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UD4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N3sing1.35Å1.34Å
C4N3sing1.35Å1.35Å
N1C2sing1.35Å1.41Å
C2O2doub1.22Å1.26Å
C1BN1sing1.47Å1.45Å
C6N1sing1.37Å1.35Å
C5C4sing1.42Å1.39Å
C4O4doub1.22Å1.26Å
C6C5doub1.35Å1.39Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
O7'C7'doub1.21Å1.23Å
C8'C7'sing1.51Å1.51Å
C7'N2'sing1.35Å1.34Å
C8'H8'sing1.09Å1.10Å
C8'H8'Asing1.09Å1.10Å
C8'H8'Bsing1.09Å1.10Å
N2'C2'sing1.46Å1.46Å
N2'HN2'sing0.97Å1.00Å
C2'C3'sing1.53Å1.54Å
C2'C1'sing1.53Å1.53Å
C2'H2'sing1.09Å1.10Å
O3'C3'sing1.43Å1.44Å
C3'C4'sing1.53Å1.55Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'N4Asing1.47Å1.47Å
C4'C5'sing1.53Å1.54Å
C4'H4'sing1.09Å1.10Å
N4AHN4Asing1.01Å1.00Å
N4AHN4Bsing1.01Å1.00Å
O5'C5'sing1.43Å1.44Å
C5'C6'sing1.53Å1.53Å
C5'H5'sing1.09Å1.10Å
C6'H6'sing1.09Å1.10Å
C6'H6'Asing1.09Å1.10Å
C6'H6'Bsing1.09Å1.10Å
C1'O5'sing1.43Å1.43Å
C1'O1'sing1.43Å1.42Å
C1'H1'sing1.09Å1.10Å
O1'PBsing1.61Å1.60Å
O3APBsing1.61Å1.62Å
PBO2Bdoub1.48Å1.50Å
PBO1Bsing1.61Å1.51Å
O1BHO1Bsing0.97Å0.95Å
PAO3Asing1.61Å1.62Å
O1APAdoub1.48Å1.51Å
O2APAsing1.61Å1.50Å
PAO5Bsing1.61Å1.61Å
O2AHO2Asing0.97Å0.95Å
O5BC5Bsing1.43Å1.44Å
C5BC4Bsing1.53Å1.52Å
C5BH5Bsing1.09Å1.10Å
C5BH5BAsing1.09Å1.10Å
C2BC4Bsing1.54Å1.54Å
C4BO4Bsing1.44Å1.43Å
C4BH4Bsing1.09Å1.10Å
C1BO4Bsing1.44Å1.43Å
C2BO3Bsing1.43Å1.43Å
C2BC3Bsing1.55Å1.52Å
C2BH2Bsing1.09Å1.10Å
O3BHO3Bsing0.97Å0.95Å
O2'C3Bsing1.43Å1.43Å
C3BC1Bsing1.55Å1.53Å
C3BH3Bsing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1BH1Bsing1.09Å1.10Å
N3HN3sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N3C4120.9°120.2°
N3C2N1119.2°120.9°
N3C2O2121.3°119.5°
C2N3HN3119.6°119.9°
N3C4C5121.3°119.4°
N3C4O4119.4°120.3°
C4N3HN3119.6°119.9°
N1C2O2119.5°119.5°
C2N1C1B117.9°119.7°
C2N1C6120.7°120.6°
C1BN1C6121.4°119.7°
N1C1BO4B110.5°110.6°
N1C1BC3B110.6°110.6°
N1C1BH1B106.7°110.5°
N1C6C5119.6°119.7°
N1C6H6120.2°120.2°
C5C4O4119.3°120.3°
C4C5C6118.3°119.1°
C4C5H5120.8°120.4°
C6C5H5120.9°120.5°
C5C6H6120.2°120.1°
O7'C7'C8'122.3°120.0°
