Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

UD2

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4doub1.22Å1.22Å
C4N3sing1.35Å1.42Å
C4C5sing1.42Å1.45Å
N3C2sing1.35Å1.40Å
C5C6doub1.35Å1.34Å
C2O2doub1.22Å1.23Å
C2N1sing1.34Å1.41Å
C6N1sing1.37Å1.42Å
N1C1Bsing1.46Å1.49Å
O2'C2Bsing1.43Å1.42Å
C1BC2Bsing1.55Å1.53Å
C1BO4Bsing1.44Å1.45Å
C2BC3Bsing1.55Å1.52Å
O2APAdoub1.48Å1.46Å
O4BC4Bsing1.44Å1.47Å
O6'C6'sing1.43Å1.42Å
O5BPAsing1.61Å1.60Å
O5BC5Bsing1.43Å1.42Å
C3BC4Bsing1.54Å1.53Å
C3BO3Bsing1.43Å1.44Å
PAO3Asing1.61Å1.58Å
PAO1Asing1.61Å1.49Å
C4BC5Bsing1.53Å1.52Å
O3APBsing1.61Å1.57Å
C6'C5'sing1.53Å1.53Å
O2BPBdoub1.48Å1.50Å
C5'O5'sing1.43Å1.48Å
C5'C4'sing1.53Å1.56Å
PBO1Bsing1.61Å1.47Å
PBO1'sing1.61Å1.62Å
O5'C1'sing1.43Å1.47Å
C4'O4'sing1.43Å1.44Å
C4'C3'sing1.53Å1.55Å
O1'C1'sing1.43Å1.44Å
C1'C2'sing1.53Å1.55Å
C3'C2'sing1.53Å1.55Å
C3'O3'sing1.43Å1.42Å
C2'N2'sing1.47Å1.48Å
N2'C7'sing1.35Å1.35Å
C7'O7'doub1.21Å1.25Å
C7'C8'sing1.51Å1.52Å
C1'H1'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C6'H6'1sing1.09Å1.10Å
C6'H6'2sing1.09Å1.10Å
C8'H8'1sing1.09Å1.10Å
C8'H8'2sing1.09Å1.10Å
C8'H8'3sing1.09Å1.10Å
N2'HN2'sing0.97Å1.00Å
O3'HO3'sing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
N3HN3sing0.97Å1.00Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
C1BH1Bsing1.09Å1.10Å
C2BH2Bsing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3BH3Bsing1.09Å1.10Å
C4BH4Bsing1.09Å1.10Å
O3BHO3Asing0.97Å0.95Å
C5BH5'1sing1.09Å1.10Å
C5BH5'2sing1.09Å1.10Å
O1AHOA2sing0.97Å0.95Å
O1BHOB2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O4C4N3120.6°120.3°
O4C4C5123.9°120.3°
N3C4C5115.5°119.4°
C4N3C2127.0°120.2°
C4N3HN3116.5°119.9°
C4C5C6119.3°119.1°
C4C5H5120.3°120.4°
N3C2O2122.5°119.5°
N3C2N1113.6°121.0°
C2N3HN3116.5°119.9°
C5C6N1123.1°119.7°
C6C5H5120.3°120.5°
C5C6H6118.5°120.1°
O2C2N1123.9°119.5°
C2N1C6121.4°120.6°
C2N1C1B117.5°119.7°
C6N1C1B121.1°119.7°
N1C6H6118.4°120.2°
N1C1BC2B110.0°110.6°
N1C1BO4B111.3°110.6°
N1C1BH1B106.9°110.6°
O2'C2BC1B114.1°110.9°
O2'C2BC3B113.4°110.9°
