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UD6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N1sing1.35Å1.41Å
N1C6sing1.37Å1.42Å
N1C1Bsing1.46Å1.49Å
N3C2sing1.35Å1.40Å
O2C2doub1.22Å1.23Å
N3C4sing1.35Å1.40Å
O4C4doub1.22Å1.23Å
C4C5sing1.42Å1.39Å
C5C6doub1.35Å1.39Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
O2APAdoub1.48Å1.48Å
O5BPAsing1.61Å1.60Å
PAO1Asing1.61Å1.48Å
PAO3Asing1.61Å1.62Å
O3APBsing1.61Å1.64Å
O1BPBdoub1.48Å1.48Å
PBO1'sing1.61Å1.57Å
PBO2Bsing1.61Å1.48Å
O1'C1'sing1.43Å1.41Å
C1'O5'sing1.43Å1.45Å
C1'C2'sing1.53Å1.53Å
C1'H1'sing1.09Å1.10Å
O1AHO1Asing0.97Å0.95Å
O4BC1Bsing1.44Å1.43Å
C1BC2Bsing1.55Å1.53Å
C1BH1Bsing1.09Å1.10Å
C3'C2'sing1.53Å1.52Å
C9'C2'sing1.53Å1.54Å
C2'H2'sing1.09Å1.10Å
C2BO2'sing1.43Å1.43Å
O2'HO2'sing0.97Å0.95Å
C2BC3Bsing1.55Å1.53Å
C2BH2Bsing1.09Å1.10Å
O2BHO2Bsing0.97Å0.95Å
C3'C4'sing1.53Å1.54Å
C3'O3'sing1.43Å1.42Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4BC3Bsing1.54Å1.54Å
O3BC3Bsing1.43Å1.44Å
C3BH3Bsing1.09Å1.10Å
O3BHO3Bsing0.97Å0.95Å
C5'C4'sing1.53Å1.55Å
C4'O4'sing1.43Å1.43Å
C4'H4'sing1.09Å1.10Å
O4'HO4'sing0.97Å0.95Å
O4BC4Bsing1.44Å1.44Å
C4BC5Bsing1.53Å1.52Å
C4BH4Bsing1.09Å1.10Å
C5'C6'sing1.53Å1.55Å
C5'O5'sing1.43Å1.45Å
C5'H5'sing1.09Å1.10Å
C5BO5Bsing1.43Å1.41Å
C5BH5Bsing1.09Å1.10Å
C5BH5BAsing1.09Å1.10Å
C6'O6'sing1.43Å1.43Å
C6'H6'sing1.09Å1.10Å
C6'H6'Asing1.09Å1.10Å
O6'HO6'sing0.97Å0.95Å
C8'C7'sing1.51Å1.53Å
C9'C7'sing1.51Å1.40Å
C7'O7'doub1.21Å1.23Å
C8'H8'sing1.09Å1.10Å
C8'H8'Asing1.09Å1.10Å
C8'H8'Bsing1.09Å1.10Å
C9'H9'sing1.09Å1.10Å
C9'H9'Asing1.09Å1.10Å
N3HN3sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6119.9°120.6°
C2N1C1B119.5°119.7°
N1C2N3118.9°121.0°
N1C2O2120.8°119.5°
C6N1C1B120.6°119.7°
N1C6C5120.5°119.7°
N1C6H6119.7°120.2°
N1C1BO4B106.8°110.7°
N1C1BC2B113.3°110.6°
N1C1BH1B107.1°110.5°
N3C2O2120.3°119.5°
C2N3C4120.5°120.2°
C2N3HN3119.7°119.9°
N3C4O4119.7°120.3°
N3C4C5120.7°119.4°
C4N3HN3119.8°119.9°
O4C4C5119.7°120.3°
C4C5C6119.5°119.1°
C4C5H5120.2°120.4°
C6C5H5120.3°120.4°
C5C6H6119.7°120.2°
O2APAO5B110.5°109.5°
O2APAO1A119.2°109.5°
