH25sing0.97Å0.95Å
C5DH26sing1.09Å1.10Å
C5DH27sing1.09Å1.10Å
O1AH28sing0.97Å0.95Å
O2BH29sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C4N3120.5°120.4°
O4C4C5118.9°120.3°
C4N3C2121.3°120.4°
N3C4C5120.6°119.3°
C4N3H17119.3°119.8°
N3C2O2120.1°119.6°
N3C2N1118.9°120.9°
C2N3H17119.3°119.8°
C4C5C6117.8°119.1°
C4C5H18121.1°120.4°
O2C2N1120.9°119.5°
C2N1C6121.5°120.6°
C2N1C1D120.7°119.7°
O2'C2DC1D128.6°111.1°
O2'C2DC3D118.7°111.1°
O2'C2DH2199.7°111.0°
C2DO2'H22109.5°114.0°
C5C6N1119.9°119.7°
C6C5H18121.1°120.5°
C5C6H19120.1°120.2°
C6N1C1D117.9°119.7°
N1C6H19120.1°120.1°
N1C1DC2D125.7°110.4°
N1C1DO4D119.7°110.3°
N1C1DH2097.2°110.3°
C1DC2DC3D104.2°101.0°
C2DC1DO4D109.3°105.1°
C2DC1DH2097.5°110.4°
C1DC2DH2199.6°111.1°
C2DC3DO3D119.9°110.9°
C2DC3DC4D103.3°102.3°
C3DC2DH2199.8°111.2°
C2DC3DH2399.3°110.8°
C1DO4DC4D108.8°110.0°
O4DC1DH2098.3°110.3°
O3DC3DC4D128.8°110.8°
O3DC3DH2399.3°110.7°
C3DO3DH25109.5°113.9°
C3DC4DO4D109.6°107.6°
C3DC4DC5D125.9°109.9°
C4DC3DH2399.2°111.0°
C3DC4DH2492.4°109.8°
O4DC4DC5D124.0°109.8°
O4DC4DH2492.6°109.9°
C4DC5DO5D103.1°109.5°
C5DC4DH2492.2°109.9°
C4DC5DH26111.1°109.5°
C4DC5DH27111.0°109.4°
C5DO5DPA110.1°123.0°
O5DC5DH26111.0°109.5°
O5DC5DH27111.0°109.5°
O5DPAO2A111.1°109.5°
O5DPAO1A110.9°109.5°
O5DPAO3A97.6°109.5°
O2APAO1A107.6°109.5°
O2APAO3A110.5°109.4°
O1APAO3A118.9°109.5°
PAO1AH28109.5°114.0°
PAO3APB124.5°134.0°
O3APBO1B107.3°109.4°
O3APBO2B114.4°109.5°
O3APBCB105.5°109.5°
O1BPBO2B101.5°109.4°
O1BPBCB114.9°109.5°
O2BPBCB113.3°109.5°
PBO2BH29109.5°114.0°
PBCBC1'126.5°109.5°
PBCBH12105.0°109.5°
PBCBH13105.0°109.5°
C5'C6'O6'108.7°109.5°
C6'C5'O5'111.0°109.5°
C6'C5'C4'111.7°109.5°
C6'C5'H5107.4°109.5°
C5'C6'H6109.7°109.4°
C5'C6'H7109.6°109.4°
O6'C6'H6109.7°109.5°
O6'C6'H7109.7°109.5°
C6'O6'H16109.5°114.0°
CBC1'O5'113.8°109.5°
CBC1'C2'106.9°109.5°
CBC1'H1109.8°109.5°
C1'CBH12105.1°109.5°
C1'CBH13105.1°109.5°
O5'C5'C4'112.5°109.4°
C5'O5'C1'113.1°114.1°
O5'C5'H5107.1°109.5°
C5'C4'C3'111.2°109.2°
C5'C4'O4'108.6°109.5°
C5'C4'H4108.0°109.5°
C4'C5'H5107.0°109.5°
O5'C1'C2'109.7°109.4°
O5'C1'H1108.5°109.5°
C1'C2'C3'109.4°109.2°
C1'C2'N2'107.2°109.5°
C2'C1'H1108.0°109.5°
C1'C2'H2109.0°109.5°
C3'C4'O4'111.6°109.6°
C4'C3'C2'114.7°109.1°
C4'C3'O3'110.9°109.5°
