UD5
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | sing | 1.61Å | 1.49Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| P | O5' | sing | 1.61Å | 1.60Å | |
| OP1 | H1P | sing | 0.97Å | 0.95Å | |
| OP2 | H2P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.45Å | 1.46Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.40Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | H2 | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.11Å | |
| O2' | H1 | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.36Å | |
| C2 | O2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.36Å | |
| N3 | C4 | sing | 1.35Å | 1.37Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C4 | C5 | sing | 1.42Å | 1.44Å | |
| C5 | C6 | doub | 1.35Å | 1.33Å | |
| C5 | F | sing | 1.35Å | 1.36Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.4° | 95.0° |
| OP1 | P | O5' | 110.1° | 95.0° |
| P | OP1 | H1P | 119.4° | 106.8° |
| OP2 | P | O5' | 108.5° | 95.0° |
| P | OP2 | H2P | 119.4° | 106.8° |
| P | O5' | C5' | 122.3° | 106.8° |
| O5' | C5' | C4' | 109.8° | 109.5° |
| O5' | C5' | H5' | 112.1° | 109.5° |
| O5' | C5' | H5'' | 112.0° | 109.5° |
| C4' | C5' | H5' | 112.1° | 109.4° |
| C4' | C5' | H5'' | 112.1° | 109.4° |
| C5' | C4' | O4' | 110.5° | 110.4° |
| C5' | C4' | C3' | 110.3° | 110.7° |
| C5' | C4' | H4' | 106.9° | 110.4° |
| H5' | C5' | H5'' | 98.3° | 109.5° |
| O4' | C4' | C3' | 105.2° | 104.7° |
| O4' | C4' | H4' | 111.9° | 110.3° |
| C4' | O4' | C1' | 108.7° | 105.4° |
| C3' | C4' | H4' | 112.0° | 110.3° |
| C4' | C3' | O3' | 108.9° | 110.5° |
| C4' | C3' | C2' | 105.9° | 104.2° |
| C4' | C3' | H3' | 113.2° | 110.5° |
| O4' | C1' | C2' | 110.9° | 104.8° |
| O4' | C1' | N1 | 113.3° | 110.5° |
| O4' | C1' | H1' | 111.7° | 110.4° |
| O3' | C3' | C2' | 112.5° | 110.5° |
| O3' | C3' | H3' | 106.8° | 110.4° |
| C3' | O3' | H2 | 108.9° | 106.8° |
| C2' | C3' | H3' | 109.7° | 110.5° |
| C3' | C2' | O2' | 116.4° | 110.5° |
| C3' | C2' | C1' | 99.4° | 104.1° |
| C3' | C2' | H2' | 110.4° | 110.5° |
| O2' | C2' | C1' | 105.0° | 110.7° |
| O2' | C2' | H2' | 105.3° | 110.4° |
| C2' | O2' | H1 | 116.4° | 106.8° |
| C1' | C2' | H2' | 120.9° | 110.6° |
| C2' | C1' | N1 | 121.5° | 110.3° |
| C2' | C1' | H1' | 100.4° | 110.4° |
| N1 | C1' | H1' | 97.1° | 110.3° |
| C1' | N1 | C2 | 115.8° | 119.7° |
| C1' | N1 | C6 | 122.7° | 119.7° |
| C2 | N1 | C6 | 121.5° | 120.6° |
| N1 | C2 | O2 | 122.7° | 119.6° |
| N1 | C2 | N3 | 115.1° | 121.0° |
| N1 | C6 | C5 | 122.2° | 119.7° |
| N1 | C6 | H6 | 120.1° | 120.1° |
| O2 | C2 | N3 | 122.1° | 119.5° |
