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UDM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1'C2'sing1.53Å1.55Å
C1'CBsing1.53Å1.53Å
C1'O5'sing1.43Å1.46Å
C1'H1'sing1.09Å1.10Å
C2'C3'sing1.53Å1.53Å
C2'N2'sing1.47Å1.48Å
C2'H2'sing1.09Å1.10Å
C3'C4'sing1.53Å1.55Å
C3'O3'sing1.43Å1.44Å
C3'H3'sing1.09Å1.10Å
C4'C5'sing1.53Å1.54Å
C4'O4'sing1.43Å1.44Å
C4'H4'sing1.09Å1.10Å
C5'C6'sing1.53Å1.54Å
C5'O5'sing1.43Å1.45Å
C5'H5'sing1.09Å1.10Å
C6'O6'sing1.43Å1.45Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
C7'C8'sing1.51Å1.50Å
C7'N2'sing1.35Å1.35Å
C7'O7'doub1.21Å1.23Å
C8'H8'1sing1.09Å1.10Å
C8'H8'2sing1.09Å1.10Å
C8'H8'3sing1.09Å1.10Å
N2'H3sing0.97Å1.00Å
CBPBsing1.82Å1.78Å
CBHB1sing1.09Å1.10Å
CBHB2sing1.09Å1.10Å
O3'H4sing0.97Å0.95Å
O4'H7sing0.97Å0.95Å
O6'H6'sing0.97Å0.95Å
N1C2sing1.35Å1.41Å
N1C6sing1.37Å1.39Å
N1C1Dsing1.46Å1.48Å
C2N3sing1.35Å1.37Å
C2O2doub1.22Å1.22Å
N3C4sing1.35Å1.42Å
N3HN3sing0.97Å1.00Å
C4C5sing1.42Å1.44Å
C4O4doub1.22Å1.22Å
C5C6doub1.35Å1.31Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C1DC2Dsing1.55Å1.51Å
C1DO4Dsing1.44Å1.42Å
C1DH1Dsing1.09Å1.10Å
C2DO2'sing1.43Å1.43Å
C2DC3Dsing1.55Å1.54Å
C2DH2Dsing1.09Å1.10Å
O2'H1sing0.97Å0.95Å
C3DC4Dsing1.54Å1.53Å
C3DO3Dsing1.43Å1.45Å
C3DH3Dsing1.09Å1.10Å
C4DO4Dsing1.44Å1.46Å
C4DC5Dsing1.53Å1.53Å
C4DH4Dsing1.09Å1.10Å
O3DH2sing0.97Å0.95Å
C5DO5Dsing1.43Å1.43Å
C5DH5'1sing1.09Å1.10Å
C5DH5'2sing1.09Å1.10Å
O5DPAsing1.61Å1.58Å
PAO1Adoub1.48Å1.49Å
PAO2Asing1.61Å1.47Å
PAO3Asing1.61Å1.64Å
O2AH2Asing0.97Å0.95Å
O3APBsing1.61Å1.58Å
PBO1Bdoub1.48Å1.50Å
PBO2Bsing1.61Å1.50Å
O2BH2Bsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2'C1'CB119.5°109.3°
C2'C1'O5'105.9°109.8°
C2'C1'H1'104.5°109.6°
C1'C2'C3'105.4°109.1°
C1'C2'N2'110.4°109.6°
C1'C2'H2'111.5°109.6°
CBC1'O5'107.3°109.4°
CBC1'H1'103.0°109.4°
C1'CBPB124.6°109.5°
C1'CBHB1101.1°109.5°
C1'CBHB2104.7°109.5°
O5'C1'H1'117.4°109.4°
C1'O5'C5'114.0°107.7°
C3'C2'N2'109.4°109.5°
C3'C2'H2'112.4°109.5°
C2'C3'C4'110.0°108.6°
C2'C3'O3'110.8°109.6°
C2'C3'H3'107.8°109.6°
N2'C2'H2'107.7°109.5°
C2'N2'C7'120.0°120.0°
C2'N2'H3120.1°120.0°
C4'C3'O3'108.1°109.7°