O2'C2BH2B101.7°110.8°
C2BO2'HO2'109.5°114.0°
C2BC1BO4B106.5°103.4°
C1BC2BC3B103.8°102.1°
C2BC1BH1B111.7°110.6°
C1BC2BH2B111.7°110.9°
C1BO4BC4B109.1°107.0°
O4BC1BH1B110.4°110.7°
C2BC3BC4B104.0°104.1°
C2BC3BO3B114.3°110.4°
C3BC2BH2B112.4°110.9°
C2BC3BH3B109.6°110.5°
O2APAO5B109.7°109.5°
O2APAO3A105.0°109.5°
O2APAO1A116.5°109.5°
O4BC4BC3B107.6°107.3°
O4BC4BC5B109.4°109.9°
O4BC4BH4B111.6°110.0°
O6'C6'C5'111.6°109.5°
O6'C6'H6'1108.8°109.4°
O6'C6'H6'2108.3°109.5°
C6'O6'HO6'109.5°114.0°
PAO5BC5B121.8°123.0°
O5BPAO3A105.6°109.4°
O5BPAO1A112.9°109.5°
O5BC5BC4B110.9°109.4°
O5BC5BH5'1109.0°109.5°
O5BC5BH5'2108.7°109.5°
C4BC3BO3B108.4°110.5°
C3BC4BC5B111.7°109.9°
C4BC3BH3B115.4°110.6°
C3BC4BH4B109.2°109.8°
O3BC3BH3B105.3°110.5°
C3BO3BHO3A109.5°114.1°
O3APAO1A106.2°109.5°
PAO3APB137.2°134.0°
PAO1AHOA2109.5°114.0°
C5BC4BH4B107.3°109.8°
C4BC5BH5'1109.0°109.5°
C4BC5BH5'2108.7°109.4°
O3APBO2B107.7°109.5°
O3APBO1B108.2°109.4°
O3APBO1'103.5°109.5°
C6'C5'O5'108.0°109.5°
C6'C5'C4'113.8°109.5°
C6'C5'H5'108.1°109.5°
C5'C6'H6'1108.7°109.5°
C5'C6'H6'2108.3°109.5°
O2BPBO1B123.5°109.5°
O2BPBO1'108.5°109.5°
O5'C5'C4'111.1°109.4°
C5'O5'C1'115.1°114.1°
O5'C5'H5'111.0°109.5°
C5'C4'O4'109.9°109.6°
C5'C4'C3'108.7°109.1°
C5'C4'H4'109.9°109.6°
C4'C5'H5'104.8°109.5°
O1BPBO1'103.6°109.5°
PBO1BHOB2109.5°113.9°
PBO1'C1'129.0°123.0°
O5'C1'O1'116.3°109.5°
O5'C1'C2'111.3°109.4°
O5'C1'H1'103.3°109.5°
O4'C4'C3'110.2°109.5°
O4'C4'H4'108.5°109.5°
C4'O4'HO4'109.5°114.0°
C4'C3'C2'109.2°109.1°
C4'C3'O3'109.8°109.5°
C4'C3'H3'109.6°109.7°
C3'C4'H4'109.6°109.5°
O1'C1'C2'109.9°109.5°
O1'C1'H1'104.9°109.5°
C1'C2'C3'109.7°109.1°
C1'C2'N2'109.7°109.5°
C2'C1'H1'110.6°109.5°
C1'C2'H2'109.9°109.5°
C2'C3'O3'109.9°109.5°
C3'C2'N2'111.4°109.5°
C3'C2'H2'108.1°109.6°
C2'C3'H3'109.5°109.6°
O3'C3'H3'108.9°109.5°
C3'O3'HO3'109.5°114.0°
C2'N2'C7'123.0°120.0°
N2'C2'H2'108.1°109.5°
C2'N2'HN2'118.5°120.0°
N2'C7'O7'124.0°120.0°
N2'C7'C8'116.5°120.0°
C7'N2'HN2'118.5°120.0°
O7'C7'C8'119.5°120.0°
C7'C8'H8'1109.5°109.5°