| C2 | N3 | C4 | 126.5° | 120.3° |
| C2 | N3 | HN3 | 116.7° | 119.9° |
| C4 | N3 | HN3 | 116.9° | 119.9° |
| N3 | C4 | O4 | 119.1° | 120.3° |
| N3 | C4 | C5 | 114.7° | 119.4° |
| O4 | C4 | C5 | 126.2° | 120.3° |
| C4 | C5 | C6 | 120.0° | 119.1° |
| C4 | C5 | F | 120.4° | 120.4° |
| C6 | C5 | F | 119.6° | 120.5° |
| C5 | C6 | H6 | 117.8° | 120.2° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | O5' | 127.3° | 95.4° |
| OP1 | P | OP2 | H2P | 180.0° | 84.5° |
| OP1 | P | O5' | C5' | 175.5° | 99.6° |
| OP2 | P | OP1 | H1P | 179.9° | 84.5° |
| OP2 | P | O5' | C5' | 52.1° | 165.0° |
| O5' | P | OP1 | H1P | 53.6° | 179.9° |
| O5' | P | OP2 | H2P | 52.8° | 180.0° |
| P | O5' | C5' | C4' | 156.4° | 180.0° |
| P | O5' | C5' | H5' | 78.3° | 60.1° |
| P | O5' | C5' | H5'' | 31.2° | 60.0° |
| O5' | C5' | C4' | H5' | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.2° | 120.1° |
| O5' | C5' | H5' | H5'' | 117.9° | 120.1° |
| O5' | C5' | C4' | O4' | 80.1° | 66.5° |
| O5' | C5' | C4' | C3' | 163.9° | 178.1° |
| O5' | C5' | C4' | H4' | 41.9° | 55.7° |
| C4' | C5' | H5' | H5'' | 118.0° | 119.9° |
| C5' | C4' | O4' | C3' | 119.1° | 119.1° |
| C5' | C4' | O4' | H4' | 119.0° | 122.2° |
| C5' | C4' | C3' | H4' | 119.0° | 122.4° |
| C5' | C4' | O4' | C1' | 116.1° | 159.5° |
| C5' | C4' | C3' | O3' | 141.2° | 98.6° |
| C5' | C4' | C3' | C2' | 97.6° | 142.7° |
| C5' | C4' | C3' | H3' | 22.6° | 24.0° |
| H5' | C5' | C4' | O4' | 45.2° | 173.6° |
| H5' | C5' | C4' | C3' | 70.8° | 58.2° |
| H5' | C5' | C4' | H4' | 167.2° | 64.2° |
| H5'' | C5' | C4' | O4' | 154.6° | 53.6° |
| H5'' | C5' | C4' | C3' | 38.7° | 61.8° |
| H5'' | C5' | C4' | H4' | 83.4° | 175.8° |
| O4' | C4' | C3' | H4' | 121.8° | 118.7° |
| O4' | C4' | C3' | O3' | 99.7° | 142.5° |
| O4' | C4' | C3' | C2' | 21.5° | 23.8° |
| O4' | C4' | C3' | H3' | 141.8° | 94.9° |
| C4' | O4' | C1' | C2' | 17.4° | 40.4° |
| C4' | O4' | C1' | N1 | 157.9° | 159.2° |
| C4' | O4' | C1' | H1' | 93.6° | 78.4° |
| C3' | C4' | O4' | C1' | 2.9° | 40.3° |
| C4' | C3' | O3' | C2' | 117.1° | 114.8° |
| C4' | C3' | O3' | H3' | 122.6° | 122.6° |
| C4' | C3' | C2' | H3' | 122.5° | 118.7° |
| C4' | C3' | O3' | H2 | 180.0° | 178.1° |
| C4' | C3' | C2' | O2' | 141.8° | 118.9° |
| C4' | C3' | C2' | C1' | 29.7° | 0.1° |
| C4' | C3' | C2' | H2' | 98.3° | 118.6° |
| H4' | C4' | O4' | C1' | 124.8° | 78.3° |
| H4' | C4' | C3' | O3' | 22.2° | 23.8° |
| H4' | C4' | C3' | C2' | 143.4° | 94.9° |
| H4' | C4' | C3' | H3' | 96.4° | 146.4° |
| O4' | C1' | C2' | C3' | 29.5° | 24.0° |