O2APAO3A107.9°109.5°
O5BPAO1A106.5°109.5°
O5BPAO3A103.4°109.4°
PAO5BC5B121.4°123.0°
O1APAO3A108.1°109.5°
PAO1AHO1A109.5°114.0°
PAO3APB128.4°134.0°
O3APBO1B114.7°109.5°
O3APBO1'96.6°109.5°
O3APBO2B107.1°109.5°
O1BPBO1'106.3°109.5°
O1BPBO2B119.7°109.5°
O1'PBO2B110.0°109.5°
PBO1'C1'118.4°123.0°
PBO2BHO2B109.5°114.0°
O1'C1'O5'104.9°109.5°
O1'C1'C2'107.8°109.5°
O1'C1'H1'115.3°109.5°
O5'C1'C2'114.5°109.4°
O5'C1'H1'108.8°109.5°
C1'O5'C5'111.9°114.1°
C2'C1'H1'105.9°109.5°
C1'C2'C3'108.0°109.2°
C1'C2'C9'111.9°109.5°
C1'C2'H2'108.9°109.5°
O4BC1BC2B104.0°103.5°
O4BC1BH1B115.9°110.7°
C1BO4BC4B107.2°107.0°
C2BC1BH1B109.8°110.6°
C1BC2BO2'109.0°110.9°
C1BC2BC3B101.9°102.1°
C1BC2BH2B115.0°110.9°
C3'C2'C9'109.7°109.6°
C3'C2'H2'111.1°109.5°
C2'C3'C4'110.7°109.0°
C2'C3'O3'109.2°109.5°
C2'C3'H3'109.1°109.5°
C9'C2'H2'107.3°109.5°
C2'C9'C7'123.2°109.5°
C2'C9'H9'105.1°109.5°
C2'C9'H9'A105.1°109.4°
C2BO2'HO2'109.5°114.0°
O2'C2BC3B110.6°110.9°
O2'C2BH2B106.9°110.8°
C3BC2BH2B113.4°110.9°
C2BC3BC4B103.9°104.2°
C2BC3BO3B110.0°110.5°
C2BC3BH3B112.5°110.4°
C4'C3'O3'110.2°109.6°
C4'C3'H3'108.1°109.6°
C3'C4'C5'112.4°109.2°
C3'C4'O4'109.7°109.5°
C3'C4'H4'108.0°109.5°
O3'C3'H3'109.6°109.6°
C3'O3'HO3'109.5°114.0°
C4BC3BO3B108.8°110.6°
C4BC3BH3B113.6°110.5°
C3BC4BO4B107.1°107.4°
C3BC4BC5B113.7°109.8°
C3BC4BH4B106.6°109.8°
O3BC3BH3B108.0°110.5°
C3BO3BHO3B109.5°114.0°
C5'C4'O4'111.3°109.5°
C5'C4'H4'106.2°109.5°
C4'C5'C6'118.6°109.5°
C4'C5'O5'107.1°109.4°
C4'C5'H5'104.2°109.5°
O4'C4'H4'109.1°109.5°
C4'O4'HO4'109.5°114.0°
O4BC4BC5B103.8°109.9°
O4BC4BH4B116.1°110.0°
C5BC4BH4B109.8°109.9°
C4BC5BO5B109.8°109.4°
C4BC5BH5B109.4°109.5°
C4BC5BH5BA109.3°109.5°
C6'C5'O5'107.6°109.5°
C6'C5'H5'103.7°109.5°
C5'C6'O6'111.5°109.5°
C5'C6'H6'108.8°109.5°
C5'C6'H6'A108.8°109.5°
O5'C5'H5'116.0°109.5°
O5BC5BH5B109.4°109.4°
O5BC5BH5BA109.4°109.4°
H5BC5BH5BA109.6°109.6°
O6'C6'H6'108.8°109.5°
O6'C6'H6'A108.8°109.4°
C6'O6'HO6'109.5°114.0°
H6'C6'H6'A110.2°109.5°
C8'C7'C9'119.1°120.0°
C8'C7'O7'119.9°120.0°
C7'C8'H8'109.5°109.5°
C7'C8'H8'A109.5°109.4°
C7'C8'H8'B109.5°109.5°
C9'C7'O7'121.0°120.0°