C7'C8'H8'2109.4°109.5°
C7'C8'H8'3109.4°109.5°
H6'1C6'H6'2111.1°109.5°
H8'1C8'H8'2109.5°109.5°
H8'1C8'H8'3109.5°109.4°
H8'2C8'H8'3109.5°109.4°
H5'1C5BH5'2110.6°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4N3C5180.0°180.0°
O4C4N3C2179.9°180.0°
O4C4C5C6179.8°179.8°
O4C4N3HN30.1°0.0°
O4C4C5H50.2°0.0°
C4N3C2HN3180.0°180.0°
N3C4C5C60.2°0.2°
C4N3C2O2179.9°180.0°
C4N3C2N10.1°0.1°
N3C4C5H5179.8°180.0°
C5C4N3C20.1°0.0°
C4C5C6H5180.0°179.8°
C4C5C6N10.1°0.5°
C5C4N3HN3179.9°180.0°
C4C5C6H6179.9°179.9°
N3C2O2N1179.9°179.9°
N3C2N1C60.0°0.3°
N3C2N1C1B180.0°180.0°
C5C6N1C20.0°0.6°
C5C6N1H6180.0°179.6°
C5C6N1C1B180.0°179.8°
O2C2N1C6179.9°179.7°
O2C2N1C1B0.1°0.1°
O2C2N3HN30.1°0.0°
C2N1C6C1B180.0°179.7°
C2N1C1BC2B121.4°115.1°
C2N1C1BO4B120.8°130.9°
N1C2N3HN3179.9°179.9°
C2N1C6H6180.0°179.9°
C2N1C1BH1B0.1°7.9°
C6N1C1BC2B58.6°65.3°
C6N1C1BO4B59.2°48.7°
N1C6C5H5179.9°179.7°
C6N1C1BH1B179.9°171.8°
N1C1BC2BO2'86.4°86.3°
N1C1BC2BO4B120.7°118.5°
N1C1BC2BH1B118.6°122.9°
N1C1BO4BH1B118.6°123.0°
N1C1BC2BC3B149.6°155.5°
N1C1BO4BC4B137.4°158.5°
C1BN1C6H60.0°0.2°
N1C1BC2BH2B28.3°37.3°
O2'C2BC1BC3B123.9°118.2°
O2'C2BC1BH2B114.7°123.6°
O2'C2BC1BO4B152.8°155.2°
O2'C2BC3BH2B114.7°123.6°
O2'C2BC3BC4B153.0°139.1°
O2'C2BC3BO3B34.9°20.4°
O2'C2BC1BH1B32.2°36.6°
O2'C2BC3BH3B83.1°102.2°
C2BC1BO4BH1B121.5°118.5°
C1BC2BC3BH2B120.9°118.2°
C2BC1BO4BC4B17.5°40.1°
C1BC2BC3BC4B28.6°20.9°
C1BC2BC3BO3B89.5°97.8°
C1BC2BO2'HO2'59.0°180.0°
C1BC2BC3BH3B152.5°139.6°
O4BC1BC2BC3B28.9°37.0°
C1BO4BC4BC3B0.9°26.5°
C1BO4BC4BC5B120.6°146.0°
O4BC1BC2BH2B92.5°81.2°
C1BO4BC4BH4B120.7°93.0°
C2BC3BC4BO4B18.9°2.1°
C2BC3BC4BO3B122.0°118.6°
C2BC3BC4BH3B120.1°118.7°
C2BC3BO3BH3B120.4°122.6°
C2BC3BC4BC5B101.2°121.5°
C3BC2BC1BH1B91.8°81.6°
C3BC2BO2'HO2'177.6°67.3°
C2BC3BC4BH4B140.2°117.6°
C2BC3BO3BHO3A19.0°61.5°
O2APAO5BO3A112.6°120.0°
O2APAO5BO1A131.7°120.0°
O2APAO5BC5B165.2°55.0°
O2APAO3AO1A124.0°120.0°
O2APAO3APB127.0°40.0°
O2APAO1AHOA251.4°179.9°
O4BC4BC5BO5B61.3°67.1°
O4BC4BC3BC5B120.1°119.5°
O4BC4BC3BH4B121.2°119.6°