C4'C3'H3106.1°109.7°
C3'C4'H4108.1°109.5°
O4'C4'H4109.2°109.5°
C4'O4'H15109.5°114.1°
C2'C3'O3'111.6°109.6°
C3'C2'N2'113.1°109.6°
C3'C2'H2109.0°109.5°
C2'C3'H3106.0°109.5°
O3'C3'H3106.9°109.5°
C3'O3'H14109.5°114.0°
C2'N2'C7'123.5°120.0°
N2'C2'H2109.2°109.5°
C2'N2'H11118.3°120.0°
N2'C7'C8'117.1°120.0°
N2'C7'O7'123.0°120.0°
C7'N2'H11118.3°120.0°
C8'C7'O7'119.9°120.0°
C7'C8'H8109.5°109.4°
C7'C8'H9109.5°109.4°
C7'C8'H10109.5°109.5°
H6C6'H7109.5°109.5°
H8C8'H9109.5°109.5°
H8C8'H10109.5°109.5°
H9C8'H10109.5°109.5°
H12CBH13109.5°109.4°
H26C5DH27109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4N3C5179.6°180.0°
O4C4N3C2179.3°179.9°
O4C4C5C6179.7°180.0°
O4C4N3H170.8°0.0°
O4C4C5H180.3°0.0°
C4N3C2H17180.0°179.9°
C4N3C2O2179.4°179.9°
C4N3C2N10.1°0.1°
N3C4C5C60.0°0.0°
N3C4C5H18180.0°180.0°
C2N3C4C50.4°0.1°
N3C2O2N1179.4°180.0°
N3C2N1C60.6°0.0°
N3C2N1C1D179.8°179.7°
C4C5C6H18180.0°180.0°
C4C5C6N10.7°0.0°
C5C4N3H17179.6°180.0°
C4C5C6H19179.3°179.7°
O2C2N1C6179.9°180.0°
O2C2N1C1D0.7°0.3°
O2C2N3H170.7°0.0°
C2N1C6C51.0°0.0°
C2N1C6C1D179.2°179.8°
C2N1C1DC2D95.4°61.9°
C2N1C1DO4D113.0°53.8°
N1C2N3H17179.9°180.0°
C2N1C6H19179.0°179.8°
C2N1C1DH209.2°175.9°
O2'C2DC1DN157.5°86.7°
O2'C2DC1DC3D146.6°117.9°
O2'C2DC1DH21110.7°124.1°
O2'C2DC3DH21106.8°124.1°
O2'C2DC1DO4D148.5°154.4°
O2'C2DC3DO3D12.4°33.9°
O2'C2DC3DC4D164.1°152.1°
O2'C2DC1DH2047.0°35.5°
O2'C2DC3DH2394.0°89.6°
C5C6N1H19180.0°179.8°
C5C6N1C1D179.8°179.8°
C6N1C1DC2D85.3°117.8°
C6N1C1DO4D66.3°126.4°
N1C6C5H18179.3°180.0°
C6N1C1DH20170.1°4.3°
N1C1DC2DO4D154.0°119.0°
N1C1DC2DH20104.5°122.1°
N1C1DC2DC3D155.9°155.4°
N1C1DO4DH20103.2°122.1°
N1C1DO4DC4D143.9°143.4°
C1DN1C6H190.2°0.0°
N1C1DC2DH2153.2°37.4°
C1DC2DC3DH21102.6°118.0°
C2DC1DO4DH20101.0°119.0°
C1DC2DC3DO3D138.1°84.0°
C1DC2DC3DC4D13.5°34.1°
C2DC1DO4DC4D12.0°24.4°
C1DC2DO2'H22180.0°180.0°
C1DC2DC3DH23115.4°152.5°
C3DC2DC1DO4D1.9°36.4°
C2DC3DO3DC4D143.6°112.8°
C2DC3DO3DH23106.5°123.5°
C2DC3DC4DH23101.9°118.3°
C2DC3DC4DO4D21.8°21.4°
C2DC3DC4DC5D166.2°140.9°
C3DC2DC1DH2099.6°82.5°
C3DC2DO2'H2237.5°68.4°
C2DC3DC4DH2471.8°98.2°
C2DC3DO3DH25180.0°61.4°
C1DO4DC4DC3D21.5°1.7°
C1DO4DC4DC5D166.4°117.8°
O4DC1DC2DH21100.8°81.5°
C1DO4DC4DH2472.0°121.2°
O3DC3DC4DH23109.9°123.5°
