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UD1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1'C2'sing1.53Å1.53Å
C1'O1'sing1.43Å1.43Å
C1'O5'sing1.43Å1.41Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.54Å
C2'N2'sing1.46Å1.48Å
C2'H2'sing1.09Å1.12Å
C3'C4'sing1.53Å1.53Å
C3'O3'sing1.43Å1.44Å
C3'H3'sing1.09Å1.12Å
C4'C5'sing1.53Å1.56Å
C4'O4'sing1.43Å1.43Å
C4'H4'sing1.09Å1.12Å
C5'C6'sing1.53Å1.53Å
C5'O5'sing1.43Å1.44Å
C5'H5'sing1.09Å1.11Å
C6'O6'sing1.43Å1.43Å
C6'H6'1sing1.09Å1.12Å
C6'H6'2sing1.09Å1.11Å
C7'C8'sing1.51Å1.48Å
C7'N2'sing1.35Å1.31Å
C7'O7'doub1.21Å1.23Å
C8'H8'1sing1.09Å1.12Å
C8'H8'2sing1.09Å1.11Å
C8'H8'3sing1.09Å1.11Å
N2'HN2'sing0.97Å1.02Å
O1'PBsing1.61Å1.57Å
O3'HO3'sing0.97Å0.95Å
O4'HO4'sing0.97Å0.95Å
O6'HO6'sing0.97Å0.95Å
N1C2sing1.34Å1.37Å
N1C6sing1.37Å1.48Å
N1C1Bsing1.46Å1.47Å
C2N3sing1.35Å1.32Å
C2O2doub1.22Å1.22Å
N3C4sing1.35Å1.32Å
N3HN3sing0.97Å1.02Å
C4C5sing1.42Å1.47Å
C4O4doub1.22Å1.22Å
C5C6doub1.35Å1.34Å
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
C1BC2Bsing1.55Å1.54Å
C1BO4Bsing1.44Å1.41Å
C1BH1Bsing1.09Å1.11Å
C2BO2'sing1.43Å1.43Å
C2BC3Bsing1.55Å1.54Å
C2BH2Bsing1.09Å1.12Å
O2'HO2'sing0.97Å0.95Å
C3BC4Bsing1.54Å1.54Å
C3BO3Bsing1.43Å1.42Å
C3BH3Bsing1.09Å1.12Å
C4BO4Bsing1.44Å1.42Å
C4BC5Bsing1.53Å1.56Å
C4BH4Bsing1.09Å1.11Å
O3BHO3Asing0.97Å0.95Å
C5BO5Bsing1.43Å1.44Å
C5BH5'1sing1.09Å1.12Å
C5BH5'2sing1.09Å1.11Å
O5BPAsing1.61Å1.55Å
PAO1Adoub1.48Å1.50Å
PAO2Asing1.61Å1.45Å
PAO3Asing1.61Å1.48Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.55Å
PBO1Bdoub1.48Å1.48Å
PBO2Bsing1.61Å1.49Å
O2BHOB2sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2'C1'O1'108.0°109.3°
C2'C1'O5'111.0°109.8°
C2'C1'H1'109.0°109.5°
C1'C2'C3'108.6°109.1°
C1'C2'N2'112.3°109.5°
C1'C2'H2'108.0°109.6°
O1'C1'O5'108.2°109.4°
O1'C1'H1'111.8°109.4°
C1'O1'PB118.8°106.9°
O5'C1'H1'108.8°109.4°
C1'O5'C5'114.6°107.7°
C3'C2'N2'109.1°109.6°
C3'C2'H2'111.3°109.6°
C2'C3'C4'111.9°108.7°
C2'C3'O3'106.5°109.6°
C2'C3'H3'110.6°109.6°
N2'C2'H2'107.5°109.5°
C2'N2'C7'118.6°120.1°