O7'C7'N2'121.6°120.0°
C8'C7'N2'116.1°120.0°
C7'C8'H8'109.5°109.4°
C7'C8'H8'A109.5°109.5°
C7'C8'H8'B109.4°109.4°
C7'N2'C2'123.6°120.0°
C7'N2'HN2'118.2°120.0°
H8'C8'H8'A109.5°109.5°
H8'C8'H8'B109.4°109.5°
H8'AC8'H8'B109.5°109.6°
C2'N2'HN2'118.2°120.0°
N2'C2'C3'111.1°109.5°
N2'C2'C1'108.9°109.6°
N2'C2'H2'109.2°109.5°
C3'C2'C1'110.7°109.2°
C3'C2'H2'107.4°109.5°
C2'C3'O3'110.1°109.6°
C2'C3'C4'112.2°109.1°
C2'C3'H3'107.5°109.5°
C1'C2'H2'109.6°109.5°
C2'C1'O5'111.6°109.4°
C2'C1'O1'108.5°109.5°
C2'C1'H1'108.2°109.5°
O3'C3'C4'110.4°109.6°
O3'C3'H3'109.3°109.6°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'107.2°109.5°
C3'C4'N4A109.8°109.5°
C3'C4'C5'110.4°109.2°
C3'C4'H4'109.3°109.5°
N4AC4'C5'111.4°109.6°
N4AC4'H4'108.3°109.5°
C4'N4AHN4A109.5°111.0°
C4'N4AHN4B109.5°111.0°
C5'C4'H4'107.6°109.6°
C4'C5'O5'110.6°109.4°
C4'C5'C6'113.8°109.5°
C4'C5'H5'104.9°109.5°
HN4AN4AHN4B109.4°111.0°
O5'C5'C6'107.0°109.5°
O5'C5'H5'112.0°109.5°
C5'O5'C1'116.8°114.1°
C6'C5'H5'108.6°109.5°
C5'C6'H6'109.5°109.5°
C5'C6'H6'A109.5°109.5°
C5'C6'H6'B109.5°109.4°
H6'C6'H6'A109.5°109.5°
H6'C6'H6'B109.4°109.5°
H6'AC6'H6'B109.5°109.5°
O5'C1'O1'107.8°109.5°
O5'C1'H1'108.8°109.5°
O1'C1'H1'111.9°109.5°
C1'O1'PB120.3°123.0°
O1'PBO3A99.3°109.5°
O1'PBO2B106.8°109.5°
O1'PBO1B107.2°109.5°
O3APBO2B116.4°109.4°
O3APBO1B105.2°109.5°
PBO3APA131.9°134.0°
O2BPBO1B119.8°109.5°
PBO1BHO1B109.5°114.0°
O3APAO1A107.7°109.5°
O3APAO2A103.8°109.5°
O3APAO5B102.8°109.5°
O1APAO2A123.4°109.5°
O1APAO5B108.6°109.4°
O2APAO5B108.6°109.5°
PAO2AHO2A109.5°114.0°
PAO5BC5B122.8°123.0°
O5BC5BC4B105.6°109.5°
O5BC5BH5B110.8°109.5°
O5BC5BH5BA111.6°109.4°
C4BC5BH5B110.8°109.5°
C4BC5BH5BA111.7°109.5°
C5BC4BC2B110.1°109.9°
C5BC4BO4B107.7°109.8°
C5BC4BH4B109.8°109.9°
H5BC5BH5BA106.5°109.5°
C2BC4BO4B108.0°107.3°
C2BC4BH4B109.5°110.1°
C4BC2BO3B110.5°110.5°
C4BC2BC3B103.4°104.2°
C4BC2BH2B113.6°110.5°
O4BC4BH4B111.7°109.9°
C4BO4BC1B108.3°107.0°
O4BC1BC3B105.4°103.5°
O4BC1BH1B111.8°110.8°
O3BC2BC3B111.9°110.5°
O3BC2BH2B105.4°110.5°
C2BO3BHO3B109.5°114.0°