O3DC3DC4DO4D126.3°96.9°
O3DC3DC4DC5D45.7°22.6°
O3DC3DC2DH21119.3°158.0°
O3DC3DC4DH24140.1°143.6°
C3DC4DO4DC5D172.2°119.5°
C3DC4DO4DH2493.4°119.5°
C3DC4DC5DH2494.5°120.9°
C3DC4DC5DO5D15.3°175.0°
C4DC3DC2DH2189.1°83.8°
C4DC3DO3DH2536.3°174.3°
C3DC4DC5DH26134.3°65.0°
C3DC4DC5DH27103.7°55.0°
O4DC4DC5DH2494.6°121.0°
O4DC4DC5DO5D173.8°66.9°
C4DO4DC1DH20112.9°94.6°
O4DC4DC3DH23123.8°139.6°
O4DC4DC5DH2654.8°53.2°
O4DC4DC5DH2767.2°173.1°
C4DC5DO5DH26119.0°120.0°
C4DC5DO5DH27119.0°120.0°
C4DC5DO5DPA161.7°180.0°
C5DC4DC3DH2364.2°100.9°
C4DC5DH26H27123.0°119.9°
C5DO5DPAO2A103.4°55.0°
C5DO5DPAO1A136.9°65.0°
C5DO5DPAO3A12.0°175.0°
O5DC5DC4DH2479.2°54.1°
O5DC5DH26H27122.9°120.0°
O5DPAO2AO1A121.6°120.0°
O5DPAO2AO3A107.1°120.0°
O5DPAO1AO3A111.8°120.0°
O5DPAO3APB166.3°160.0°
PAO5DC5DH2642.7°60.0°
PAO5DC5DH2779.4°60.0°
O5DPAO1AH28121.7°60.0°
O2APAO1AO3A126.4°120.0°
O2APAO3APB77.8°40.1°
O2APAO1AH280.0°180.0°
O1APAO3APB47.3°79.9°
PAO3APBO1B158.7°60.0°
PAO3APBO2B89.6°59.9°
PAO3APBCB35.7°179.9°
O3APAO1AH28126.4°60.0°
O3APBO1BO2B120.3°120.0°
O3APBO1BCB117.0°120.0°
O3APBO2BCB121.1°120.0°
O3APBCBC1'137.4°175.0°
O3APBCBH1215.1°65.0°
O3APBCBH13100.3°55.0°
O3APBO2BH29115.1°60.0°
O1BPBO2BCB123.8°120.0°
O1BPBCBC1'19.4°55.0°
O1BPBCBH12102.8°175.0°
O1BPBCBH13141.7°65.0°
O1BPBO2BH290.0°180.0°
O2BPBCBC1'96.6°65.0°
O2BPBCBH12141.1°55.1°
O2BPBCBH1325.7°175.0°
PBCBC1'H12122.3°120.0°
PBCBC1'H13122.3°120.0°
PBCBC1'O5'112.5°65.1°
PBCBC1'C2'126.2°175.0°
PBCBC1'H19.3°55.0°
PBCBH12H13112.3°120.0°
CBPBO2BH29123.8°60.0°
C5'C6'O6'H6119.9°120.0°
C5'C6'O6'H7119.9°120.0°
C6'C5'O5'C4'125.9°120.0°
C6'C5'O5'H5116.9°120.0°
C6'C5'C4'H5117.2°120.0°
C6'C5'O5'C1'179.7°178.9°
C6'C5'C4'C3'172.8°177.6°
C6'C5'C4'O4'49.6°57.7°
C6'C5'C4'H468.7°62.4°
C5'C6'H6H7120.3°120.0°
C5'C6'O6'H16180.0°180.0°
O6'C6'C5'O5'38.7°65.0°
O6'C6'C5'C4'87.6°175.1°
O6'C6'C5'H5155.4°55.0°
O6'C6'H6H7120.4°120.1°
CBC1'O5'C5'60.8°58.9°
CBC1'O5'C2'119.6°120.0°
CBC1'O5'H1122.5°120.0°
CBC1'C2'H1118.1°120.0°
CBC1'C2'C3'66.0°62.4°
CBC1'C2'N2'56.9°57.6°
CBC1'C2'H2174.9°177.7°
C1'CBH12H13112.4°120.0°
O5'C5'C4'H5117.3°120.0°
C5'O5'C1'C2'58.9°61.1°
O5'C5'C4'C3'47.3°57.6°
O5'C5'C4'O4'75.9°62.3°
C5'O5'C1'H1176.7°178.8°
O5'C5'C4'H4165.8°177.6°
O5'C5'C6'H681.1°175.0°