C2'N2'HN2'126.4°120.0°
C4'C3'O3'111.7°109.7°
C4'C3'H3'105.4°109.6°
C3'C4'C5'107.8°109.0°
C3'C4'O4'108.4°109.5°
C3'C4'H4'110.6°109.6°
O3'C3'H3'110.9°109.6°
C3'O3'HO3'106.5°106.8°
C5'C4'O4'107.4°109.6°
C5'C4'H4'111.6°109.6°
C4'C5'C6'112.7°109.4°
C4'C5'O5'110.6°109.7°
C4'C5'H5'106.1°109.5°
O4'C4'H4'111.0°109.5°
C4'O4'HO4'108.3°106.8°
C6'C5'O5'108.4°109.4°
C6'C5'H5'108.5°109.4°
C5'C6'O6'108.1°109.5°
C5'C6'H6'1112.7°109.5°
C5'C6'H6'2112.7°109.5°
O5'C5'H5'110.5°109.4°
O6'C6'H6'1112.7°109.5°
O6'C6'H6'2112.7°109.4°
C6'O6'HO6'108.1°106.8°
H6'1C6'H6'297.8°109.5°
C8'C7'N2'116.3°120.0°
C8'C7'O7'120.0°120.0°
C7'C8'H8'1116.3°109.5°
C7'C8'H8'2109.7°109.4°
C7'C8'H8'3109.7°109.4°
N2'C7'O7'123.7°120.0°
C7'N2'HN2'115.0°120.0°
H8'1C8'H8'2109.7°109.5°
H8'1C8'H8'3109.7°109.5°
H8'2C8'H8'3100.5°109.5°
O1'PBO3A108.4°109.5°
O1'PBO1B111.1°109.5°
O1'PBO2B102.7°109.4°
C2N1C6120.1°120.6°
C2N1C1B119.9°119.7°
N1C2N3118.0°121.0°
N1C2O2125.1°119.5°
C6N1C1B120.0°119.7°
N1C6C5118.5°119.7°
N1C6H6125.4°120.2°
N1C1BC2B114.0°110.8°
N1C1BO4B110.0°110.7°
N1C1BH1B104.9°110.6°
N3C2O2116.9°119.5°
C2N3C4126.1°120.3°
C2N3HN3117.3°119.9°
C4N3HN3116.6°119.9°
N3C4C5118.4°119.3°
N3C4O4120.2°120.3°
C5C4O4121.4°120.3°
C4C5C6118.8°119.2°
C4C5H5125.0°120.4°
C6C5H5116.2°120.4°
C5C6H6116.1°120.2°
C2BC1BO4B105.9°103.5°
C2BC1BH1B109.1°110.6°
C1BC2BO2'108.6°111.0°
C1BC2BC3B102.4°102.1°
C1BC2BH2B116.5°110.9°
O4BC1BH1B113.1°110.6°
C1BO4BC4B111.4°107.0°
O2'C2BC3B114.9°110.9°
O2'C2BH2B104.5°110.8°
C2BO2'HO2'108.6°106.8°
C3BC2BH2B110.4°110.9°
C2BC3BC4B102.2°104.1°
C2BC3BO3B107.2°110.5°
C2BC3BH3B114.8°110.5°
C4BC3BO3B107.8°110.8°
C4BC3BH3B114.4°110.5°
C3BC4BO4B107.3°107.4°
C3BC4BC5B113.2°109.9°
C3BC4BH4B107.1°109.9°
O3BC3BH3B109.9°110.4°
C3BO3BHO3A107.2°106.8°
O4BC4BC5B104.7°109.9°
O4BC4BH4B115.2°109.9°
C5BC4BH4B109.6°109.9°
C4BC5BO5B114.9°109.5°
C4BC5BH5'1110.3°109.5°
C4BC5BH5'2110.3°109.5°
O5BC5BH5'1110.2°109.4°
O5BC5BH5'2110.2°109.5°
C5BO5BPA122.4°106.8°
H5'1C5BH5'2100.0°109.5°
O5BPAO1A105.1°109.4°
O5BPAO2A109.2°109.4°
O5BPAO3A106.0°109.5°