| O4' | C1' | C2' | O2' | 150.2° | 142.7° |
| O4' | C1' | C2' | N1 | 136.8° | 118.9° |
| O4' | C1' | C2' | H1' | 118.1° | 118.9° |
| O4' | C1' | C2' | H2' | 91.2° | 94.6° |
| O4' | C1' | N1 | H1' | 117.3° | 122.4° |
| O4' | C1' | N1 | C2 | 151.6° | 50.1° |
| O4' | C1' | N1 | C6 | 27.0° | 129.5° |
| O3' | C3' | C2' | H3' | 118.6° | 122.6° |
| O3' | C3' | C2' | O2' | 22.9° | 0.2° |
| O3' | C3' | C2' | C1' | 89.1° | 118.6° |
| O3' | C3' | C2' | H2' | 142.8° | 122.7° |
| C2' | C3' | O3' | H2 | 62.9° | 63.3° |
| C3' | C2' | O2' | C1' | 108.8° | 114.7° |
| C3' | C2' | O2' | H2' | 122.6° | 122.5° |
| C3' | C2' | C1' | H2' | 120.7° | 118.6° |
| C3' | C2' | O2' | H1 | 180.0° | 61.4° |
| C3' | C2' | C1' | N1 | 166.3° | 142.9° |
| C3' | C2' | C1' | H1' | 88.6° | 94.9° |
| H3' | C3' | O3' | H2 | 57.4° | 59.3° |
| H3' | C3' | C2' | O2' | 95.7° | 122.4° |
| H3' | C3' | C2' | C1' | 152.2° | 118.8° |
| H3' | C3' | C2' | H2' | 24.2° | 0.1° |
| O2' | C2' | C1' | H2' | 118.6° | 122.7° |
| O2' | C2' | C1' | N1 | 73.0° | 98.4° |
| O2' | C2' | C1' | H1' | 32.1° | 23.8° |
| C1' | C2' | O2' | H1 | 71.3° | 176.1° |
| C2' | C1' | N1 | H1' | 106.8° | 122.2° |
| C2' | C1' | N1 | C2 | 72.5° | 65.3° |
| C2' | C1' | N1 | C6 | 108.8° | 115.0° |
| H2' | C2' | O2' | H1 | 57.4° | 61.1° |
| H2' | C2' | C1' | N1 | 45.6° | 24.3° |
| H2' | C2' | C1' | H1' | 150.7° | 146.5° |
| C1' | N1 | C2 | C6 | 178.7° | 179.6° |
| C1' | N1 | C2 | O2 | 2.5° | 0.3° |
| C1' | N1 | C2 | N3 | 177.2° | 179.8° |
| C1' | N1 | C6 | C5 | 177.1° | 179.9° |
| C1' | N1 | C6 | H6 | 2.9° | 0.1° |
| H1' | C1' | N1 | C2 | 34.3° | 172.5° |
| H1' | C1' | N1 | C6 | 144.4° | 7.2° |
| N1 | C2 | O2 | N3 | 179.7° | 179.5° |
| N1 | C2 | N3 | C4 | 0.4° | 0.6° |
| N1 | C2 | N3 | HN3 | 179.5° | 179.7° |
| C2 | N1 | C6 | C5 | 1.5° | 0.3° |
| C2 | N1 | C6 | H6 | 178.5° | 179.7° |
| C6 | N1 | C2 | O2 | 178.8° | 179.9° |
| C6 | N1 | C2 | N3 | 1.5° | 0.6° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| N1 | C6 | C5 | F | 179.6° | 180.0° |
| O2 | C2 | N3 | C4 | 179.8° | 179.9° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.2° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 179.0° | 179.7° |
| C2 | N3 | C4 | C5 | 0.6° | 0.3° |
| N3 | C4 | O4 | C5 | 179.6° | 180.0° |
| N3 | C4 | C5 | C6 | 0.7° | 0.0° |
| N3 | C4 | C5 | F | 178.6° | 180.0° |
| HN3 | N3 | C4 | O4 | 0.9° | 0.0° |
| HN3 | N3 | C4 | C5 | 179.4° | 180.0° |
| O4 | C4 | C5 | C6 | 179.0° | 180.0° |
| O4 | C4 | C5 | F | 1.8° | 0.1° |
| C4 | C5 | C6 | F | 179.3° | 179.9° |
| C4 | C5 | C6 | H6 | 179.7° | 180.0° |
| F | C5 | C6 | H6 | 0.4° | 0.0° |