C4'C3'H3'110.5°109.7°
C3'C4'C5'111.6°109.0°
C3'C4'O4'114.5°109.5°
C3'C4'H4'103.7°109.6°
O3'C3'H3'109.7°109.6°
C3'O3'H4109.5°106.8°
C5'C4'O4'107.1°109.6°
C5'C4'H4'111.5°109.6°
C4'C5'C6'108.7°109.4°
C4'C5'O5'109.1°109.8°
C4'C5'H5'108.6°109.5°
O4'C4'H4'108.5°109.5°
C4'O4'H7109.5°106.7°
C6'C5'O5'104.0°109.3°
C6'C5'H5'113.4°109.4°
C5'C6'O6'111.2°109.5°
C5'C6'H6'1108.5°109.5°
C5'C6'H6'2108.9°109.5°
O5'C5'H5'112.9°109.4°
O6'C6'H6'1108.5°109.4°
O6'C6'H6'2108.9°109.4°
C6'O6'H6'109.5°106.9°
H6'1C6'H6'2110.8°109.4°
C8'C7'N2'117.8°120.0°
C8'C7'O7'119.0°120.0°
C7'C8'H8'1109.4°109.4°
C7'C8'H8'2109.5°109.5°
C7'C8'H8'3109.5°109.5°
N2'C7'O7'123.1°120.0°
C7'N2'H3120.0°120.0°
H8'1C8'H8'2109.5°109.4°
H8'1C8'H8'3109.4°109.5°
H8'2C8'H8'3109.5°109.5°
PBCBHB1101.1°109.5°
PBCBHB2104.7°109.5°
CBPBO3A112.1°109.5°
CBPBO1B114.6°109.5°
CBPBO2B109.7°109.5°
HB1CBHB2122.3°109.4°
C2N1C6123.0°120.6°
C2N1C1D117.5°119.7°
N1C2N3113.7°120.9°
N1C2O2123.9°119.6°
C6N1C1D119.5°119.7°
N1C6C5121.8°119.7°
N1C6H6119.1°120.1°
N1C1DC2D117.8°110.8°
N1C1DO4D110.0°110.6°
N1C1DH1D102.2°110.5°
N3C2O2122.4°119.5°
C2N3C4125.7°120.3°
C2N3HN3117.1°119.9°
C4N3HN3117.1°119.8°
N3C4C5115.8°119.4°
N3C4O4118.2°120.4°
C5C4O4126.0°120.3°
C4C5C6120.0°119.1°
C4C5H5120.0°120.5°
C6C5H5120.0°120.4°
C5C6H6119.1°120.2°
C2DC1DO4D106.3°103.5°
C2DC1DH1D106.2°110.6°
C1DC2DO2'110.5°110.9°
C1DC2DC3D102.3°102.1°
C1DC2DH2D114.7°110.9°
O4DC1DH1D114.6°110.6°
C1DO4DC4D109.9°107.0°
O2'C2DC3D113.1°110.8°
O2'C2DH2D104.4°110.8°
C2DO2'H1109.5°106.7°
C3DC2DH2D112.2°111.0°
C2DC3DC4D103.8°104.0°
C2DC3DO3D112.0°110.5°
C2DC3DH3D111.8°110.5°
C4DC3DO3D110.0°110.8°
C4DC3DH3D113.7°110.4°
C3DC4DO4D106.1°107.4°
C3DC4DC5D118.2°109.9°
C3DC4DH4D105.6°109.8°
O3DC3DH3D105.7°110.5°
C3DO3DH2109.5°106.8°
O4DC4DC5D108.5°109.9°
O4DC4DH4D115.8°109.9°
C5DC4DH4D103.1°109.9°
C4DC5DO5D108.8°109.5°
C4DC5DH5'1109.8°109.5°
C4DC5DH5'2109.7°109.4°
O5DC5DH5'1109.8°109.5°
O5DC5DH5'2109.7°109.5°
C5DO5DPA122.8°106.8°
H5'1C5DH5'2109.0°109.4°
O5DPAO1A110.5°109.5°
O5DPAO2A105.3°109.5°
O5DPAO3A110.5°109.5°
O1APAO2A116.7°109.4°
O1APAO3A107.5°109.5°
O2APAO3A106.2°109.5°