O1APAO2A111.2°109.5°
O1APAO3A113.0°109.5°
O2APAO3A111.9°109.5°
PAO2AHOA2109.2°106.8°
PAO3APB132.1°106.8°
O3APBO1B111.7°109.5°
O3APBO2B109.3°109.5°
O1BPBO2B113.1°109.4°
PBO2BHOB2102.6°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2'C1'O1'O5'120.3°120.2°
C2'C1'O1'H1'119.9°119.9°
C2'C1'O5'H1'119.9°120.2°
C1'C2'C3'N2'122.8°119.9°
C1'C2'C3'H2'118.8°120.0°
C1'C2'N2'H2'118.7°120.2°
C1'C2'C3'C4'55.4°53.7°
C1'C2'C3'O3'177.7°173.6°
C1'C2'C3'H3'61.8°66.1°
C2'C1'O5'C5'60.1°67.5°
C1'C2'N2'C7'72.7°90.2°
C1'C2'N2'HN2'107.2°89.8°
C2'C1'O1'PB171.3°149.8°
O1'C1'O5'H1'121.7°119.8°
O1'C1'C2'C3'62.8°58.9°
O1'C1'C2'N2'58.0°61.1°
O1'C1'C2'H2'176.4°178.8°
O1'C1'O5'C5'58.2°52.4°
C1'O1'PBO3A79.2°180.0°
C1'O1'PBO1B43.9°60.0°
C1'O1'PBO2B165.2°60.0°
O5'C1'C2'C3'55.8°61.1°
O5'C1'C2'N2'176.6°178.9°
O5'C1'C2'H2'65.1°58.8°
C1'O5'C5'C4'59.8°67.6°
C1'O5'C5'C6'176.2°172.4°
C1'O5'C5'H5'57.5°52.6°
O5'C1'O1'PB68.4°90.0°
H1'C1'C2'C3'175.6°178.8°
H1'C1'C2'N2'63.6°58.8°
H1'C1'C2'H2'54.7°61.3°
H1'C1'O5'C5'179.9°172.3°
H1'C1'O1'PB51.4°29.8°
C3'C2'N2'H2'120.9°120.2°
C2'C3'C4'O3'119.3°119.8°
C2'C3'C4'H3'120.2°119.8°
C2'C3'O3'H3'120.4°120.3°
C2'C3'C4'C5'54.8°53.8°
C2'C3'C4'O4'170.7°173.7°
C2'C3'C4'H4'67.4°66.2°
C3'C2'N2'C7'166.8°150.2°
C3'C2'N2'HN2'13.2°29.8°
C2'C3'O3'HO3'180.0°180.0°
N2'C2'C3'C4'178.1°173.6°
N2'C2'C3'O3'59.6°66.5°
N2'C2'C3'H3'61.0°53.8°
C2'N2'C7'C8'177.4°180.0°
C2'N2'C7'HN2'180.0°180.0°
C2'N2'C7'O7'1.9°0.0°
H2'C2'C3'C4'63.4°66.3°
H2'C2'C3'O3'58.9°53.6°
H2'C2'C3'H3'179.4°173.9°
H2'C2'N2'C7'45.9°30.0°
H2'C2'N2'HN2'134.1°150.0°
C4'C3'O3'H3'117.2°120.5°
C3'C4'C5'O4'116.6°119.9°
C3'C4'C5'H4'121.5°119.9°
C3'C4'O4'H4'121.6°120.2°
C3'C4'C5'C6'176.3°178.7°
C3'C4'C5'O5'54.8°61.3°
C3'C4'C5'H5'65.1°58.8°
C4'C3'O3'HO3'57.6°60.8°
C3'C4'O4'HO4'180.0°179.9°
O3'C3'C4'C5'174.1°173.6°
O3'C3'C4'O4'69.9°66.5°
O3'C3'C4'H4'51.9°53.6°
H3'C3'C4'C5'65.4°66.0°
H3'C3'C4'O4'50.5°53.9°
H3'C3'C4'H4'172.4°174.1°
H3'C3'O3'HO3'59.6°59.7°
C5'C4'O4'H4'122.2°120.2°
C4'C5'C6'O5'122.8°120.2°
C4'C5'C6'H5'117.2°120.0°
C4'C5'O5'H5'117.3°120.1°