C7'C9'H9'105.1°109.5°
C7'C9'H9'A105.1°109.5°
H8'C8'H8'A109.4°109.5°
H8'C8'H8'B109.5°109.5°
H8'AC8'H8'B109.5°109.5°
H9'C9'H9'A113.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1B179.3°179.8°
N1C2N3O2179.6°180.0°
N1C2N3C40.3°0.0°
C2N1C6C50.8°0.0°
C2N1C6H6179.2°179.8°
C2N1C1BO4B117.7°49.3°
C2N1C1BC2B128.3°64.8°
C2N1C1BH1B7.1°172.4°
N1C2N3HN3179.6°179.9°
C6N1C2N30.6°0.0°
C6N1C2O2179.8°180.0°
N1C6C5C40.7°0.0°
N1C6C5H6180.0°179.7°
N1C6C5H5179.3°180.0°
C6N1C1BO4B61.6°130.9°
C6N1C1BC2B52.4°115.0°
C6N1C1BH1B173.5°7.9°
C1BN1C2N3179.9°179.7°
C1BN1C2O20.5°0.2°
C1BN1C6C5179.9°179.7°
C1BN1C6H60.1°0.0°
N1C1BO4BC2B120.1°118.5°
N1C1BO4BH1B119.3°122.9°
N1C1BC2BH1B119.7°122.8°
N1C1BC2BO2'88.2°86.2°
N1C1BC2BC3B154.9°155.5°
N1C1BC2BH2B31.8°37.3°
N1C1BO4BC4B158.0°158.5°
C2N3C4HN3180.0°179.9°
C2N3C4O4179.8°180.0°
C2N3C4C50.3°0.1°
O2C2N3C4179.9°179.9°
O2C2N3HN30.0°0.0°
N3C4O4C5180.0°180.0°
N3C4C5C60.4°0.1°
N3C4C5H5179.6°179.9°
O4C4C5C6179.6°180.0°
O4C4C5H50.4°0.0°
O4C4N3HN30.2°0.1°
C4C5C6H5180.0°180.0°
C4C5C6H6179.3°179.7°
C5C4N3HN3179.7°180.0°
H5C5C6H60.7°0.3°
O2APAO5BO1A130.9°120.0°
O2APAO5BO3A115.3°120.0°
O2APAO1AO3A123.6°120.0°
O2APAO3APB110.8°40.0°
O2APAO1AHO1A0.0°179.9°
O2APAO5BC5B10.6°55.0°
O5BPAO1AO3A110.6°120.0°
O5BPAO3APB6.4°160.0°
O5BPAO1AHO1A125.8°60.0°
PAO5BC5BC4B157.2°180.0°
PAO5BC5BH5B37.3°60.0°
PAO5BC5BH5BA82.8°60.1°
O1APAO3APB119.0°80.0°
O1APAO5BC5B141.5°65.0°
PAO3APBO1B40.5°40.0°
PAO3APBO1'151.9°160.0°
PAO3APBO2B94.9°80.0°
O3APAO1AHO1A123.6°60.0°
O3APAO5BC5B104.7°175.0°
O3APBO1BO1'105.4°120.0°
O3APBO1BO2B129.4°120.0°
O3APBO1'O2B110.9°120.0°
O3APBO1'C1'127.1°175.0°
O3APBO2BHO2B132.7°60.1°
O1BPBO1'O2B130.9°120.0°
O1BPBO1'C1'114.7°55.0°
O1BPBO2BHO2B0.0°179.9°
PBO1'C1'O5'88.3°90.0°
PBO1'C1'C2'149.3°150.1°
PBO1'C1'H1'31.3°30.0°
O1'PBO2BHO2B123.5°60.0°
O2BPBO1'C1'16.2°65.0°
O1'C1'O5'C2'117.9°120.0°
O1'C1'O5'H1'123.9°120.1°
O1'C1'C2'H1'123.9°120.1°
O1'C1'C2'C3'61.4°62.4°
O1'C1'C2'C9'59.4°57.6°
O1'C1'C2'H2'177.8°177.7°
O1'C1'O5'C5'55.9°58.8°
O5'C1'C2'H1'119.8°120.0°
O5'C1'C2'C3'54.9°57.6°
O5'C1'C2'C9'175.7°177.6°