PAO2AH2A109.5°106.8°
PAO3APB136.7°106.8°
O3APBO1B103.3°109.5°
O3APBO2B105.0°109.5°
O1BPBO2B111.6°109.5°
PBO2BH2B109.5°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2'C1'CBO5'120.4°120.2°
C2'C1'CBH1'115.2°120.0°
C2'C1'O5'H1'116.1°120.3°
C1'C2'C3'N2'118.8°119.9°
C1'C2'C3'H2'121.7°120.0°
C1'C2'N2'H2'121.9°120.2°
C1'C2'C3'C4'61.3°53.7°
C1'C2'C3'O3'179.2°173.6°
C1'C2'C3'H3'59.2°66.1°
C2'C1'O5'C5'68.4°67.4°
C1'C2'N2'C7'116.6°155.2°
C1'C2'N2'H363.3°24.9°
C2'C1'CBPB65.3°176.5°
C2'C1'CBHB1177.3°56.5°
C2'C1'CBHB254.7°63.4°
CBC1'O5'H1'115.2°119.8°
CBC1'C2'C3'54.4°58.9°
CBC1'C2'N2'63.7°61.1°
CBC1'C2'H2'176.7°178.8°
CBC1'O5'C5'60.3°52.5°
C1'CBPBHB1112.0°120.0°
C1'CBPBHB2120.0°120.0°
C1'CBHB1HB2115.5°120.0°
C1'CBPBO3A172.8°175.0°
C1'CBPBO1B55.5°55.0°
C1'CBPBO2B71.0°65.0°
O5'C1'C2'C3'66.7°61.1°
O5'C1'C2'N2'175.3°179.0°
O5'C1'C2'H2'55.6°58.8°
C1'O5'C5'C4'58.8°67.5°
C1'O5'C5'C6'174.6°172.4°
C1'O5'C5'H5'62.1°52.6°
O5'C1'CBPB174.4°63.3°
O5'C1'CBHB162.3°176.7°
O5'C1'CBHB265.7°56.8°
H1'C1'C2'C3'168.8°178.7°
H1'C1'C2'N2'50.7°58.8°
H1'C1'C2'H2'68.9°61.3°
H1'C1'O5'C5'175.5°172.3°
H1'C1'CBPB49.9°56.5°
H1'C1'CBHB162.1°63.5°
H1'C1'CBHB2169.9°176.6°
C3'C2'N2'H2'122.5°120.1°
C2'C3'C4'O3'121.1°119.8°
C2'C3'C4'H3'118.9°119.7°
C2'C3'O3'H3'118.9°120.3°
C2'C3'C4'C5'53.8°53.7°
C2'C3'C4'O4'175.7°173.7°
C2'C3'C4'H4'66.4°66.2°
C3'C2'N2'C7'127.7°85.2°
C3'C2'N2'H352.3°94.8°
C2'C3'O3'H4132.0°180.0°
N2'C2'C3'C4'179.9°173.6°
N2'C2'C3'O3'60.4°66.5°
N2'C2'C3'H3'59.6°53.8°
C2'N2'C7'C8'179.7°180.0°
C2'N2'C7'H3180.0°179.9°
C2'N2'C7'O7'0.6°0.0°
H2'C2'C3'C4'60.3°66.3°
H2'C2'C3'O3'59.1°53.6°
H2'C2'C3'H3'179.1°173.9°
H2'C2'N2'C7'5.2°35.0°
H2'C2'N2'H3174.8°145.1°
C4'C3'O3'H3'120.6°120.5°
C3'C4'C5'O4'126.1°119.8°
C3'C4'C5'H4'115.4°119.9°
C3'C4'O4'H4'115.2°120.2°
C3'C4'C5'C6'162.2°178.7°
C3'C4'C5'O5'49.4°61.3°
C3'C4'C5'H5'74.1°58.8°
C4'C3'O3'H4107.5°60.8°
C3'C4'O4'H7124.2°180.0°
O3'C3'C4'C5'174.9°173.5°
O3'C3'C4'O4'63.2°66.6°
O3'C3'C4'H4'54.8°53.6°
H3'C3'C4'C5'65.1°66.0°
H3'C3'C4'O4'56.8°53.9°
H3'C3'C4'H4'174.8°174.1°
H3'C3'O3'H413.1°59.7°
C5'C4'O4'H4'120.5°120.3°
C4'C5'C6'O5'116.1°120.3°
C4'C5'C6'H5'120.8°119.9°