C3BC2BH2B112.2°110.6°
C2BC3BO2'113.8°110.9°
C2BC3BC1B102.1°102.1°
C2BC3BH3B113.1°110.9°
O2'C3BC1B113.5°110.9°
O2'C3BH3B101.5°110.8°
C3BO2'HO2'109.5°114.1°
C1BC3BH3B113.3°110.9°
C3BC1BH1B111.8°110.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N3C4HN3180.0°179.6°
N3C2N1O2179.5°180.0°
N3C2N1C1B179.7°179.9°
N3C2N1C60.5°0.0°
C2N3C4C50.5°0.4°
C2N3C4O4180.0°179.7°
C4N3C2N10.6°0.3°
C4N3C2O2179.9°179.6°
N3C4C5O4179.5°179.9°
N3C4C5C60.3°0.1°
N3C4C5H5179.7°180.0°
C2N1C1BC6179.2°179.9°
C2N1C6C50.2°0.3°
C2N1C6H6179.8°180.0°
C2N1C1BO4B123.2°130.9°
C2N1C1BC3B120.5°115.0°
C2N1C1BH1B1.3°7.8°
N1C2N3HN3179.4°179.9°
O2C2N1C1B0.8°0.1°
O2C2N1C6179.9°180.0°
O2C2N3HN30.1°0.0°
C1BN1C6C5179.4°179.8°
C1BN1C6H60.6°0.1°
N1C1BO4BC4B149.4°158.6°
N1C1BO4BC3B119.5°118.5°
N1C1BO4BH1B118.8°122.9°
N1C1BC3BC2B155.8°155.5°
N1C1BC3BO2'81.3°86.3°
N1C1BC3BH1B118.8°122.8°
N1C1BC3BH3B33.9°37.3°
N1C6C5C40.1°0.3°
N1C6C5H6180.0°179.7°
N1C6C5H5179.9°179.6°
C6N1C1BO4B57.6°49.0°
C6N1C1BC3B58.7°65.0°
C6N1C1BH1B179.5°172.1°
C4C5C6H5180.0°179.9°
C4C5C6H6179.9°179.9°
C5C4N3HN3179.4°180.0°
O4C4C5C6179.8°180.0°
O4C4C5H50.2°0.1°
O4C4N3HN30.1°0.1°
H5C5C6H60.1°0.0°
O7'C7'C8'N2'179.4°180.0°
O7'C7'C8'H8'20.7°0.0°
O7'C7'C8'H8'A140.7°120.0°
O7'C7'C8'H8'B99.3°120.0°
O7'C7'N2'C2'2.8°0.1°
O7'C7'N2'HN2'177.3°180.0°
C7'C8'H8'H8'A120.0°119.9°
C7'C8'H8'H8'B120.0°119.9°
C7'C8'H8'AH8'B120.0°120.0°
C8'C7'N2'C2'177.9°180.0°
C8'C7'N2'HN2'2.1°0.1°
N2'C7'C8'H8'158.7°180.0°
N2'C7'C8'H8'A38.7°60.0°
N2'C7'C8'H8'B81.4°60.1°
C7'N2'C2'HN2'180.0°179.9°
C7'N2'C2'C3'110.3°155.0°
C7'N2'C2'C1'127.5°85.3°
C7'N2'C2'H2'7.9°34.9°
H8'C8'H8'AH8'B120.0°120.1°
N2'C2'C3'C1'121.1°120.0°
N2'C2'C3'H2'119.3°120.1°
N2'C2'C1'H2'119.4°120.2°
N2'C2'C3'O3'65.0°63.2°
N2'C2'C3'C4'171.6°176.9°
N2'C2'C3'H3'54.0°57.1°
N2'C2'C1'O5'173.6°177.5°
N2'C2'C1'O1'55.0°57.5°
N2'C2'C1'H1'66.7°62.5°
HN2'N2'C2'C3'69.7°25.1°
HN2'N2'C2'C1'52.4°94.6°
HN2'N2'C2'H2'172.1°145.2°
C3'C2'C1'H2'118.2°119.9°
C2'C3'O3'C4'124.4°119.6°
C2'C3'O3'H3'117.9°120.2°
C2'C3'C4'H3'117.8°119.9°
C2'C3'O3'HO3'178.6°180.0°