O5'C1'C2'H2'65.9°62.3°
C1'O5'C5'C4'59.9°61.2°
C1'O5'C5'C6'171.5°178.8°
C1'O5'C5'H5'55.9°58.8°
C1'C2'C3'C9'122.1°119.9°
C1'C2'C3'H2'119.4°119.9°
C1'C2'C9'H2'119.4°120.1°
C1'C2'C3'C4'50.3°57.0°
C1'C2'C3'O3'171.8°176.9°
C1'C2'C3'H3'68.5°62.9°
C2'C1'O5'C5'62.0°61.2°
C1'C2'C9'C7'64.2°65.0°
C1'C2'C9'H9'175.8°175.0°
C1'C2'C9'H9'A55.8°55.0°
H1'C1'C2'C3'174.7°177.6°
H1'C1'C2'C9'64.5°62.4°
H1'C1'C2'H2'53.9°57.6°
H1'C1'O5'C5'179.8°178.9°
O4BC1BC2BH1B124.7°118.6°
O4BC1BC2BO2'156.1°155.2°
O4BC1BC2BC3B39.3°37.0°
O4BC1BC2BH2B83.9°81.2°
C1BO4BC4BC3B20.9°26.5°
C1BO4BC4BC5B141.4°145.9°
C1BO4BC4BH4B98.0°93.0°
C1BC2BO2'C3B111.2°112.7°
C1BC2BO2'H2B124.9°123.6°
C1BC2BO2'HO2'180.0°180.0°
C1BC2BC3BH2B124.2°118.1°
C1BC2BC3BC4B25.9°20.9°
C1BC2BC3BO3B90.4°98.0°
C1BC2BC3BH3B149.2°139.5°
C2BC1BO4BC4B37.9°40.0°
H1BC1BC2BO2'31.5°36.6°
H1BC1BC2BC3B85.4°81.7°
H1BC1BC2BH2B151.5°160.2°
H1BC1BO4BC4B82.7°78.5°
C3'C2'C9'H2'120.8°120.2°
C2'C3'C4'O3'120.9°119.9°
C2'C3'C4'H3'119.4°119.8°
C2'C3'O3'H3'119.4°120.2°
C2'C3'O3'HO3'180.0°180.0°
C2'C3'C4'C5'54.8°57.0°
C2'C3'C4'O4'69.5°62.9°
C2'C3'C4'H4'171.6°176.9°
C3'C2'C9'C7'176.0°175.3°
C3'C2'C9'H9'56.0°55.3°
C3'C2'C9'H9'A64.0°64.7°
C9'C2'C3'C4'172.5°176.9°
C9'C2'C3'O3'66.1°63.2°
C9'C2'C3'H3'53.7°57.1°
C2'C9'C7'C8'179.5°180.0°
C2'C9'C7'H9'120.0°120.0°
C2'C9'C7'H9'A120.0°120.0°
C2'C9'C7'O7'1.3°0.0°
C2'C9'H9'H9'A114.3°120.0°
H2'C2'C3'C4'69.1°63.0°
H2'C2'C3'O3'52.3°56.9°
H2'C2'C3'H3'172.1°177.2°
H2'C2'C9'C7'55.2°55.1°
H2'C2'C9'H9'64.8°64.9°
H2'C2'C9'H9'A175.2°175.1°
O2'C2BC3BH2B120.1°123.6°
O2'C2BC3BC4B141.6°139.1°
O2'C2BC3BO3B25.3°20.3°
O2'C2BC3BH3B95.1°102.3°
HO2'O2'C2BC3B68.8°67.3°
HO2'O2'C2BH2B55.2°56.4°
C2BC3BC4BO3B117.1°118.7°
C2BC3BC4BH3B122.6°118.6°
C2BC3BO3BH3B123.1°122.5°
C2BC3BO3BHO3B180.0°61.4°
C2BC3BC4BO4B4.4°2.0°
C2BC3BC4BC5B109.6°121.5°
C2BC3BC4BH4B129.3°117.6°
H2BC2BC3BC4B98.3°97.3°
H2BC2BC3BO3B145.4°143.9°
H2BC2BC3BH3B25.1°21.4°
C4'C3'O3'H3'118.8°120.3°
C4'C3'O3'HO3'58.3°60.5°
C3'C4'C5'O4'123.5°119.9°
C3'C4'C5'H4'117.9°119.9°
C3'C4'O4'H4'118.1°120.1°
C3'C4'O4'HO4'180.0°180.0°
C3'C4'C5'C6'179.5°177.6°