C4'C5'O5'H5'120.9°120.2°
C4'C5'C6'O6'177.5°175.0°
C4'C5'C6'H6'158.2°55.0°
C4'C5'C6'H6'262.5°65.0°
C5'C4'O4'H7111.5°60.5°
O4'C4'C5'C6'71.8°58.8°
O4'C4'C5'O5'175.4°178.8°
O4'C4'C5'H5'52.0°61.0°
H4'C4'C5'C6'46.7°61.4°
H4'C4'C5'O5'66.1°58.6°
H4'C4'C5'H5'170.5°178.8°
H4'C4'O4'H79.0°59.8°
C6'C5'O5'H5'123.3°119.8°
C5'C6'O6'H6'1119.3°120.0°
C5'C6'O6'H6'2120.0°120.0°
C5'C6'H6'1H6'2119.5°120.0°
C5'C6'O6'H6'120.4°180.0°
O5'C5'C6'O6'61.3°64.7°
O5'C5'C6'H6'157.9°175.3°
O5'C5'C6'H6'2178.7°55.3°
H5'C5'C6'O6'61.7°55.1°
H5'C5'C6'H6'1179.0°64.9°
H5'C5'C6'H6'258.3°175.1°
O6'C6'H6'1H6'2119.6°119.9°
H6'1C6'O6'H6'1.1°60.0°
H6'2C6'O6'H6'119.7°59.9°
C8'C7'N2'O7'179.7°180.0°
C7'C8'H8'1H8'2120.0°120.0°
C7'C8'H8'1H8'3120.0°120.0°
C7'C8'H8'2H8'3120.1°120.0°
C8'C7'N2'H30.3°0.0°
N2'C7'C8'H8'1123.5°180.0°
N2'C7'C8'H8'2116.5°60.0°
N2'C7'C8'H8'33.5°60.0°
O7'C7'C8'H8'156.2°0.0°
O7'C7'C8'H8'263.8°119.9°
O7'C7'C8'H8'3176.2°120.0°
O7'C7'N2'H3179.4°179.9°
H8'1C8'H8'2H8'3120.0°120.0°
PBCBHB1HB2115.5°120.0°
CBPBO3APA86.5°180.0°
CBPBO3AO1B123.9°120.0°
CBPBO3AO2B119.1°120.0°
CBPBO1BO2B125.5°120.0°
CBPBO2BH2B133.8°60.0°
HB1CBPBO3A75.2°55.0°
HB1CBPBO1B167.5°65.0°
HB1CBPBO2B41.0°175.0°
HB2CBPBO3A52.8°65.0°
HB2CBPBO1B64.5°175.0°
HB2CBPBO2B169.0°55.0°
C2N1C6C1D179.8°179.7°
N1C2N3O2180.0°179.5°
N1C2N3C40.2°0.5°
N1C2N3HN3179.7°179.7°
C2N1C6C50.2°0.3°
C2N1C6H6179.8°179.7°
C2N1C1DC2D132.1°60.9°
C2N1C1DO4D106.0°53.3°
C2N1C1DH1D16.2°176.1°
C6N1C2N30.4°0.6°
C6N1C2O2179.6°180.0°
N1C6C5C40.2°0.0°
N1C6C5H6180.0°180.0°
N1C6C5H5179.8°179.9°
C6N1C1DC2D47.8°119.4°
C6N1C1DO4D74.2°126.4°
C6N1C1DH1D163.7°3.6°
C1DN1C2N3179.4°179.8°
C1DN1C2O20.5°0.3°
C1DN1C6C5179.6°180.0°
C1DN1C6H60.4°0.1°
N1C1DC2DO4D123.8°118.6°
N1C1DC2DH1D113.7°122.9°
N1C1DO4DH1D114.5°122.8°
N1C1DC2DO2'81.7°86.2°
N1C1DC2DC3D157.6°155.7°
N1C1DC2DH2D35.9°37.4°
N1C1DO4DC4D152.4°158.7°
C2N3C4HN3180.0°179.8°
C2N3C4C50.1°0.2°
C2N3C4O4179.9°179.8°
O2C2N3C4179.8°180.0°
O2C2N3HN30.2°0.2°
N3C4C5O4180.0°180.0°
N3C4C5C60.3°0.0°
N3C4C5H5179.6°180.0°
HN3N3C4C5179.9°179.9°
HN3N3C4O40.1°0.1°
C4C5C6H5180.0°179.9°
C4C5C6H6179.8°180.0°
O4C4C5C6179.7°180.0°