O5'C5'C6'H7158.6°55.0°
C4'C5'O5'C1'53.8°61.1°
C5'C4'C3'O4'121.5°119.9°
C5'C4'C3'H4118.4°119.9°
C5'C4'O4'H4117.6°120.1°
C5'C4'C3'C2'49.5°57.0°
C5'C4'C3'O3'177.0°176.9°
C5'C4'C3'H367.2°62.9°
C4'C5'C6'H6152.6°55.1°
C4'C5'C6'H732.3°64.9°
C5'C4'O4'H15180.0°60.3°
O5'C1'C2'H1118.1°120.0°
O5'C1'C2'C3'57.8°57.6°
O5'C1'C2'N2'179.3°177.5°
O5'C1'C2'H261.3°62.4°
C1'O5'C5'H563.4°58.9°
O5'C1'CBH129.7°174.9°
O5'C1'CBH13125.2°55.0°
C1'C2'C3'C4'54.8°57.0°
C1'C2'C3'N2'119.3°119.9°
C1'C2'C3'H2119.0°119.9°
C1'C2'C3'O3'177.9°176.8°
C1'C2'N2'H2117.9°120.1°
C1'C2'N2'C7'133.6°155.0°
C1'C2'C3'H361.9°63.0°
C1'C2'N2'H1146.4°25.1°
C2'C1'CBH12111.5°55.0°
C2'C1'CBH133.9°65.0°
C3'C4'O4'H4119.5°120.2°
C4'C3'C2'O3'127.2°119.9°
C4'C3'C2'H3116.7°120.0°
C4'C3'O3'H3115.3°120.3°
C4'C3'C2'N2'174.2°176.9°
C4'C3'C2'H264.2°62.9°
C3'C4'C5'H570.0°62.4°
C4'C3'O3'H14180.0°60.5°
C3'C4'O4'H1557.1°180.0°
O4'C4'C3'C2'72.0°62.9°
O4'C4'C3'O3'55.6°57.0°
O4'C4'C3'H3171.3°177.2°
O4'C4'C5'H5166.9°177.7°
C2'C3'O3'H3115.5°120.1°
C3'C2'N2'H2121.5°120.2°
C3'C2'N2'C7'105.8°85.3°
C3'C2'C1'H1175.9°177.6°
C2'C3'C4'H4167.9°176.9°
C3'C2'N2'H1174.2°94.6°
C2'C3'O3'H1450.8°180.0°
O3'C3'C2'N2'58.6°63.2°
O3'C3'C2'H263.0°56.9°
O3'C3'C4'H464.6°63.2°
C2'N2'C7'H11180.0°179.9°
C2'N2'C7'C8'179.9°180.0°
C2'N2'C7'O7'0.5°0.0°
N2'C2'C1'H161.2°62.5°
N2'C2'C3'H357.5°56.9°
N2'C7'C8'O7'179.4°180.0°
C7'N2'C2'H215.7°34.9°
N2'C7'C8'H8179.4°90.0°
N2'C7'C8'H959.4°30.0°
N2'C7'C8'H1060.6°150.0°
C7'C8'H8H9120.0°119.9°
C7'C8'H8H10120.0°120.0°
C7'C8'H9H10120.0°120.0°
C8'C7'N2'H110.1°0.1°
O7'C7'C8'H80.0°90.0°
O7'C7'C8'H9120.0°150.0°
O7'C7'C8'H10120.0°30.0°
O7'C7'N2'H11179.5°180.0°
H1C1'C2'H256.8°57.7°
H1C1'CBH12131.5°65.1°
H1C1'CBH13113.0°175.0°
H2C2'C3'H3179.1°177.1°
H2C2'N2'H11164.3°145.2°
H3C3'C4'H451.2°57.0°
H3C3'O3'H1464.7°59.8°
H4C4'C5'H548.5°57.6°
H4C4'O4'H1562.4°59.8°
H5C5'C6'H635.6°65.0°
H5C5'C6'H784.7°175.0°
H6C6'O6'H1660.2°60.0°
H7C6'O6'H1660.1°60.1°
H8C8'H9H10120.0°120.1°
H18C5C6H190.7°0.3°
H20C1DC2DH21157.7°159.5°
H21C2DO2'H2269.3°55.8°
H21C2DC3DH2312.8°34.6°
H23C3DC4DH2430.2°20.1°
H23C3DO3DH2573.6°62.1°
H24C4DC5DH2639.8°174.2°
H24C4DC5DH27161.8°65.9°

222624

PDB entries from 2024-07-17

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