C2'C3'C4'N4A174.4°176.9°
C2'C3'C4'C5'51.2°56.9°
C2'C3'C4'H4'67.0°63.0°
C3'C2'C1'O5'51.3°57.6°
C3'C2'C1'O1'67.4°62.4°
C3'C2'C1'H1'171.0°177.6°
C1'C2'C3'O3'173.9°176.8°
C1'C2'C3'C4'50.5°56.9°
C1'C2'C3'H3'67.1°62.9°
C2'C1'O5'C5'56.6°61.1°
C2'C1'O5'O1'119.0°120.0°
C2'C1'O5'H1'119.3°120.0°
C2'C1'O1'H1'119.3°120.0°
C2'C1'O1'PB137.3°150.0°
H2'C2'C3'O3'54.3°56.9°
H2'C2'C3'C4'69.1°63.0°
H2'C2'C3'H3'173.4°177.2°
H2'C2'C1'O5'67.0°62.3°
H2'C2'C1'O1'174.4°177.7°
H2'C2'C1'H1'52.7°57.7°
O3'C3'C4'H3'119.0°120.2°
O3'C3'C4'N4A62.4°63.2°
O3'C3'C4'C5'174.4°176.8°
O3'C3'C4'H4'56.2°56.9°
C4'C3'O3'HO3'54.3°60.4°
C3'C4'N4AC5'122.7°119.7°
C3'C4'N4AH4'119.2°120.1°
C3'C4'C5'H4'119.2°119.9°
C3'C4'N4AHN4A139.2°180.0°
C3'C4'N4AHN4B19.2°56.1°
C3'C4'C5'O5'52.1°57.6°
C3'C4'C5'C6'172.5°177.6°
C3'C4'C5'H5'68.8°62.4°
H3'C3'O3'HO3'63.4°59.8°
H3'C3'C4'N4A56.6°57.0°
H3'C3'C4'C5'66.6°62.9°
H3'C3'C4'H4'175.2°177.1°
N4AC4'C5'H4'118.5°120.2°
C4'N4AHN4AHN4B120.0°123.9°
N4AC4'C5'O5'174.4°177.5°
N4AC4'C5'C6'65.2°62.5°
N4AC4'C5'H5'53.5°57.5°
C5'C4'N4AHN4A16.5°60.3°
C5'C4'N4AHN4B103.5°63.6°
C4'C5'O5'C6'124.5°120.0°
C4'C5'O5'H5'116.6°120.0°
C4'C5'C6'H5'116.5°120.0°
C4'C5'C6'H6'145.5°60.0°
C4'C5'C6'H6'A25.5°180.0°
C4'C5'C6'H6'B94.6°60.0°
C4'C5'O5'C1'56.8°61.1°
H4'C4'N4AHN4A101.6°59.9°
H4'C4'N4AHN4B138.4°176.2°
H4'C4'C5'O5'67.1°62.3°
H4'C4'C5'C6'53.4°57.7°
H4'C4'C5'H5'172.0°177.7°
O5'C5'C6'H5'121.1°120.0°
O5'C5'C6'H6'92.0°60.0°
O5'C5'C6'H6'A147.9°60.1°
O5'C5'C6'H6'B27.9°179.9°
C5'O5'C1'O1'62.5°58.8°
C5'O5'C1'H1'175.9°178.9°
C5'C6'H6'H6'A120.0°120.1°
C5'C6'H6'H6'B120.0°119.9°
C5'C6'H6'AH6'B120.0°120.0°
C6'C5'O5'C1'178.7°178.8°
H5'C5'C6'H6'29.0°180.0°
H5'C5'C6'H6'A91.0°59.9°
H5'C5'C6'H6'B149.0°60.1°
H5'C5'O5'C1'59.8°58.8°
H6'C6'H6'AH6'B119.9°120.0°
O5'C1'O1'H1'119.7°120.0°
O5'C1'O1'PB101.7°90.1°
C1'O1'PBO3A54.9°175.0°
C1'O1'PBO2B176.2°55.0°
C1'O1'PBO1B54.3°65.0°
H1'C1'O1'PB18.0°30.0°
O1'PBO3AO2B114.1°120.0°
O1'PBO3AO1B110.8°120.0°
O1'PBO2BO1B121.9°120.0°
O1'PBO1BHO1B142.3°60.0°
O1'PBO3APA124.4°165.0°
O3APBO2BO1B128.3°120.0°
O3APBO1BHO1B112.6°60.1°