O4C4C5H50.3°0.1°
H5C5C6H60.2°0.0°
C2DC1DO4DH1D117.0°118.5°
C1DC2DO2'C3D114.0°112.7°
C1DC2DO2'H2D123.8°123.6°
C1DC2DC3DH2D123.5°118.3°
C1DC2DO2'H164.3°180.0°
C1DC2DC3DC4D30.8°21.0°
C1DC2DC3DO3D87.9°97.9°
C1DC2DC3DH3D153.7°139.5°
C2DC1DO4DC4D23.9°40.0°
O4DC1DC2DO2'154.5°155.2°
O4DC1DC2DC3D33.8°37.1°
O4DC1DC2DH2D87.9°81.2°
C1DO4DC4DC3D3.5°26.4°
C1DO4DC4DC5D131.4°145.9°
C1DO4DC4DH4D113.3°93.0°
H1DC1DC2DO2'32.0°36.8°
H1DC1DC2DC3D88.7°81.4°
H1DC1DC2DH2D149.6°160.3°
H1DC1DO4DC4D93.1°78.4°
O2'C2DC3DH2D117.7°123.6°
O2'C2DC3DC4D149.6°139.2°
O2'C2DC3DO3D31.0°20.2°
O2'C2DC3DH3D87.5°102.3°
C3DC2DO2'H1178.3°67.3°
C2DC3DC4DO3D120.0°118.8°
C2DC3DC4DH3D121.6°118.5°
C2DC3DO3DH3D122.0°122.6°
C2DC3DC4DO4D17.5°1.8°
C2DC3DC4DC5D104.4°121.4°
C2DC3DC4DH4D141.0°117.6°
C2DC3DO3DH224.4°61.5°
H2DC2DO2'H159.5°56.4°
H2DC2DC3DC4D92.7°97.2°
H2DC2DC3DO3D148.7°143.8°
H2DC2DC3DH3D30.2°21.2°
C4DC3DO3DH3D123.1°122.7°
C3DC4DO4DC5D127.9°119.5°
C3DC4DO4DH4D116.8°119.4°
C3DC4DC5DH4D116.0°121.0°
C4DC3DO3DH2139.3°176.2°
C3DC4DC5DO5D58.7°175.3°
C3DC4DC5DH5'161.6°64.7°
C3DC4DC5DH5'2178.7°55.2°
O3DC3DC4DO4D102.5°120.6°
O3DC3DC4DC5D135.6°119.8°
O3DC3DC4DH4D21.0°1.2°
H3DC3DC4DO4D139.2°116.7°
H3DC3DC4DC5D17.3°2.9°
H3DC3DC4DH4D97.4°123.9°
H3DC3DO3DH297.6°61.1°
O4DC4DC5DH4D123.3°121.0°
O4DC4DC5DO5D62.0°66.7°
O4DC4DC5DH5'1177.8°53.3°
O4DC4DC5DH5'258.0°173.3°
C4DC5DO5DH5'1120.3°120.0°
C4DC5DO5DH5'2120.0°120.0°
C4DC5DH5'1H5'2120.2°119.9°
C4DC5DO5DPA127.8°180.0°
H4DC4DC5DO5D174.7°54.3°
H4DC4DC5DH5'154.4°174.4°
H4DC4DC5DH5'265.3°65.7°
O5DC5DH5'1H5'2120.2°120.0°
C5DO5DPAO1A37.0°55.0°
C5DO5DPAO2A163.9°65.0°
C5DO5DPAO3A81.8°175.0°
H5'1C5DO5DPA7.6°60.0°
H5'2C5DO5DPA112.2°60.0°
O5DPAO1AO2A120.3°120.0°
O5DPAO1AO3A120.7°120.0°
O5DPAO2AO3A117.3°120.0°
O5DPAO2AH2A81.8°60.0°
O5DPAO3APB76.6°165.0°
O1APAO2AO3A119.7°120.0°
O1APAO2AH2A155.2°180.0°
O1APAO3APB44.0°45.0°
O2APAO3APB169.6°75.0°
O3APAO2AH2A35.4°60.0°
PAO3APBO1B37.3°60.0°
PAO3APBO2B154.4°60.0°
O3APBO1BO2B112.3°120.0°
O3APBO2BH2B13.1°60.0°
O1BPBO2BH2B98.1°180.0°

224931

PDB entries from 2024-09-11

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