C4'C5'C6'O6'45.2°179.9°
C4'C5'C6'H6'1170.4°60.0°
C4'C5'C6'H6'280.0°60.0°
C5'C4'O4'HO4'63.8°60.4°
O4'C4'C5'C6'67.1°58.8°
O4'C4'C5'O5'171.4°178.8°
O4'C4'C5'H5'51.5°61.1°
H4'C4'C5'C6'54.8°61.4°
H4'C4'C5'O5'66.7°58.6°
H4'C4'C5'H5'173.4°178.7°
H4'C4'O4'HO4'58.4°59.8°
C6'C5'O5'H5'118.8°119.8°
C5'C6'O6'H6'1125.2°120.0°
C5'C6'O6'H6'2125.3°120.0°
C5'C6'H6'1H6'2118.7°120.0°
C5'C6'O6'HO6'179.9°180.0°
O5'C5'C6'O6'77.5°59.7°
O5'C5'C6'H6'147.7°179.7°
O5'C5'C6'H6'2157.2°60.3°
H5'C5'C6'O6'162.4°60.1°
H5'C5'C6'H6'172.4°59.9°
H5'C5'C6'H6'237.1°179.9°
O6'C6'H6'1H6'2118.7°120.0°
H6'1C6'O6'HO6'54.7°60.0°
H6'2C6'O6'HO6'54.8°60.0°
C8'C7'N2'O7'179.3°180.0°
C7'C8'H8'1H8'2125.2°120.0°
C7'C8'H8'1H8'3125.3°120.0°
C7'C8'H8'2H8'3115.6°120.0°
C8'C7'N2'HN2'2.5°0.0°
N2'C7'C8'H8'1180.0°180.0°
N2'C7'C8'H8'254.8°60.0°
N2'C7'C8'H8'354.8°59.9°
O7'C7'C8'H8'10.7°0.0°
O7'C7'C8'H8'2125.8°120.0°
O7'C7'C8'H8'3124.6°120.0°
O7'C7'N2'HN2'178.1°180.0°
H8'1C8'H8'2H8'3115.5°120.0°
O1'PBO3APA159.1°180.0°
O1'PBO3AO1B122.8°120.0°
O1'PBO3AO2B111.2°120.0°
O1'PBO1BO2B114.9°119.9°
O1'PBO2BHOB2179.9°60.1°
C2N1C6C1B176.6°179.7°
N1C2N3O2179.3°179.5°
N1C2N3C45.0°0.5°
N1C2N3HN3175.0°179.7°
C2N1C6C52.3°0.2°
C2N1C6H6177.7°179.7°
C2N1C1BC2B120.3°56.0°
C2N1C1BO4B121.0°58.3°
C2N1C1BH1B1.0°178.9°
C6N1C2N34.3°0.5°
C6N1C2O2176.5°180.0°
N1C6C5C40.7°0.1°
N1C6C5H6180.0°179.9°
N1C6C5H5179.4°180.0°
C6N1C1BC2B56.4°124.3°
C6N1C1BO4B62.4°121.4°
C6N1C1BH1B175.6°1.4°
C1BN1C2N3172.4°179.8°
C1BN1C2O26.8°0.3°
C1BN1C6C5174.4°179.9°
C1BN1C6H65.6°0.0°
N1C1BC2BO4B121.0°118.6°
N1C1BC2BH1B116.9°122.9°
N1C1BO4BH1B117.0°122.8°
N1C1BC2BO2'85.6°86.1°
N1C1BC2BC3B152.5°155.7°
N1C1BC2BH2B31.9°37.4°
N1C1BO4BC4B143.0°158.7°
C2N3C4HN3180.0°179.9°
C2N3C4C53.4°0.2°
C2N3C4O4175.7°179.7°
O2C2N3C4175.7°180.0°
O2C2N3HN34.3°0.1°
N3C4C5O4179.1°179.9°
N3C4C5C61.1°0.1°
N3C4C5H5178.9°180.0°
HN3N3C4C5176.6°180.0°
HN3N3C4O44.3°0.1°
C4C5C6H5180.0°179.9°
C4C5C6H6179.4°180.0°
O4C4C5C6178.0°180.0°
O4C4C5H52.0°0.1°
H5C5C6H60.6°0.1°
C2BC1BO4BH1B119.4°118.4°
C1BC2BO2'C3B113.9°112.8°