PBO3APAO1A71.7°45.0°
PBO3APAO2A156.0°75.0°
PBO3APAO5B42.9°165.0°
O2BPBO1BHO1B20.7°179.9°
O2BPBO3APA10.3°45.0°
O1BPBO3APA124.8°75.0°
O3APAO1AO2A120.6°120.0°
O3APAO1AO5B110.7°120.0°
O3APAO2AO5B108.9°120.0°
O3APAO2AHO2A114.1°60.0°
O3APAO5BC5B58.9°175.0°
O1APAO2AO5B128.7°120.0°
O1APAO2AHO2A8.3°180.0°
O1APAO5BC5B172.8°55.0°
O2APAO5BC5B50.6°64.9°
O5BPAO2AHO2A137.1°60.1°
PAO5BC5BC4B175.0°180.0°
PAO5BC5BH5B65.0°59.9°
PAO5BC5BH5BA53.5°60.0°
O5BC5BC4BH5B120.0°120.0°
O5BC5BC4BH5BA121.5°119.9°
O5BC5BH5BH5BA121.5°119.9°
O5BC5BC4BC2B59.9°175.7°
O5BC5BC4BO4B177.5°66.5°
O5BC5BC4BH4B60.6°54.5°
C4BC5BH5BH5BA121.6°120.0°
C5BC4BC2BO4B117.4°119.4°
C5BC4BC2BH4B120.7°121.1°
C5BC4BO4BH4B120.6°121.0°
C5BC4BO4BC1B130.2°145.9°
C5BC4BC2BO3B134.6°119.9°
C5BC4BC2BC3B105.5°121.4°
C5BC4BC2BH2B16.4°2.6°
H5BC5BC4BC2B179.9°64.3°
H5BC5BC4BO4B62.5°53.5°
H5BC5BC4BH4B59.4°174.5°
H5BAC5BC4BC2B61.6°55.8°
H5BAC5BC4BO4B56.0°173.6°
H5BAC5BC4BH4B177.9°65.4°
C2BC4BO4BH4B120.5°119.6°
C2BC4BO4BC1B11.3°26.5°
C4BC2BO3BC3B114.6°114.7°
C4BC2BO3BH2B123.1°122.5°
C4BC2BC3BH2B122.8°118.7°
C4BC2BO3BHO3B131.8°179.9°
C4BC2BC3BO2'151.1°139.1°
C4BC2BC3BC1B28.3°20.9°
C4BC2BC3BH3B93.8°97.3°
O4BC4BC2BO3B108.0°120.7°
O4BC4BC2BC3B11.9°2.0°
O4BC4BC2BH2B133.8°116.8°
C4BO4BC1BC3B29.9°40.1°
C4BO4BC1BH1B91.8°78.5°
H4BC4BO4BC1B109.2°93.1°
H4BC4BC2BO3B13.9°1.2°
H4BC4BC2BC3B133.7°117.5°
H4BC4BC2BH2B104.3°123.7°
O4BC1BC3BC2B36.3°37.0°
O4BC1BC3BO2'159.2°155.2°
O4BC1BC3BH1B121.7°118.7°
O4BC1BC3BH3B85.6°81.2°
O3BC2BC3BH2B118.3°122.7°
O3BC2BC3BO2'32.2°20.5°
O3BC2BC3BC1B90.6°97.8°
O3BC2BC3BH3B147.3°144.0°
C3BC2BO3BHO3B113.6°65.3°
C2BC3BO2'C1B116.2°112.7°
C2BC3BO2'H3B121.8°123.6°
C2BC3BC1BH3B121.9°118.2°
C2BC3BO2'HO2'64.8°61.4°
C2BC3BC1BH1B85.4°81.6°
H2BC2BO3BHO3B8.7°57.4°
H2BC2BC3BO2'86.1°102.2°
H2BC2BC3BC1B151.1°139.6°
H2BC2BC3BH3B29.0°21.4°
O2'C3BC1BH3B115.2°123.6°
O2'C3BC1BH1B37.5°36.6°
C1BC3BO2'HO2'179.0°174.1°
H3BC3BO2'HO2'57.0°62.2°
H3BC3BC1BH1B152.7°160.2°

218853

PDB entries from 2024-04-24

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