C3'C4'C5'O5'57.7°57.6°
C3'C4'C5'H5'65.8°62.4°
O3'C3'C4'C5'175.7°176.9°
O3'C3'C4'O4'51.3°56.9°
O3'C3'C4'H4'67.5°63.2°
H3'C3'O3'HO3'60.6°59.8°
H3'C3'C4'C5'64.6°62.8°
H3'C3'C4'O4'171.1°177.2°
H3'C3'C4'H4'52.3°57.1°
C4BC3BO3BH3B123.7°122.7°
C4BC3BO3BHO3B66.8°176.3°
C3BC4BO4BC5B120.6°119.4°
C3BC4BO4BH4B118.9°119.5°
C3BC4BC5BH4B119.3°120.9°
C3BC4BC5BO5B41.7°175.0°
C3BC4BC5BH5B161.7°55.0°
C3BC4BC5BH5BA78.3°65.1°
O3BC3BC4BO4B112.7°120.7°
O3BC3BC4BC5B133.3°119.8°
O3BC3BC4BH4B12.2°1.1°
H3BC3BO3BHO3B56.9°61.1°
H3BC3BC4BO4B127.1°116.6°
H3BC3BC4BC5B13.0°2.9°
H3BC3BC4BH4B108.1°123.8°
C5'C4'O4'H4'116.9°120.2°
C5'C4'O4'HO4'55.0°60.3°
C4'C5'C6'O5'121.7°119.9°
C4'C5'C6'H5'114.9°120.1°
C4'C5'O5'H5'115.8°120.0°
C4'C5'C6'O6'6.9°175.0°
C4'C5'C6'H6'126.9°55.0°
C4'C5'C6'H6'A113.0°65.0°
O4'C4'C5'C6'56.1°57.7°
O4'C4'C5'O5'65.8°62.3°
O4'C4'C5'H5'170.7°177.7°
H4'C4'O4'HO4'61.9°59.9°
H4'C4'C5'C6'62.6°62.5°
H4'C4'C5'O5'175.5°177.5°
H4'C4'C5'H5'52.1°57.5°
O4BC4BC5BH4B124.7°121.2°
O4BC4BC5BO5B74.3°67.1°
O4BC4BC5BH5B45.7°172.9°
O4BC4BC5BH5BA165.7°52.8°
C4BC5BO5BH5B120.0°120.0°
C4BC5BO5BH5BA120.0°119.9°
C4BC5BH5BH5BA119.9°120.1°
H4BC4BC5BO5B161.0°54.1°
H4BC4BC5BH5B79.0°65.9°
H4BC4BC5BH5BA41.0°174.0°
C6'C5'O5'H5'115.6°120.0°
C5'C6'O6'H6'120.0°120.0°
C5'C6'O6'H6'A120.0°120.0°
C5'C6'H6'H6'A119.2°120.0°
C5'C6'O6'HO6'180.0°180.0°
O5'C5'C6'O6'114.7°65.1°
O5'C5'C6'H6'5.3°174.9°
O5'C5'C6'H6'A125.3°54.9°
H5'C5'C6'O6'121.8°55.0°
H5'C5'C6'H6'118.2°65.1°
H5'C5'C6'H6'A1.9°174.9°
O5BC5BH5BH5BA119.9°120.0°
O6'C6'H6'H6'A119.2°120.0°
H6'C6'O6'HO6'60.0°60.0°
H6'AC6'O6'HO6'60.0°60.0°
C8'C7'C9'O7'179.2°180.0°
C7'C8'H8'H8'A120.0°120.0°
C7'C8'H8'H8'B120.0°120.0°
C7'C8'H8'AH8'B120.0°119.9°
C8'C7'C9'H9'59.5°60.0°
C8'C7'C9'H9'A60.5°60.0°
C9'C7'C8'H8'179.3°180.0°
C9'C7'C8'H8'A60.8°60.0°
C9'C7'C8'H8'B59.3°59.9°
C7'C9'H9'H9'A114.3°120.0°
O7'C7'C8'H8'0.0°0.0°
O7'C7'C8'H8'A120.0°120.0°
O7'C7'C8'H8'B120.0°120.0°
O7'C7'C9'H9'121.3°120.0°
O7'C7'C9'H9'A118.7°120.0°
H8'C8'H8'AH8'B120.0°120.0°

225946

PDB entries from 2024-10-09

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