C1BC2BO2'H2B125.0°123.6°
C1BC2BC3BH2B124.7°118.2°
C1BC2BO2'HO2'179.9°180.0°
C1BC2BC3BC4B30.6°20.9°
C1BC2BC3BO3B82.6°98.0°
C1BC2BC3BH3B155.0°139.5°
C2BC1BO4BC4B19.4°40.0°
O4BC1BC2BO2'153.4°155.3°
O4BC1BC2BC3B31.4°37.0°
O4BC1BC2BH2B89.1°81.2°
C1BO4BC4BC3B1.0°26.4°
C1BO4BC4BC5B119.5°145.9°
C1BO4BC4BH4B120.1°93.1°
H1BC1BC2BO2'31.3°36.8°
H1BC1BC2BC3B90.6°81.4°
H1BC1BC2BH2B148.8°160.4°
H1BC1BO4BC4B100.0°78.4°
O2'C2BC3BH2B117.8°123.5°
O2'C2BC3BC4B148.1°139.2°
O2'C2BC3BO3B34.9°20.3°
O2'C2BC3BH3B87.5°102.2°
C3BC2BO2'HO2'66.1°67.3°
C2BC3BC4BO3B112.8°118.7°
C2BC3BC4BH3B124.7°118.7°
C2BC3BO3BH3B125.5°122.6°
C2BC3BC4BO4B20.6°1.9°
C2BC3BC4BC5B94.4°121.4°
C2BC3BC4BH4B144.8°117.5°
C2BC3BO3BHO3A180.0°61.4°
H2BC2BO2'HO2'54.9°56.4°
H2BC2BC3BC4B94.1°97.2°
H2BC2BC3BO3B152.7°143.8°
H2BC2BC3BH3B30.3°21.4°
C4BC3BO3BH3B125.2°122.7°
C3BC4BO4BC5B120.5°119.5°
C3BC4BO4BH4B119.1°119.5°
C3BC4BC5BH4B119.4°121.0°
C4BC3BO3BHO3A70.7°176.2°
C3BC4BC5BO5B38.0°179.6°
C3BC4BC5BH5'1163.2°59.7°
C3BC4BC5BH5'287.3°60.3°
O3BC3BC4BO4B92.2°120.7°
O3BC3BC4BC5B152.8°119.8°
O3BC3BC4BH4B32.0°1.2°
H3BC3BC4BO4B145.3°116.7°
H3BC3BC4BC5B30.3°2.8°
H3BC3BC4BH4B90.5°123.8°
H3BC3BO3BHO3A54.6°61.2°
O4BC4BC5BH4B124.1°121.0°
O4BC4BC5BO5B78.5°61.7°
O4BC4BC5BH5'146.7°58.3°
O4BC4BC5BH5'2156.2°178.3°
C4BC5BO5BH5'1125.3°120.0°
C4BC5BO5BH5'2125.3°120.0°
C4BC5BH5'1H5'2116.1°120.0°
C4BC5BO5BPA156.5°180.0°
H4BC4BC5BO5B157.4°59.3°
H4BC4BC5BH5'177.4°179.3°
H4BC4BC5BH5'232.1°60.7°
O5BC5BH5'1H5'2116.0°120.0°
C5BO5BPAO1A15.0°60.0°
C5BO5BPAO2A104.3°59.9°
C5BO5BPAO3A134.9°180.0°
H5'1C5BO5BPA31.2°60.0°
H5'2C5BO5BPA78.2°60.0°
O5BPAO1AO2A118.0°119.9°
O5BPAO1AO3A115.2°120.0°
O5BPAO2AO3A117.1°120.0°
O5BPAO2AHOA2180.0°60.0°
O5BPAO3APB132.2°180.0°
O1APAO2AO3A127.4°120.0°
O1APAO2AHOA264.5°180.0°
O1APAO3APB113.2°60.0°
O2APAO3APB13.2°60.0°
O3APAO2AHOA262.9°60.0°
PAO3APBO1B36.3°60.0°
PAO3APBO2B89.7°60.0°
O3APBO1BO2B123.9°120.0°
O3APBO2BHOB265.2°60.0°
O1BPBO2BHOB260.0°180.0°

222926

PDB entries from 2024-07-24

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