O4BC4BC3BO3B103.1°120.7°
O4BC4BC5BH4B121.2°121.2°
C4BO4BC1BH1B104.0°78.5°
O4BC4BC3BH3B139.0°116.6°
O4BC4BC5BH5'1178.7°172.8°
O4BC4BC5BH5'258.1°52.8°
O6'C6'C5'H6'1120.0°120.0°
O6'C6'C5'H6'2119.1°120.0°
O6'C6'C5'O5'89.3°65.0°
O6'C6'C5'C4'146.8°175.1°
O6'C6'C5'H5'30.8°55.0°
O6'C6'H6'1H6'2119.1°120.0°
O5BPAO3AO1A120.1°120.0°
PAO5BC5BC4B145.8°180.0°
O5BPAO3APB117.1°160.0°
PAO5BC5BH5'125.8°60.0°
PAO5BC5BH5'294.8°60.0°
O5BPAO1AHOA276.8°60.0°
O5BC5BC4BC3B57.7°175.0°
C5BO5BPAO3A82.2°175.0°
C5BO5BPAO1A33.4°65.0°
O5BC5BC4BH5'1120.0°120.0°
O5BC5BC4BH5'2119.4°120.0°
O5BC5BC4BH4B177.5°54.0°
O5BC5BH5'1H5'2119.4°120.1°
C4BC3BO3BH3B124.0°122.7°
C3BC4BC5BH4B119.7°120.9°
C4BC3BC2BH2B92.3°97.3°
C4BC3BO3BHO3A134.5°176.2°
C3BC4BC5BH5'162.3°55.0°
C3BC4BC5BH5'2177.2°65.0°
O3BC3BC4BC5B136.7°119.9°
O3BC3BC2BH2B149.6°144.0°
O3BC3BC4BH4B18.1°1.1°
PAO3APBO2B176.5°45.0°
PAO3APBO1B40.8°75.0°
PAO3APBO1'68.7°165.0°
O3APAO1AHOA2167.9°59.9°
O1APAO3APB3.0°80.1°
C5BC4BC3BH3B18.9°2.8°
C4BC5BH5'1H5'2119.4°119.9°
O3APBO2BO1B127.3°120.0°
O3APBO2BO1'111.4°120.0°
O3APBO1BO1'109.4°120.0°
O3APBO1'C1'121.9°175.0°
O3APBO1BHOB254.6°60.0°
C6'C5'O5'C4'125.5°120.0°
C6'C5'O5'H5'118.3°120.0°
C6'C5'C4'H5'117.9°120.0°
C6'C5'O5'C1'179.9°178.9°
C6'C5'C4'O4'57.7°57.7°
C6'C5'C4'C3'178.4°177.6°
C6'C5'C4'H4'61.6°62.5°
C5'C6'H6'1H6'2119.1°120.0°
C5'C6'O6'HO6'130.5°180.0°
O2BPBO1BO1'123.5°120.0°
O2BPBO1'C1'7.7°55.0°
O2BPBO1BHOB272.4°180.0°
O5'C5'C4'H5'119.9°120.0°
O5'C5'C4'O4'64.5°62.3°
O5'C5'C4'C3'56.2°57.6°
C5'O5'C1'O1'73.2°58.9°
C5'O5'C1'C2'53.8°61.2°
C5'O5'C1'H1'172.5°178.8°
O5'C5'C4'H4'176.2°177.6°
O5'C5'C6'H6'130.7°175.0°
O5'C5'C6'H6'2151.6°55.0°
C4'C5'O5'C1'54.6°61.1°
C5'C4'O4'C3'119.8°119.7°
C5'C4'O4'H4'120.2°120.2°
C5'C4'C3'H4'120.2°120.0°
C5'C4'C3'C2'59.3°57.0°
C5'C4'C3'O3'179.8°176.8°
C5'C4'C3'H3'60.6°62.9°
C4'C5'C6'H6'193.2°55.1°
C4'C5'C6'H6'227.7°64.9°
C5'C4'O4'HO4'141.5°60.3°
O1BPBO1'C1'125.2°65.0°
PBO1'C1'O5'52.2°90.0°
PBO1'C1'C2'179.9°150.0°
PBO1'C1'H1'61.2°30.0°
O1'PBO1BHOB2164.1°59.9°
O5'C1'O1'C2'127.6°120.0°
O5'C1'O1'H1'113.4°120.0°
O5'C1'C2'H1'114.3°120.0°
O5'C1'C2'C3'55.0°57.6°
O5'C1'C2'N2'177.7°177.5°
O5'C1'C2'H2'63.6°62.4°
C1'O5'C5'H5'61.5°58.9°
O4'C4'C3'H4'119.3°120.1°
O4'C4'C3'C2'61.2°62.9°
O4'C4'C3'O3'59.3°56.9°
O4'C4'C3'H3'178.8°177.1°
O4'C4'C5'H5'175.6°177.7°
C4'C3'C2'C1'58.9°57.0°
C4'C3'C2'O3'120.5°119.8°
C4'C3'C2'H3'120.0°120.0°
C4'C3'O3'H3'119.9°120.3°
C4'C3'C2'N2'179.5°176.9°
C4'C3'C2'H2'60.8°62.9°
C3'C4'C5'H5'63.7°62.4°
C4'C3'O3'HO3'140.4°60.5°
C3'C4'O4'HO4'21.7°180.0°
O1'C1'C2'H1'115.4°120.0°
O1'C1'C2'C3'75.4°62.4°
O1'C1'C2'N2'47.3°57.5°
O1'C1'C2'H2'166.0°177.6°
C1'C2'C3'N2'121.6°119.9°
C1'C2'C3'H2'119.8°119.9°
C1'C2'C3'O3'179.4°176.8°
C1'C2'N2'H2'119.8°120.1°
C1'C2'N2'C7'75.9°85.0°
C1'C2'C3'H3'61.0°63.0°
C1'C2'N2'HN2'104.1°94.9°
C2'C3'O3'H3'119.9°120.2°
C3'C2'N2'H2'118.6°120.3°
C3'C2'N2'C7'162.5°155.4°
C3'C2'C1'H1'169.3°177.6°
C2'C3'C4'H4'179.5°177.0°
C3'C2'N2'HN2'17.5°24.7°
C2'C3'O3'HO3'20.2°179.9°
O3'C3'C2'N2'59.0°63.3°
O3'C3'C2'H2'59.6°56.9°
O3'C3'C4'H4'60.0°63.2°
C2'N2'C7'HN2'180.0°179.9°
C2'N2'C7'O7'22.5°0.0°
C2'N2'C7'C8'158.0°180.0°
N2'C2'C1'H1'68.1°62.5°
N2'C2'C3'H3'60.6°56.9°
N2'C7'O7'C8'179.5°180.0°
C7'N2'C2'H2'43.9°35.1°
N2'C7'C8'H8'133.8°180.0°
N2'C7'C8'H8'2153.8°59.9°
N2'C7'C8'H8'386.2°60.0°
O7'C7'C8'H8'1145.7°0.0°
O7'C7'C8'H8'225.7°120.1°
O7'C7'C8'H8'394.3°120.0°
O7'C7'N2'HN2'157.5°179.9°
C7'C8'H8'1H8'2120.0°120.1°
C7'C8'H8'1H8'3120.0°120.0°
C7'C8'H8'2H8'3120.0°120.0°
C8'C7'N2'HN2'22.0°0.1°
H1'C1'C2'H2'50.6°57.6°
H2'C2'C3'H3'179.2°177.1°
H2'C2'N2'HN2'136.1°144.9°
H3'C3'C4'H4'59.6°57.0°
H3'C3'O3'HO3'99.7°59.8°
H4'C4'C5'H5'56.3°57.6°
H4'C4'O4'HO4'98.3°59.9°
H5'C5'C6'H6'1150.8°65.0°
H5'C5'C6'H6'288.3°175.0°
H6'1C6'O6'HO6'109.5°60.0°
H6'2C6'O6'HO6'11.4°60.0°
H8'1C8'H8'2H8'3120.0°120.0°
H5C5C6H60.1°0.2°
H1BC1BC2BH2B146.9°160.2°
H2BC2BO2'HO2'61.5°56.3°
H2BC2BC3BH3B31.6°21.4°
H3BC3BC4BH4B99.7°123.8°
H3BC3BO3BHO3A101.4°61.1°
H4BC4BC5BH5'157.5°66.0°
H4BC4BC5BH5'263.1°174.0°

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon